2VYUA

Crystal structure of choline binding protein f from streptococcus pneumoniae in the presence of a peptidoglycan analogue (tetrasaccharide-pentapeptide)
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
311
structure length
300
Chain Sequence
NTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Choline-binding protein
molecule keywords CHOLINE BINDING PROTEIN F
publication title Crystal Structure of Cbpf, a Bifunctional Choline-Binding Protein and Autolysis Regulator from Streptococcus Pneumoniae.
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 50
structure length 300
sequence length 311
ec nomenclature
pdb deposition date 2008-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2vyuA02
2.10.270.20 Mainly Beta Ribbon left handed beta-beta-3-solenoid left handed beta-beta-3-solenoid 2vyuA01
4NC0A 2BMLA 2IXVA 2G7CA 3KLLA 2J8FA 4TTUA 4TVCA 2QJ6A 1OBAA 2V04A 2VYUA 4NC2A 4X36A 1HCXA 3TTOA 4AYGA 1H8GA 2F6EA 1H09A 3KLKA 2V05A 4NBXA 3HZ3A 2X8OA 2J8GA 2X8PA 4NBYA 1GVMA 3HIAA 4NBZA 4TVDA 2IXUA 3TTQA 2X8MA
chains in the Genus database with same CATH superfamily
4NC0A 2BMLA 2IXVA 2G7CA 3KLLA 2J8FA 4TTUA 4TVCA 2QJ6A 1OBAA 2V04A 2VYUA 4NC2A 4X36A 1HCXA 3TTOA 4AYGA 1H8GA 2F6EA 1H09A 3KLKA 2V05A 4NBXA 3HZ3A 2X8OA 2J8GA 2X8PA 4NBYA 1GVMA 3HIAA 4NBZA 4TVDA 2IXUA 3TTQA 2X8MA
chains in the Genus database with same CATH topology
4NC0A 2BMLA 2IXVA 2G7CA 3KLLA 2J8FA 4TTUA 4TVCA 2QJ6A 1OBAA 2V04A 2VYUA 4NC2A 4X36A 1HCXA 3TTOA 4AYGA 1H8GA 2F6EA 1H09A 3KLKA 2V05A 4NBXA 3HZ3A 2X8OA 2J8GA 2X8PA 4NBYA 1GVMA 3HIAA 4NBZA 4TVDA 2IXUA 3TTQA 2X8MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NC0 A;  2BML A;  2IXV A;  2G7C A;  3KLL A;  2J8F A;  4TTU A;  4TVC A;  2QJ6 A;  1OBA A;  2V04 A;  2VYU A;  4NC2 A;  4X36 A;  1HCX A;  3TTO A;  4AYG A;  1H8G A;  2F6E A;  1H09 A;  3KLK A;  2V05 A;  4NBX A;  3HZ3 A;  2X8O A;  2J8G A;  2X8P A;  4NBY A;  1GVM A;  3HIA A;  4NBZ A;  4TVD A;  2IXU A;  3TTQ A;  2X8M A; 
#chains in the Genus database with same CATH topology
 4NC0 A;  2BML A;  2IXV A;  2G7C A;  3KLL A;  2J8F A;  4TTU A;  4TVC A;  2QJ6 A;  1OBA A;  2V04 A;  2VYU A;  4NC2 A;  4X36 A;  1HCX A;  3TTO A;  4AYG A;  1H8G A;  2F6E A;  1H09 A;  3KLK A;  2V05 A;  4NBX A;  3HZ3 A;  2X8O A;  2J8G A;  2X8P A;  4NBY A;  1GVM A;  3HIA A;  4NBZ A;  4TVD A;  2IXU A;  3TTQ A;  2X8M A; 
#chains in the Genus database with same CATH homology
 4NC0 A;  2BML A;  2IXV A;  2G7C A;  3KLL A;  2J8F A;  4TTU A;  4TVC A;  2QJ6 A;  1OBA A;  2V04 A;  2VYU A;  4NC2 A;  4X36 A;  1HCX A;  3TTO A;  4AYG A;  1H8G A;  2F6E A;  1H09 A;  3KLK A;  2V05 A;  4NBX A;  3HZ3 A;  2X8O A;  2J8G A;  2X8P A;  4NBY A;  1GVM A;  3HIA A;  4NBZ A;  4TVD A;  2IXU A;  3TTQ A;  2X8M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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