2W2GA

Human sars coronavirus unique domain
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
264
structure length
257
Chain Sequence
KIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEILGTVSWNLREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLRAPAVVSVSSPDAVTTYNGYLTSSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Rna binding protein
molecule keywords NON-STRUCTURAL PROTEIN 3
publication title The Sars-Unique Domain (Sud) of Sars Coronavirus Contains Two Macrodomains that Bind G-Quadruplexes.
pubmed doi rcsb
source organism Sars coronavirus
total genus 82
structure length 257
sequence length 264
chains with identical sequence B
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2008-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11633 SUD-M Single-stranded poly(A) binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.20 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E; domain 1 2w2gA02
3.40.220.30 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E; domain 1 2w2gA01
2W2GA 2JZDA 2KQVA 2JZFA 2RNKA 2WCTA 2JZEA
chains in the Genus database with same CATH superfamily
1SPVA 3Q71A 2DX6A 3KR4A 1HJZA 1YD9A 1VHUA 4JLLA 1LCPA 2L8RA 1BPNA 2JZDA 4ZX8A 3EWRA 3H8EA 4ABKA 3GQOA 2VRIA 4R7MA 3KZWA 4ETJA 4GUAA 3JRUA 4JGKA 4IQYA 3KQXA 3SIJA 5FSXA 2XD7A 5FSUA 3EW5A 3GPOA 3EJFA 2W2GA 2J9AA 3IIDA 2WCTA 1GYTA 2EWBA 4ZY2A 3EJGA 1LANA 2JZFA 3IJ3A 3SIHA 4J5SA 3GQEA 3V2BA 3ETIA 4JVVA 1TXZA 2BFRA 4ZY1A 4ZY0A 3EWOA 3Q6ZA 2ACFA 4ZI6A 5E3BA 3SIIA 3V45A 4J5RA 4ABLA 3GPGA 5D8NA 3EWQA 3JZTA 3EWPA 4R76A 4ZYQA 1BPMA 1LAMA 4UMLA 1ZR5A 3T8WA 3VFQA 4ESSA 3H8GA 1NJRA 5CMSA 2RNKA 5CB3A 5HIHA 2BFQA 1TY8A 3PEIA 3EKEA 4J5QA 4ETKA 5CB5A 2AFCA 2LGRA 3SIGA 5HOLA 5FSVA 3KR5A 4K0CA 2X47A 2FG1A 2JZEA 4J4ZA 4KSIA 5CBMA 1ZR3A 4D86A 3KQZA 5DUSA 4KYBA 4X2TA 2EEEA 5FSYA 4ZX9A 4R6TA 5AILA 4GVVA 3H8FA 5FSZA 3IIFA 2FXKA 1BLLE 2KQVA 4JCAA 3GPQA 4TU0A 2FAVA 1LAPA 4K3NA 4GVWA
chains in the Genus database with same CATH topology
2W2GA 2JZDA 2KQVA 2JZFA 2RNKA 2WCTA 2JZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W2G A;  2JZD A;  2KQV A;  2JZF A;  2RNK A;  2WCT A;  2JZE A; 
#chains in the Genus database with same CATH topology
 1SPV A;  3Q71 A;  2DX6 A;  3KR4 A;  1HJZ A;  1YD9 A;  1VHU A;  4JLL A;  1LCP A;  2L8R A;  1BPN A;  2JZD A;  4ZX8 A;  3EWR A;  3H8E A;  4ABK A;  3GQO A;  2VRI A;  4R7M A;  3KZW A;  4ETJ A;  4GUA A;  3JRU A;  4JGK A;  4IQY A;  3KQX A;  3SIJ A;  5FSX A;  2XD7 A;  5FSU A;  3EW5 A;  3GPO A;  3EJF A;  2W2G A;  2J9A A;  3IID A;  2WCT A;  1GYT A;  2EWB A;  4ZY2 A;  3EJG A;  1LAN A;  2JZF A;  3IJ3 A;  3SIH A;  4J5S A;  3GQE A;  3V2B A;  3ETI A;  4JVV A;  1TXZ A;  2BFR A;  4ZY1 A;  4ZY0 A;  3EWO A;  3Q6Z A;  2ACF A;  4ZI6 A;  5E3B A;  3SII A;  3V45 A;  4J5R A;  4ABL A;  3GPG A;  5D8N A;  3EWQ A;  3JZT A;  3EWP A;  4R76 A;  4ZYQ A;  1BPM A;  1LAM A;  4UML A;  1ZR5 A;  3T8W A;  3VFQ A;  4ESS A;  3H8G A;  1NJR A;  5CMS A;  2RNK A;  5CB3 A;  5HIH A;  2BFQ A;  1TY8 A;  3PEI A;  3EKE A;  4J5Q A;  4ETK A;  5CB5 A;  2AFC A;  2LGR A;  3SIG A;  5HOL A;  5FSV A;  3KR5 A;  4K0C A;  2X47 A;  2FG1 A;  2JZE A;  4J4Z A;  4KSI A;  5CBM A;  1ZR3 A;  4D86 A;  3KQZ A;  5DUS A;  4KYB A;  4X2T A;  2EEE A;  5FSY A;  4ZX9 A;  4R6T A;  5AIL A;  4GVV A;  3H8F A;  5FSZ A;  3IIF A;  2FXK A;  1BLL E;  2KQV A;  4JCA A;  3GPQ A;  4TU0 A;  2FAV A;  1LAP A;  4K3N A;  4GVW A; 
#chains in the Genus database with same CATH homology
 2W2G A;  2JZD A;  2KQV A;  2JZF A;  2RNK A;  2WCT A;  2JZE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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