2VXAA

H. halophila dodecin in complex with riboflavin
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
66
structure length
66
Chain Sequence
DHVYKIVELTGSSPNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEGGRVNHWQVTVKVGFTLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Flavoprotein
molecule keywords DODECIN
publication title Dodecin is the Key Player in Flavin Homeostasis of Archaea.
pubmed doi rcsb
source organism Halorhodospira halophila
total genus 10
structure length 66
sequence length 66
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date 2008-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07311 Dodecin Dodecin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1660.10 Alpha Beta 2-Layer Sandwich Dodecin subunit-like Flavin-binding protein dodecin 2vxaA00
1MOGA 2CCBA 2YJ0A 2CC7A 4B2HA 2V21A 2MA4A 2V18A 2VKFA 2NOCA 2DEHA 2VKGA 2VYXA 2CCCA 4B2KA 2CJCA 2DEGA 2M2JA 2MA8A 2CIEA 4B2JA 2VX9A 4B2MA 4EVUA 2CZ8A 2CC6A 2V19A 2DEVA 2JNAA 2UX9A 2CC8A 2VXAA 2CIFA 3ONRA 2CC9A 3OQTA 2YIZA
chains in the Genus database with same CATH superfamily
1MOGA 2CCBA 2YJ0A 2CC7A 4B2HA 2V21A 2MA4A 1RFXA 2V18A 2VKFA 2DEHA 2NOCA 2VKGA 1RH7A 2VYXA 2CCCA 4B2KA 2CJCA 2DEGA 2M2JA 2MA8A 2CIEA 4B2JA 2VX9A 4B2MA 4EVUA 2CZ8A 2CC6A 1RGXA 2V19A 2DEVA 2JNAA 3W1EA 2UX9A 2CC8A 2VXAA 2CIFA 3ONRA 2JZ7A 2CC9A 3OQTA 2YIZA
chains in the Genus database with same CATH topology
1MOGA 2CCBA 2YJ0A 2CC7A 4B2HA 2V21A 2MA4A 2V18A 2VKFA 2NOCA 2DEHA 2VKGA 2VYXA 2CCCA 4B2KA 2CJCA 2DEGA 2M2JA 2MA8A 2CIEA 4B2JA 2VX9A 4B2MA 4EVUA 2CZ8A 2CC6A 2V19A 2DEVA 2JNAA 2UX9A 2CC8A 2VXAA 2CIFA 3ONRA 2CC9A 3OQTA 2YIZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MOG A;  2CCB A;  2YJ0 A;  2CC7 A;  4B2H A;  2V21 A;  2MA4 A;  2V18 A;  2VKF A;  2NOC A;  2DEH A;  2VKG A;  2VYX A;  2CCC A;  4B2K A;  2CJC A;  2DEG A;  2M2J A;  2MA8 A;  2CIE A;  4B2J A;  2VX9 A;  4B2M A;  4EVU A;  2CZ8 A;  2CC6 A;  2V19 A;  2DEV A;  2JNA A;  2UX9 A;  2CC8 A;  2VXA A;  2CIF A;  3ONR A;  2CC9 A;  3OQT A;  2YIZ A; 
#chains in the Genus database with same CATH topology
 1MOG A;  2CCB A;  2YJ0 A;  2CC7 A;  4B2H A;  2V21 A;  2MA4 A;  1RFX A;  2V18 A;  2VKF A;  2DEH A;  2NOC A;  2VKG A;  1RH7 A;  2VYX A;  2CCC A;  4B2K A;  2CJC A;  2DEG A;  2M2J A;  2MA8 A;  2CIE A;  4B2J A;  2VX9 A;  4B2M A;  4EVU A;  2CZ8 A;  2CC6 A;  1RGX A;  2V19 A;  2DEV A;  2JNA A;  3W1E A;  2UX9 A;  2CC8 A;  2VXA A;  2CIF A;  3ONR A;  2JZ7 A;  2CC9 A;  3OQT A;  2YIZ A; 
#chains in the Genus database with same CATH homology
 1MOG A;  2CCB A;  2YJ0 A;  2CC7 A;  4B2H A;  2V21 A;  2MA4 A;  2V18 A;  2VKF A;  2NOC A;  2DEH A;  2VKG A;  2VYX A;  2CCC A;  4B2K A;  2CJC A;  2DEG A;  2M2J A;  2MA8 A;  2CIE A;  4B2J A;  2VX9 A;  4B2M A;  4EVU A;  2CZ8 A;  2CC6 A;  2V19 A;  2DEV A;  2JNA A;  2UX9 A;  2CC8 A;  2VXA A;  2CIF A;  3ONR A;  2CC9 A;  3OQT A;  2YIZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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