2VQPA

Structure of the matrix protein from human respiratory syncytial virus
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
256
structure length
254
Chain Sequence
EMETYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDDKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords MATRIX PROTEIN
publication title Surface Features of a Mononegavirales Matrix Protein Indicate Sites of Membrane Interaction.
pubmed doi rcsb
source organism Human respiratory syncytial virus
total genus 63
structure length 254
sequence length 256
ec nomenclature
pdb deposition date 2008-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03393 Pneumo_matrix Pneumovirus matrix protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.20.30 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 2vqpA01
4LP7A 2VQPA 4V23A 2YKDA 4D4TA
chains in the Genus database with same CATH superfamily
1CY6A 4LDMA 3F1JA 2O19A 4V23A 2O54A 4G1OA 1CY1A 3PWTA 4CGYA 4D4TA 4RULA 4HI6A 4LP7A 1CY0A 1MW8X 1D6MA 1CY9A 2O59A 2YKDA 3TCQA 1CY8A 3PX7A 1CY2A 4LD8A 4LDBA 2VQPA 1ES6A 1H2DA 4HIUA 1I7DA 4HIWA 1ECLA 4G1GA 1CY7A 5B0VA 4CHTA 1CYYA 1CY4A 2GAJA 1MW9X 2O5EA 4HIYA 4HI5A 4LDDA 4G1LA 2GAIA 2O5CA 5D5HA 4HITA 1H2CA
chains in the Genus database with same CATH topology
4LDMA 3F1JA 4V23A 4G1OA 4D4TA 4HI6A 4LP7A 2YKDA 3TCQA 4LD8A 4LDBA 2VQPA 1ES6A 1H2DA 4HIUA 4HIWA 4G1GA 5B0VA 4HIYA 4HI5A 4LDDA 4G1LA 4HITA 1H2CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LP7 A;  2VQP A;  4V23 A;  2YKD A;  4D4T A; 
#chains in the Genus database with same CATH topology
 1CY6 A;  4LDM A;  3F1J A;  2O19 A;  4V23 A;  2O54 A;  4G1O A;  1CY1 A;  3PWT A;  4CGY A;  4D4T A;  4RUL A;  4HI6 A;  4LP7 A;  1CY0 A;  1MW8 X;  1D6M A;  1CY9 A;  2O59 A;  2YKD A;  3TCQ A;  1CY8 A;  3PX7 A;  1CY2 A;  4LD8 A;  4LDB A;  2VQP A;  1ES6 A;  1H2D A;  4HIU A;  1I7D A;  4HIW A;  1ECL A;  4G1G A;  1CY7 A;  5B0V A;  4CHT A;  1CYY A;  1CY4 A;  2GAJ A;  1MW9 X;  2O5E A;  4HIY A;  4HI5 A;  4LDD A;  4G1L A;  2GAI A;  2O5C A;  5D5H A;  4HIT A;  1H2C A; 
#chains in the Genus database with same CATH homology
 4LDM A;  3F1J A;  4V23 A;  4G1O A;  4D4T A;  4HI6 A;  4LP7 A;  2YKD A;  3TCQ A;  4LD8 A;  4LDB A;  2VQP A;  1ES6 A;  1H2D A;  4HIU A;  4HIW A;  4G1G A;  5B0V A;  4HIY A;  4HI5 A;  4LDD A;  4G1L A;  4HIT A;  1H2C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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