2W5RA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKASDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
total genus 168
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5rA02
1SHQA 5LRNA 2W5WA 2W5SA 1ZEBA 4MHXA 1ZEFA 2W5QA 3NKRA 5EGEA 2D1GA 2W5XA 3T00A 3UO0A 3M8YA 3BDHA 5K4PA 3WAVA 3TG0A 5IJQA 1EJJA 2GSUA 1O99A 2ANHA 3OT9A 3Q3QA 3MK2A 1B8JA 4KAVA 4UPLA 1EW9A 3NKQA 4LR9A 2GLQA 5KXAA 5IJSA 4KAYA 4UORA 5AJ9A 5TJ3A 3MK1A 4TN0A 4LRDA 3NVLA 1ALKA 1KH4A 3B5QA 1KH5A 3LXQA 3IGYB 1ANIA 1HJKA 1E3CP 5C66A 3WAWA 3MK0A 4NWJA 3NKNA 3IGZB 5GOVA 3WAYA 1AUKA 1ED9A 3NKOA 2RH6A 3UN3A 1KHLA 4MY4A 3NKMA 2GSNA 4CXSA 4N7TA 2W8SA 4FDIA 4UOOA 3UN5A 4ZG7A 1E2SP 4UPIA 5LIAA 1KHJA 2W5VA 1KHKA 5L0KA 5DLWA 3TWZA 1ALJA 5L0EA 3DYCA 4B56A 3M8WA 3T01A 4KJGA 1URAA 3A52A 3E2DA 1E33P 5DLTA 1Y6VA 4CXKA 4LRCA 1ALIA 1EW8A 3UN2A 1AJAA 1EQJA 5LQQA 2XRGA 1HQAA 2W8DA 3TX0A 3NKPA 4FDJA 4GTYA 1AJDA 4LR7A 2W5RA 2VQRA 1EW2A 1N2KA 1P49A 4LQYA 2XR9A 4ZGAA 4CXUA 2IFYA 1ALHA 4GTXA 3T02A 5INHA 3WBHA 4QAXA 4KJDA 4CYRA 4GTZA 3BDGA 3M7VA 4UOPA 5DLVA 1EI6A 4MIVA 2IUCA 3ED4A 1AJBA 5HRTA 1AJCA 4KM4A 1ZEDA 1HDHA 4LRBA 4UPHA 4ZG6A 3KD8A 4NWXA 5EGHA 1ELXA 3SZYA 3DPCA 1ANJA 2GA3A 3UNYA 4LR8A 1Y7AA 4LR2A 1ELYA 1FSUA 2X98A 3BDFA 3WAXA 5LRMA 4UPKA 1N2LA 2QZUA 1ED8A 2ZKTA 4ZG9A 4GTWA 1SHNA 1URBA 3SZZA 2GSOA 1E1ZP 3IDDA 1KH9A 5GRRA 1KH7A 2G9YA 1O98A 4CYSA 3M8ZA 4LREA 4LRAA 2IUCB 4LRFA 1KHNA 1K7HA 5L0BA 2W5TA 3BDGB 1ELZA 4YR1A 3CMRA
chains in the Genus database with same CATH superfamily
1SHQA 5LRNA 2W5WA 2W5SA 1ZEBA 4MHXA 1ZEFA 2W5QA 3NKRA 5EGEA 2D1GA 2W5XA 3T00A 3UO0A 3M8YA 3BDHA 5K4PA 3WAVA 3TG0A 5IJQA 1EJJA 2GSUA 1O99A 2ANHA 3OT9A 3Q3QA 3MK2A 1B8JA 4KAVA 4UPLA 1EW9A 3NKQA 4LR9A 2GLQA 5KXAA 5IJSA 4KAYA 4UORA 5AJ9A 5TJ3A 3MK1A 4TN0A 4LRDA 3NVLA 1ALKA 1KH4A 3B5QA 1KH5A 3LXQA 3IGYB 1ANIA 1HJKA 1E3CP 5C66A 3WAWA 3MK0A 4NWJA 3NKNA 3IGZB 5GOVA 3WAYA 1AUKA 1ED9A 3NKOA 2RH6A 3UN3A 1KHLA 4MY4A 3NKMA 2GSNA 4CXSA 4N7TA 2W8SA 4FDIA 4UOOA 3UN5A 4ZG7A 1E2SP 4UPIA 5LIAA 1KHJA 2W5VA 1KHKA 5L0KA 5DLWA 3TWZA 1ALJA 5L0EA 3DYCA 4B56A 3M8WA 3T01A 4KJGA 1URAA 3A52A 3E2DA 1E33P 5DLTA 1Y6VA 4CXKA 4LRCA 1ALIA 1EW8A 3UN2A 1AJAA 1EQJA 5LQQA 2XRGA 1HQAA 2W8DA 3TX0A 3NKPA 4FDJA 4GTYA 1AJDA 4LR7A 2W5RA 2VQRA 1EW2A 1N2KA 1P49A 4LQYA 2XR9A 4ZGAA 4CXUA 2IFYA 1ALHA 4GTXA 3T02A 5INHA 3WBHA 4QAXA 4KJDA 4CYRA 4GTZA 3BDGA 3M7VA 4UOPA 5DLVA 1EI6A 4MIVA 2IUCA 3ED4A 1AJBA 5HRTA 1AJCA 4KM4A 1ZEDA 1HDHA 4LRBA 4UPHA 4ZG6A 3KD8A 4NWXA 5EGHA 1ELXA 3SZYA 3DPCA 1ANJA 2GA3A 3UNYA 4LR8A 1Y7AA 4LR2A 1ELYA 1FSUA 2X98A 3BDFA 3WAXA 5LRMA 4UPKA 1N2LA 2QZUA 1ED8A 2ZKTA 4ZG9A 4GTWA 1SHNA 1URBA 3SZZA 2GSOA 1E1ZP 3IDDA 1KH9A 5GRRA 1KH7A 2G9YA 1O98A 4CYSA 3M8ZA 4LREA 4LRAA 2IUCB 4LRFA 1KHNA 1K7HA 5L0BA 2W5TA 3BDGB 1ELZA 4YR1A 3CMRA
chains in the Genus database with same CATH topology
1SHQA 5LRNA 2W5WA 2W5SA 1ZEBA 4MHXA 1ZEFA 2W5QA 3NKRA 5EGEA 2D1GA 2W5XA 3T00A 3UO0A 3M8YA 3BDHA 5K4PA 3WAVA 3TG0A 5IJQA 1EJJA 2GSUA 1O99A 2ANHA 3OT9A 3Q3QA 3MK2A 1B8JA 4KAVA 4UPLA 1EW9A 3NKQA 4LR9A 2GLQA 5KXAA 5IJSA 4KAYA 4UORA 5AJ9A 5TJ3A 3MK1A 4TN0A 4LRDA 3NVLA 1ALKA 1KH4A 3B5QA 1KH5A 3LXQA 3IGYB 1ANIA 1HJKA 1E3CP 5C66A 3WAWA 3MK0A 4NWJA 3NKNA 3IGZB 5GOVA 3WAYA 1AUKA 1ED9A 3NKOA 2RH6A 3UN3A 1KHLA 4MY4A 3NKMA 2GSNA 4CXSA 4N7TA 2W8SA 4FDIA 4UOOA 3UN5A 4ZG7A 1E2SP 4UPIA 5LIAA 1KHJA 2W5VA 1KHKA 5L0KA 5DLWA 3TWZA 1ALJA 5L0EA 3DYCA 4B56A 3M8WA 3T01A 4KJGA 1URAA 3A52A 3E2DA 1E33P 5DLTA 1Y6VA 4CXKA 4LRCA 1ALIA 1EW8A 3UN2A 1AJAA 1EQJA 5LQQA 2XRGA 1HQAA 2W8DA 3TX0A 3NKPA 4FDJA 4GTYA 1AJDA 4LR7A 2W5RA 2VQRA 1EW2A 1N2KA 1P49A 4LQYA 2XR9A 4ZGAA 4CXUA 2IFYA 1ALHA 4GTXA 3T02A 5INHA 3WBHA 4QAXA 4KJDA 4CYRA 4GTZA 3BDGA 3M7VA 4UOPA 5DLVA 1EI6A 4MIVA 2IUCA 3ED4A 1AJBA 5HRTA 1AJCA 4KM4A 1ZEDA 1HDHA 4LRBA 4UPHA 4ZG6A 3KD8A 4NWXA 5EGHA 1ELXA 3SZYA 3DPCA 1ANJA 2GA3A 3UNYA 4LR8A 1Y7AA 4LR2A 1ELYA 1FSUA 2X98A 3BDFA 3WAXA 5LRMA 4UPKA 1N2LA 2QZUA 1ED8A 2ZKTA 4ZG9A 4GTWA 1SHNA 1URBA 3SZZA 2GSOA 1E1ZP 3IDDA 1KH9A 5GRRA 1KH7A 2G9YA 1O98A 4CYSA 3M8ZA 4LREA 4LRAA 2IUCB 4LRFA 1KHNA 1K7HA 5L0BA 2W5TA 3BDGB 1ELZA 4YR1A 3CMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SHQ A;  5LRN A;  2W5W A;  2W5S A;  1ZEB A;  4MHX A;  1ZEF A;  2W5Q A;  3NKR A;  5EGE A;  2D1G A;  2W5X A;  3T00 A;  3UO0 A;  3M8Y A;  3BDH A;  5K4P A;  3WAV A;  3TG0 A;  5IJQ A;  1EJJ A;  2GSU A;  1O99 A;  2ANH A;  3OT9 A;  3Q3Q A;  3MK2 A;  1B8J A;  4KAV A;  4UPL A;  1EW9 A;  3NKQ A;  4LR9 A;  2GLQ A;  5KXA A;  5IJS A;  4KAY A;  4UOR A;  5AJ9 A;  5TJ3 A;  3MK1 A;  4TN0 A;  4LRD A;  3NVL A;  1ALK A;  1KH4 A;  3B5Q A;  1KH5 A;  3LXQ A;  3IGY B;  1ANI A;  1HJK A;  1E3C P;  5C66 A;  3WAW A;  3MK0 A;  4NWJ A;  3NKN A;  3IGZ B;  5GOV A;  3WAY A;  1AUK A;  1ED9 A;  3NKO A;  2RH6 A;  3UN3 A;  1KHL A;  4MY4 A;  3NKM A;  2GSN A;  4CXS A;  4N7T A;  2W8S A;  4FDI A;  4UOO A;  3UN5 A;  4ZG7 A;  1E2S P;  4UPI A;  5LIA A;  1KHJ A;  2W5V A;  1KHK A;  5L0K A;  5DLW A;  3TWZ A;  1ALJ A;  5L0E A;  3DYC A;  4B56 A;  3M8W A;  3T01 A;  4KJG A;  1URA A;  3A52 A;  3E2D A;  1E33 P;  5DLT A;  1Y6V A;  4CXK A;  4LRC A;  1ALI A;  1EW8 A;  3UN2 A;  1AJA A;  1EQJ A;  5LQQ A;  2XRG A;  1HQA A;  2W8D A;  3TX0 A;  3NKP A;  4FDJ A;  4GTY A;  1AJD A;  4LR7 A;  2W5R A;  2VQR A;  1EW2 A;  1N2K A;  1P49 A;  4LQY A;  2XR9 A;  4ZGA A;  4CXU A;  2IFY A;  1ALH A;  4GTX A;  3T02 A;  5INH A;  3WBH A;  4QAX A;  4KJD A;  4CYR A;  4GTZ A;  3BDG A;  3M7V A;  4UOP A;  5DLV A;  1EI6 A;  4MIV A;  2IUC A;  3ED4 A;  1AJB A;  5HRT A;  1AJC A;  4KM4 A;  1ZED A;  1HDH A;  4LRB A;  4UPH A;  4ZG6 A;  3KD8 A;  4NWX A;  5EGH A;  1ELX A;  3SZY A;  3DPC A;  1ANJ A;  2GA3 A;  3UNY A;  4LR8 A;  1Y7A A;  4LR2 A;  1ELY A;  1FSU A;  2X98 A;  3BDF A;  3WAX A;  5LRM A;  4UPK A;  1N2L A;  2QZU A;  1ED8 A;  2ZKT A;  4ZG9 A;  4GTW A;  1SHN A;  1URB A;  3SZZ A;  2GSO A;  1E1Z P;  3IDD A;  1KH9 A;  5GRR A;  1KH7 A;  2G9Y A;  1O98 A;  4CYS A;  3M8Z A;  4LRE A;  4LRA A;  2IUC B;  4LRF A;  1KHN A;  1K7H A;  5L0B A;  2W5T A;  3BDG B;  1ELZ A;  4YR1 A;  3CMR A; 
#chains in the Genus database with same CATH topology
 1SHQ A;  5LRN A;  2W5W A;  2W5S A;  1ZEB A;  4MHX A;  1ZEF A;  2W5Q A;  3NKR A;  5EGE A;  2D1G A;  2W5X A;  3T00 A;  3UO0 A;  3M8Y A;  3BDH A;  5K4P A;  3WAV A;  3TG0 A;  5IJQ A;  1EJJ A;  2GSU A;  1O99 A;  2ANH A;  3OT9 A;  3Q3Q A;  3MK2 A;  1B8J A;  4KAV A;  4UPL A;  1EW9 A;  3NKQ A;  4LR9 A;  2GLQ A;  5KXA A;  5IJS A;  4KAY A;  4UOR A;  5AJ9 A;  5TJ3 A;  3MK1 A;  4TN0 A;  4LRD A;  3NVL A;  1ALK A;  1KH4 A;  3B5Q A;  1KH5 A;  3LXQ A;  3IGY B;  1ANI A;  1HJK A;  1E3C P;  5C66 A;  3WAW A;  3MK0 A;  4NWJ A;  3NKN A;  3IGZ B;  5GOV A;  3WAY A;  1AUK A;  1ED9 A;  3NKO A;  2RH6 A;  3UN3 A;  1KHL A;  4MY4 A;  3NKM A;  2GSN A;  4CXS A;  4N7T A;  2W8S A;  4FDI A;  4UOO A;  3UN5 A;  4ZG7 A;  1E2S P;  4UPI A;  5LIA A;  1KHJ A;  2W5V A;  1KHK A;  5L0K A;  5DLW A;  3TWZ A;  1ALJ A;  5L0E A;  3DYC A;  4B56 A;  3M8W A;  3T01 A;  4KJG A;  1URA A;  3A52 A;  3E2D A;  1E33 P;  5DLT A;  1Y6V A;  4CXK A;  4LRC A;  1ALI A;  1EW8 A;  3UN2 A;  1AJA A;  1EQJ A;  5LQQ A;  2XRG A;  1HQA A;  2W8D A;  3TX0 A;  3NKP A;  4FDJ A;  4GTY A;  1AJD A;  4LR7 A;  2W5R A;  2VQR A;  1EW2 A;  1N2K A;  1P49 A;  4LQY A;  2XR9 A;  4ZGA A;  4CXU A;  2IFY A;  1ALH A;  4GTX A;  3T02 A;  5INH A;  3WBH A;  4QAX A;  4KJD A;  4CYR A;  4GTZ A;  3BDG A;  3M7V A;  4UOP A;  5DLV A;  1EI6 A;  4MIV A;  2IUC A;  3ED4 A;  1AJB A;  5HRT A;  1AJC A;  4KM4 A;  1ZED A;  1HDH A;  4LRB A;  4UPH A;  4ZG6 A;  3KD8 A;  4NWX A;  5EGH A;  1ELX A;  3SZY A;  3DPC A;  1ANJ A;  2GA3 A;  3UNY A;  4LR8 A;  1Y7A A;  4LR2 A;  1ELY A;  1FSU A;  2X98 A;  3BDF A;  3WAX A;  5LRM A;  4UPK A;  1N2L A;  2QZU A;  1ED8 A;  2ZKT A;  4ZG9 A;  4GTW A;  1SHN A;  1URB A;  3SZZ A;  2GSO A;  1E1Z P;  3IDD A;  1KH9 A;  5GRR A;  1KH7 A;  2G9Y A;  1O98 A;  4CYS A;  3M8Z A;  4LRE A;  4LRA A;  2IUC B;  4LRF A;  1KHN A;  1K7H A;  5L0B A;  2W5T A;  3BDG B;  1ELZ A;  4YR1 A;  3CMR A; 
#chains in the Genus database with same CATH homology
 1SHQ A;  5LRN A;  2W5W A;  2W5S A;  1ZEB A;  4MHX A;  1ZEF A;  2W5Q A;  3NKR A;  5EGE A;  2D1G A;  2W5X A;  3T00 A;  3UO0 A;  3M8Y A;  3BDH A;  5K4P A;  3WAV A;  3TG0 A;  5IJQ A;  1EJJ A;  2GSU A;  1O99 A;  2ANH A;  3OT9 A;  3Q3Q A;  3MK2 A;  1B8J A;  4KAV A;  4UPL A;  1EW9 A;  3NKQ A;  4LR9 A;  2GLQ A;  5KXA A;  5IJS A;  4KAY A;  4UOR A;  5AJ9 A;  5TJ3 A;  3MK1 A;  4TN0 A;  4LRD A;  3NVL A;  1ALK A;  1KH4 A;  3B5Q A;  1KH5 A;  3LXQ A;  3IGY B;  1ANI A;  1HJK A;  1E3C P;  5C66 A;  3WAW A;  3MK0 A;  4NWJ A;  3NKN A;  3IGZ B;  5GOV A;  3WAY A;  1AUK A;  1ED9 A;  3NKO A;  2RH6 A;  3UN3 A;  1KHL A;  4MY4 A;  3NKM A;  2GSN A;  4CXS A;  4N7T A;  2W8S A;  4FDI A;  4UOO A;  3UN5 A;  4ZG7 A;  1E2S P;  4UPI A;  5LIA A;  1KHJ A;  2W5V A;  1KHK A;  5L0K A;  5DLW A;  3TWZ A;  1ALJ A;  5L0E A;  3DYC A;  4B56 A;  3M8W A;  3T01 A;  4KJG A;  1URA A;  3A52 A;  3E2D A;  1E33 P;  5DLT A;  1Y6V A;  4CXK A;  4LRC A;  1ALI A;  1EW8 A;  3UN2 A;  1AJA A;  1EQJ A;  5LQQ A;  2XRG A;  1HQA A;  2W8D A;  3TX0 A;  3NKP A;  4FDJ A;  4GTY A;  1AJD A;  4LR7 A;  2W5R A;  2VQR A;  1EW2 A;  1N2K A;  1P49 A;  4LQY A;  2XR9 A;  4ZGA A;  4CXU A;  2IFY A;  1ALH A;  4GTX A;  3T02 A;  5INH A;  3WBH A;  4QAX A;  4KJD A;  4CYR A;  4GTZ A;  3BDG A;  3M7V A;  4UOP A;  5DLV A;  1EI6 A;  4MIV A;  2IUC A;  3ED4 A;  1AJB A;  5HRT A;  1AJC A;  4KM4 A;  1ZED A;  1HDH A;  4LRB A;  4UPH A;  4ZG6 A;  3KD8 A;  4NWX A;  5EGH A;  1ELX A;  3SZY A;  3DPC A;  1ANJ A;  2GA3 A;  3UNY A;  4LR8 A;  1Y7A A;  4LR2 A;  1ELY A;  1FSU A;  2X98 A;  3BDF A;  3WAX A;  5LRM A;  4UPK A;  1N2L A;  2QZU A;  1ED8 A;  2ZKT A;  4ZG9 A;  4GTW A;  1SHN A;  1URB A;  3SZZ A;  2GSO A;  1E1Z P;  3IDD A;  1KH9 A;  5GRR A;  1KH7 A;  2G9Y A;  1O98 A;  4CYS A;  3M8Z A;  4LRE A;  4LRA A;  2IUC B;  4LRF A;  1KHN A;  1K7H A;  5L0B A;  2W5T A;  3BDG B;  1ELZ A;  4YR1 A;  3CMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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