2VX9A

H. salinarum dodecin e45a mutant
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
63
structure length
63
Chain Sequence
VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVAIGAVEERTYQTEVQVAFEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Flavoprotein
molecule keywords DODECIN
publication title Dodecin is the Key Player in Flavin Homeostasis of Archaea.
pubmed doi rcsb
source organism Halobacterium salinarum r1
total genus 13
structure length 63
sequence length 63
ec nomenclature
pdb deposition date 2008-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07311 Dodecin Dodecin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1660.10 Alpha Beta 2-Layer Sandwich Dodecin subunit-like Flavin-binding protein dodecin 2vx9A00
2CZ8A 2VKFA 2CJCA 2DEGA 2M2JA 2YJ0A 2YIZA 2CIEA 2NOCA 4B2JA 2VX9A 4EVUA 2CC8A 4B2MA 2DEVA 3ONRA 2MA4A 2CC9A 2VKGA 2V18A 3OQTA 4B2KA 4B2HA 2CCBA 2V19A 2VXAA 2CC6A 2CIFA 2VYXA 2DEHA 2MA8A 1MOGA 2JNAA 2CCCA 2V21A 2UX9A 2CC7A
chains in the Genus database with same CATH superfamily
2CZ8A 1RH7A 2VKFA 2CJCA 2DEGA 2M2JA 2YJ0A 2YIZA 2CIEA 2NOCA 4B2JA 2VX9A 4EVUA 1RGXA 2CC8A 4B2MA 2DEVA 3ONRA 2MA4A 2JZ7A 2CC9A 2VKGA 2V18A 3OQTA 4B2KA 3W1EA 4B2HA 2CCBA 2V19A 2VXAA 2CC6A 2CIFA 2VYXA 2DEHA 2MA8A 1RFXA 1MOGA 2JNAA 2CCCA 2V21A 2UX9A 2CC7A
chains in the Genus database with same CATH topology
2CZ8A 2VKFA 2CJCA 2DEGA 2M2JA 2YJ0A 2YIZA 2CIEA 2NOCA 4B2JA 2VX9A 4EVUA 2CC8A 4B2MA 2DEVA 3ONRA 2MA4A 2CC9A 2VKGA 2V18A 3OQTA 4B2KA 4B2HA 2CCBA 2V19A 2VXAA 2CC6A 2CIFA 2VYXA 2DEHA 2MA8A 1MOGA 2JNAA 2CCCA 2V21A 2UX9A 2CC7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CZ8 A;  2VKF A;  2CJC A;  2DEG A;  2M2J A;  2YJ0 A;  2YIZ A;  2CIE A;  2NOC A;  4B2J A;  2VX9 A;  4EVU A;  2CC8 A;  4B2M A;  2DEV A;  3ONR A;  2MA4 A;  2CC9 A;  2VKG A;  2V18 A;  3OQT A;  4B2K A;  4B2H A;  2CCB A;  2V19 A;  2VXA A;  2CC6 A;  2CIF A;  2VYX A;  2DEH A;  2MA8 A;  1MOG A;  2JNA A;  2CCC A;  2V21 A;  2UX9 A;  2CC7 A; 
#chains in the Genus database with same CATH topology
 2CZ8 A;  1RH7 A;  2VKF A;  2CJC A;  2DEG A;  2M2J A;  2YJ0 A;  2YIZ A;  2CIE A;  2NOC A;  4B2J A;  2VX9 A;  4EVU A;  1RGX A;  2CC8 A;  4B2M A;  2DEV A;  3ONR A;  2MA4 A;  2JZ7 A;  2CC9 A;  2VKG A;  2V18 A;  3OQT A;  4B2K A;  3W1E A;  4B2H A;  2CCB A;  2V19 A;  2VXA A;  2CC6 A;  2CIF A;  2VYX A;  2DEH A;  2MA8 A;  1RFX A;  1MOG A;  2JNA A;  2CCC A;  2V21 A;  2UX9 A;  2CC7 A; 
#chains in the Genus database with same CATH homology
 2CZ8 A;  2VKF A;  2CJC A;  2DEG A;  2M2J A;  2YJ0 A;  2YIZ A;  2CIE A;  2NOC A;  4B2J A;  2VX9 A;  4EVU A;  2CC8 A;  4B2M A;  2DEV A;  3ONR A;  2MA4 A;  2CC9 A;  2VKG A;  2V18 A;  3OQT A;  4B2K A;  4B2H A;  2CCB A;  2V19 A;  2VXA A;  2CC6 A;  2CIF A;  2VYX A;  2DEH A;  2MA8 A;  1MOG A;  2JNA A;  2CCC A;  2V21 A;  2UX9 A;  2CC7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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