2W3OA

Crystal structure of the human pnkp fha domain in complex with an xrcc1-derived phosphopeptide
Total Genus 19
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
100
structure length
100
Chain Sequence
GRLWLESPPGEAPPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLVNGEHPLTLRWE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase,transferase/peptide
molecule keywords BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE
publication title Specific Recognition of a Multiply Phosphorylated Motif in the DNA Repair Scaffold Xrcc1 by the Fha Domain of Human Pnk.
pubmed doi rcsb
source organism Homo sapiens
total genus 19
structure length 100
sequence length 100
chains with identical sequence B
ec nomenclature ec 2.7.1.78: Polynucleotide 5'-hydroxyl-kinase.
pdb deposition date 2008-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17913 FHA_2 FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 2w3oA00
2KB3A 2JKDA 3HX1A 1K2MA 5DJOA 3HUFA 1J4LA 1UHTA 1R21A 1J4OA 4G2SA 2KFUA 1J4PA 3UNMA 2KKLA 1LGQA 2LC1A 3UNNA 3I6WA 1G3GA 4D9VA 3I0MA 1LGPA 3UV0A 2G1LA 1K3QA 2FF4A 1G6GA 4EGXA 2FEZA 3UOTA 1FHRA 4H87A 1UJXA 1K2NA 1K3JA 1WLNA 2W3OA 1WV3A 3HUEA 3MDBA 2AFFA 3FM8A 1K3NA 1MZKA 1YJ5C 3I6UA 3KT9A 4QCJA 2PIEA 3UN0A 3VA4A 2CSWA 2A0TA 3UMZA 1DMZA 2BRFA 2KB4A 5A8IA 2JQIA 1YJMA 1J4KA 3OUNA 4JONA 2JQLA 3VA1A 3GQSA 1QU5A 3ELSA 3VPYA 1GXCA 2EH0A 2XT9B 4EJQA 3PO8A 2JQJA 2JPEA 1FHQA 4A0EA 3POAA 5E50A 1J4QA 3ELVA 3I0NA
chains in the Genus database with same CATH superfamily
2KB3A 5JERA 1U7VA 4A4YA 2JKDA 1Z0UA 3HX1A 1K2MA 5DHQA 5DJOA 3HUFA 1J4LA 1UHTA 1R21A 3V80A 1J4OA 5JEKA 5BVIA 1U0TA 4G2SA 5DHPA 1KHUA 2KFUA 1J4PA 3UNMA 2KKLA 1Y3HA 1SUWA 1LGQA 1ZOQA 2BONA 2Q5FA 1MR1A 5JEMA 2LC1A 3UNNA 2XXSA 2P1RA 4KU0D 3I6WA 5DHTA 3V8NA 4D9VA 3I0MA 1G3GA 1LGPA 3UV0A 2I2FA 5DHUA 2I2BA 4DY6A 2G1LA 3V8RA 1K3QA 2FF4A 1G6GA 1Z0SA 4EGXA 2FEZA 5DHSA 3UOTA 1FHRA 3A77A 3VZDA 2I2CA 5EJGA 4H87A 1UJXA 1U0RA 1K2NA 1K3JA 1WLNA 2W3OA 1WV3A 3HUEA 3MDBA 4R9PA 5JELA 2AFFA 1DD1A 3FM8A 3S40A 1K3NA 1MZKA 1G88A 4L02A 1KHXA 2QV7A 1YJ5C 3V7YA 3PFNA 3V8QA 5DHRA 3I6UA 3KT9A 3AFOA 4QCJA 1U7FA 2PIEA 3UN0A 3VA4A 3VZCA 2CSWA 2QVLA 5EJFA 2A0TA 3UMZA 1DMZA 2I2DA 3DSHA 3VZBA 2BRFA 2KB4A 4HAOA 5A8IA 2JQIA 1YJMA 3T5PA 1U7FB 1J4KA 3DITA 5EJIA 1YGSA 2I1WA 3OUNA 4JIVD 1DEVA 2AN1A 4JONA 5JEJA 4V24A 2JQLA 4JIWD 3GQSA 3VA1A 5JEOA 1MK2A 1QU5A 3GMJA 4WRRA 3V8MA 3ELSA 3VPYA 1QWTA 2JGRA 1GXCA 2EH0A 2XT9B 3V7UA 1U7VB 4WERA 1Y3IA 1YT5A 4EJQA 1J2FA 3PO8A 2JQJA 1MJSA 5EJHA 2JPEA 1Z0ZA 2I2AA 1FHQA 3V8PA 4A0EA 3POAA 5E50A 1J4QA 5C4VA 3ELVA 2I29A 3I0NA 3V7WA
chains in the Genus database with same CATH topology
2KB3A 5JERA 1U7VA 4A4YA 2JKDA 3HX1A 1K2MA 5DJOA 3HUFA 1J4LA 1UHTA 1R21A 5JEKA 1J4OA 5BVIA 4G2SA 1KHUA 2KFUA 1J4PA 3UNMA 2KKLA 1LGQA 1ZOQA 2BONA 1MR1A 5JEMA 2LC1A 3UNNA 2XXSA 2P1RA 4KU0D 3I6WA 1G3GA 4D9VA 3I0MA 1LGPA 3UV0A 2G1LA 1K3QA 2FF4A 1G6GA 4EGXA 2FEZA 3UOTA 1FHRA 3A77A 3VZDA 4H87A 1UJXA 1K2NA 1K3JA 1WLNA 2W3OA 1WV3A 3HUEA 3MDBA 4R9PA 5JELA 2AFFA 1DD1A 3FM8A 3S40A 1K3NA 1MZKA 1G88A 4L02A 1KHXA 2QV7A 1YJ5C 3I6UA 3KT9A 4QCJA 1U7FA 2PIEA 3UN0A 3VA4A 3VZCA 2CSWA 2QVLA 2A0TA 3UMZA 1DMZA 3DSHA 3VZBA 2BRFA 2KB4A 5A8IA 2JQIA 1YJMA 3T5PA 1U7FB 1J4KA 3DITA 1YGSA 3OUNA 4JIVD 1DEVA 4JONA 5JEJA 4V24A 2JQLA 4JIWD 3GQSA 3VA1A 5JEOA 1MK2A 1QU5A 3GMJA 4WRRA 3ELSA 3VPYA 1QWTA 2JGRA 1GXCA 2EH0A 2XT9B 1U7VB 4WERA 4EJQA 1J2FA 3PO8A 2JQJA 1MJSA 2JPEA 1FHQA 4A0EA 3POAA 5E50A 1J4QA 5C4VA 3ELVA 3I0NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KB3 A;  2JKD A;  3HX1 A;  1K2M A;  5DJO A;  3HUF A;  1J4L A;  1UHT A;  1R21 A;  1J4O A;  4G2S A;  2KFU A;  1J4P A;  3UNM A;  2KKL A;  1LGQ A;  2LC1 A;  3UNN A;  3I6W A;  1G3G A;  4D9V A;  3I0M A;  1LGP A;  3UV0 A;  2G1L A;  1K3Q A;  2FF4 A;  1G6G A;  4EGX A;  2FEZ A;  3UOT A;  1FHR A;  4H87 A;  1UJX A;  1K2N A;  1K3J A;  1WLN A;  2W3O A;  1WV3 A;  3HUE A;  3MDB A;  2AFF A;  3FM8 A;  1K3N A;  1MZK A;  1YJ5 C;  3I6U A;  3KT9 A;  4QCJ A;  2PIE A;  3UN0 A;  3VA4 A;  2CSW A;  2A0T A;  3UMZ A;  1DMZ A;  2BRF A;  2KB4 A;  5A8I A;  2JQI A;  1YJM A;  1J4K A;  3OUN A;  4JON A;  2JQL A;  3VA1 A;  3GQS A;  1QU5 A;  3ELS A;  3VPY A;  1GXC A;  2EH0 A;  2XT9 B;  4EJQ A;  3PO8 A;  2JQJ A;  2JPE A;  1FHQ A;  4A0E A;  3POA A;  5E50 A;  1J4Q A;  3ELV A;  3I0N A; 
#chains in the Genus database with same CATH topology
 2KB3 A;  5JER A;  1U7V A;  4A4Y A;  2JKD A;  1Z0U A;  3HX1 A;  1K2M A;  5DHQ A;  5DJO A;  3HUF A;  1J4L A;  1UHT A;  1R21 A;  3V80 A;  1J4O A;  5JEK A;  5BVI A;  1U0T A;  4G2S A;  5DHP A;  1KHU A;  2KFU A;  1J4P A;  3UNM A;  2KKL A;  1Y3H A;  1SUW A;  1LGQ A;  1ZOQ A;  2BON A;  2Q5F A;  1MR1 A;  5JEM A;  2LC1 A;  3UNN A;  2XXS A;  2P1R A;  4KU0 D;  3I6W A;  5DHT A;  3V8N A;  4D9V A;  3I0M A;  1G3G A;  1LGP A;  3UV0 A;  2I2F A;  5DHU A;  2I2B A;  4DY6 A;  2G1L A;  3V8R A;  1K3Q A;  2FF4 A;  1G6G A;  1Z0S A;  4EGX A;  2FEZ A;  5DHS A;  3UOT A;  1FHR A;  3A77 A;  3VZD A;  2I2C A;  5EJG A;  4H87 A;  1UJX A;  1U0R A;  1K2N A;  1K3J A;  1WLN A;  2W3O A;  1WV3 A;  3HUE A;  3MDB A;  4R9P A;  5JEL A;  2AFF A;  1DD1 A;  3FM8 A;  3S40 A;  1K3N A;  1MZK A;  1G88 A;  4L02 A;  1KHX A;  2QV7 A;  1YJ5 C;  3V7Y A;  3PFN A;  3V8Q A;  5DHR A;  3I6U A;  3KT9 A;  3AFO A;  4QCJ A;  1U7F A;  2PIE A;  3UN0 A;  3VA4 A;  3VZC A;  2CSW A;  2QVL A;  5EJF A;  2A0T A;  3UMZ A;  1DMZ A;  2I2D A;  3DSH A;  3VZB A;  2BRF A;  2KB4 A;  4HAO A;  5A8I A;  2JQI A;  1YJM A;  3T5P A;  1U7F B;  1J4K A;  3DIT A;  5EJI A;  1YGS A;  2I1W A;  3OUN A;  4JIV D;  1DEV A;  2AN1 A;  4JON A;  5JEJ A;  4V24 A;  2JQL A;  4JIW D;  3GQS A;  3VA1 A;  5JEO A;  1MK2 A;  1QU5 A;  3GMJ A;  4WRR A;  3V8M A;  3ELS A;  3VPY A;  1QWT A;  2JGR A;  1GXC A;  2EH0 A;  2XT9 B;  3V7U A;  1U7V B;  4WER A;  1Y3I A;  1YT5 A;  4EJQ A;  1J2F A;  3PO8 A;  2JQJ A;  1MJS A;  5EJH A;  2JPE A;  1Z0Z A;  2I2A A;  1FHQ A;  3V8P A;  4A0E A;  3POA A;  5E50 A;  1J4Q A;  5C4V A;  3ELV A;  2I29 A;  3I0N A;  3V7W A; 
#chains in the Genus database with same CATH homology
 2KB3 A;  5JER A;  1U7V A;  4A4Y A;  2JKD A;  3HX1 A;  1K2M A;  5DJO A;  3HUF A;  1J4L A;  1UHT A;  1R21 A;  5JEK A;  1J4O A;  5BVI A;  4G2S A;  1KHU A;  2KFU A;  1J4P A;  3UNM A;  2KKL A;  1LGQ A;  1ZOQ A;  2BON A;  1MR1 A;  5JEM A;  2LC1 A;  3UNN A;  2XXS A;  2P1R A;  4KU0 D;  3I6W A;  1G3G A;  4D9V A;  3I0M A;  1LGP A;  3UV0 A;  2G1L A;  1K3Q A;  2FF4 A;  1G6G A;  4EGX A;  2FEZ A;  3UOT A;  1FHR A;  3A77 A;  3VZD A;  4H87 A;  1UJX A;  1K2N A;  1K3J A;  1WLN A;  2W3O A;  1WV3 A;  3HUE A;  3MDB A;  4R9P A;  5JEL A;  2AFF A;  1DD1 A;  3FM8 A;  3S40 A;  1K3N A;  1MZK A;  1G88 A;  4L02 A;  1KHX A;  2QV7 A;  1YJ5 C;  3I6U A;  3KT9 A;  4QCJ A;  1U7F A;  2PIE A;  3UN0 A;  3VA4 A;  3VZC A;  2CSW A;  2QVL A;  2A0T A;  3UMZ A;  1DMZ A;  3DSH A;  3VZB A;  2BRF A;  2KB4 A;  5A8I A;  2JQI A;  1YJM A;  3T5P A;  1U7F B;  1J4K A;  3DIT A;  1YGS A;  3OUN A;  4JIV D;  1DEV A;  4JON A;  5JEJ A;  4V24 A;  2JQL A;  4JIW D;  3GQS A;  3VA1 A;  5JEO A;  1MK2 A;  1QU5 A;  3GMJ A;  4WRR A;  3ELS A;  3VPY A;  1QWT A;  2JGR A;  1GXC A;  2EH0 A;  2XT9 B;  1U7V B;  4WER A;  4EJQ A;  1J2F A;  3PO8 A;  2JQJ A;  1MJS A;  2JPE A;  1FHQ A;  4A0E A;  3POA A;  5E50 A;  1J4Q A;  5C4V A;  3ELV A;  3I0N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...