2W5RA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 168
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKASDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
source organism Staphylococcus aureus
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
total genus 168
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5rA02
5EGEA 4CYSA 1EJJA 5IJSA 1URBA 2XRGA 3MK0A 3B5QA 5GRRA 2IFYA 1K7HA 1AJDA 3NKMA 1ANJA 1KH7A 3IGZB 1EQJA 4GTYA 2IUCB 2VQRA 4QAXA 1P49A 1B8JA 5TJ3A 1KHKA 4N7TA 1KH5A 3BDGB 3DYCA 3LXQA 3DPCA 3ED4A 4LRFA 1EI6A 1SHNA 1HDHA 4KM4A 4MHXA 4KJGA 1URAA 4MIVA 1ED8A 1E33P 3UN5A 3SZYA 4LR9A 2W5TA 2G9YA 4CXSA 3Q3QA 3TG0A 4CYRA 5HRTA 5LRNA 3KD8A 2GSNA 2W8SA 4LRCA 2W5XA 1ELXA 3NKPA 3MK2A 4LREA 4LR2A 1N2KA 1Y7AA 4CXKA 1AJBA 1HJKA 3WAWA 5AJ9A 4ZG7A 4GTWA 3UNYA 3TWZA 2ZKTA 5K4PA 2QZUA 3WAVA 1ALIA 4KAYA 4UOOA 1ELZA 4GTXA 1KH4A 1KH9A 5LRMA 4ZGAA 2GA3A 1Y6VA 2RH6A 4UPHA 4UOPA 3UO0A 5LQQA 4CXUA 2D1GA 4KAVA 4FDIA 4LR8A 1ALKA 1ZEBA 3IDDA 1KHLA 5L0BA 2GSUA 4UORA 3SZZA 3BDHA 1KHJA 3M8WA 1ANIA 1EW9A 1AJCA 2X98A 5GOVA 3WAYA 4UPLA 3NKNA 1ZEFA 4LRAA 4GTZA 4NWJA 4YR1A 1O99A 1ALJA 1SHQA 4NWXA 3CMRA 1KHNA 1O98A 3IGYB 3UN3A 1E1ZP 1ELYA 2W8DA 5EGHA 3WAXA 2GLQA 4ZG9A 3T00A 1E2SP 5INHA 1ZEDA 2XR9A 2GSOA 1ED9A 4LQYA 4ZG6A 3MK1A 4FDJA 2IUCA 5DLWA 2W5VA 1AJAA 3M7VA 5L0KA 3BDFA 3WBHA 5C66A 1EW8A 4UPIA 2W5WA 3BDGA 5IJQA 2W5RA 3T01A 1ALHA 3A52A 3UN2A 3NVLA 1EW2A 4UPKA 5L0EA 1HQAA 2W5SA 5DLVA 3TX0A 4KJDA 1N2LA 4LR7A 3NKOA 1AUKA 1E3CP 2ANHA 5KXAA 3M8ZA 4LRDA 3NKQA 2W5QA 4B56A 5LIAA 3OT9A 4TN0A 3NKRA 4MY4A 3T02A 3E2DA 4LRBA 1FSUA 3M8YA 5DLTA
chains in the Genus database with same CATH superfamily
5EGEA 4CYSA 1EJJA 5IJSA 1URBA 2XRGA 3MK0A 3B5QA 5GRRA 2IFYA 1K7HA 1AJDA 3NKMA 1ANJA 1KH7A 3IGZB 1EQJA 4GTYA 2IUCB 2VQRA 4QAXA 1P49A 1B8JA 5TJ3A 1KHKA 4N7TA 1KH5A 3BDGB 3DYCA 3LXQA 3DPCA 3ED4A 4LRFA 1EI6A 1SHNA 1HDHA 4KM4A 4MHXA 4KJGA 1URAA 4MIVA 1ED8A 1E33P 3UN5A 3SZYA 4LR9A 2W5TA 2G9YA 4CXSA 3Q3QA 3TG0A 4CYRA 5HRTA 5LRNA 3KD8A 2GSNA 2W8SA 4LRCA 2W5XA 1ELXA 3NKPA 3MK2A 4LREA 4LR2A 1N2KA 1Y7AA 4CXKA 1AJBA 1HJKA 3WAWA 5AJ9A 4ZG7A 4GTWA 3UNYA 3TWZA 2ZKTA 5K4PA 2QZUA 3WAVA 1ALIA 4KAYA 4UOOA 1ELZA 4GTXA 1KH4A 1KH9A 5LRMA 4ZGAA 2GA3A 1Y6VA 2RH6A 4UPHA 4UOPA 3UO0A 5LQQA 4CXUA 2D1GA 4KAVA 4FDIA 4LR8A 1ALKA 1ZEBA 3IDDA 1KHLA 5L0BA 2GSUA 4UORA 3SZZA 3BDHA 1KHJA 3M8WA 1ANIA 1EW9A 1AJCA 2X98A 5GOVA 3WAYA 4UPLA 3NKNA 1ZEFA 4LRAA 4GTZA 4NWJA 4YR1A 1O99A 1ALJA 1SHQA 4NWXA 3CMRA 1KHNA 1O98A 3IGYB 3UN3A 1E1ZP 1ELYA 2W8DA 5EGHA 3WAXA 2GLQA 4ZG9A 3T00A 1E2SP 5INHA 1ZEDA 2XR9A 2GSOA 1ED9A 4LQYA 4ZG6A 3MK1A 4FDJA 2IUCA 5DLWA 2W5VA 1AJAA 3M7VA 5L0KA 3BDFA 3WBHA 5C66A 1EW8A 4UPIA 2W5WA 3BDGA 5IJQA 2W5RA 3T01A 1ALHA 3A52A 3UN2A 3NVLA 1EW2A 4UPKA 5L0EA 1HQAA 2W5SA 5DLVA 3TX0A 4KJDA 1N2LA 4LR7A 3NKOA 1AUKA 1E3CP 2ANHA 5KXAA 3M8ZA 4LRDA 3NKQA 2W5QA 4B56A 5LIAA 3OT9A 4TN0A 3NKRA 4MY4A 3T02A 3E2DA 4LRBA 1FSUA 3M8YA 5DLTA
chains in the Genus database with same CATH topology
5EGEA 4CYSA 1EJJA 5IJSA 1URBA 2XRGA 3MK0A 3B5QA 5GRRA 2IFYA 1K7HA 1AJDA 3NKMA 1ANJA 1KH7A 3IGZB 1EQJA 4GTYA 2IUCB 2VQRA 4QAXA 1P49A 1B8JA 5TJ3A 1KHKA 4N7TA 1KH5A 3BDGB 3DYCA 3LXQA 3DPCA 3ED4A 4LRFA 1EI6A 1SHNA 1HDHA 4KM4A 4MHXA 4KJGA 1URAA 4MIVA 1ED8A 1E33P 3UN5A 3SZYA 4LR9A 2W5TA 2G9YA 4CXSA 3Q3QA 3TG0A 4CYRA 5HRTA 5LRNA 3KD8A 2GSNA 2W8SA 4LRCA 2W5XA 1ELXA 3NKPA 3MK2A 4LREA 4LR2A 1N2KA 1Y7AA 4CXKA 1AJBA 1HJKA 3WAWA 5AJ9A 4ZG7A 4GTWA 3UNYA 3TWZA 2ZKTA 5K4PA 2QZUA 3WAVA 1ALIA 4KAYA 4UOOA 1ELZA 4GTXA 1KH4A 1KH9A 5LRMA 4ZGAA 2GA3A 1Y6VA 2RH6A 4UPHA 4UOPA 3UO0A 5LQQA 4CXUA 2D1GA 4KAVA 4FDIA 4LR8A 1ALKA 1ZEBA 3IDDA 1KHLA 5L0BA 2GSUA 4UORA 3SZZA 3BDHA 1KHJA 3M8WA 1ANIA 1EW9A 1AJCA 2X98A 5GOVA 3WAYA 4UPLA 3NKNA 1ZEFA 4LRAA 4GTZA 4NWJA 4YR1A 1O99A 1ALJA 1SHQA 4NWXA 3CMRA 1KHNA 1O98A 3IGYB 3UN3A 1E1ZP 1ELYA 2W8DA 5EGHA 3WAXA 2GLQA 4ZG9A 3T00A 1E2SP 5INHA 1ZEDA 2XR9A 2GSOA 1ED9A 4LQYA 4ZG6A 3MK1A 4FDJA 2IUCA 5DLWA 2W5VA 1AJAA 3M7VA 5L0KA 3BDFA 3WBHA 5C66A 1EW8A 4UPIA 2W5WA 3BDGA 5IJQA 2W5RA 3T01A 1ALHA 3A52A 3UN2A 3NVLA 1EW2A 4UPKA 5L0EA 1HQAA 2W5SA 5DLVA 3TX0A 4KJDA 1N2LA 4LR7A 3NKOA 1AUKA 1E3CP 2ANHA 5KXAA 3M8ZA 4LRDA 3NKQA 2W5QA 4B56A 5LIAA 3OT9A 4TN0A 3NKRA 4MY4A 3T02A 3E2DA 4LRBA 1FSUA 3M8YA 5DLTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EGE A;  4CYS A;  1EJJ A;  5IJS A;  1URB A;  2XRG A;  3MK0 A;  3B5Q A;  5GRR A;  2IFY A;  1K7H A;  1AJD A;  3NKM A;  1ANJ A;  1KH7 A;  3IGZ B;  1EQJ A;  4GTY A;  2IUC B;  2VQR A;  4QAX A;  1P49 A;  1B8J A;  5TJ3 A;  1KHK A;  4N7T A;  1KH5 A;  3BDG B;  3DYC A;  3LXQ A;  3DPC A;  3ED4 A;  4LRF A;  1EI6 A;  1SHN A;  1HDH A;  4KM4 A;  4MHX A;  4KJG A;  1URA A;  4MIV A;  1ED8 A;  1E33 P;  3UN5 A;  3SZY A;  4LR9 A;  2W5T A;  2G9Y A;  4CXS A;  3Q3Q A;  3TG0 A;  4CYR A;  5HRT A;  5LRN A;  3KD8 A;  2GSN A;  2W8S A;  4LRC A;  2W5X A;  1ELX A;  3NKP A;  3MK2 A;  4LRE A;  4LR2 A;  1N2K A;  1Y7A A;  4CXK A;  1AJB A;  1HJK A;  3WAW A;  5AJ9 A;  4ZG7 A;  4GTW A;  3UNY A;  3TWZ A;  2ZKT A;  5K4P A;  2QZU A;  3WAV A;  1ALI A;  4KAY A;  4UOO A;  1ELZ A;  4GTX A;  1KH4 A;  1KH9 A;  5LRM A;  4ZGA A;  2GA3 A;  1Y6V A;  2RH6 A;  4UPH A;  4UOP A;  3UO0 A;  5LQQ A;  4CXU A;  2D1G A;  4KAV A;  4FDI A;  4LR8 A;  1ALK A;  1ZEB A;  3IDD A;  1KHL A;  5L0B A;  2GSU A;  4UOR A;  3SZZ A;  3BDH A;  1KHJ A;  3M8W A;  1ANI A;  1EW9 A;  1AJC A;  2X98 A;  5GOV A;  3WAY A;  4UPL A;  3NKN A;  1ZEF A;  4LRA A;  4GTZ A;  4NWJ A;  4YR1 A;  1O99 A;  1ALJ A;  1SHQ A;  4NWX A;  3CMR A;  1KHN A;  1O98 A;  3IGY B;  3UN3 A;  1E1Z P;  1ELY A;  2W8D A;  5EGH A;  3WAX A;  2GLQ A;  4ZG9 A;  3T00 A;  1E2S P;  5INH A;  1ZED A;  2XR9 A;  2GSO A;  1ED9 A;  4LQY A;  4ZG6 A;  3MK1 A;  4FDJ A;  2IUC A;  5DLW A;  2W5V A;  1AJA A;  3M7V A;  5L0K A;  3BDF A;  3WBH A;  5C66 A;  1EW8 A;  4UPI A;  2W5W A;  3BDG A;  5IJQ A;  2W5R A;  3T01 A;  1ALH A;  3A52 A;  3UN2 A;  3NVL A;  1EW2 A;  4UPK A;  5L0E A;  1HQA A;  2W5S A;  5DLV A;  3TX0 A;  4KJD A;  1N2L A;  4LR7 A;  3NKO A;  1AUK A;  1E3C P;  2ANH A;  5KXA A;  3M8Z A;  4LRD A;  3NKQ A;  2W5Q A;  4B56 A;  5LIA A;  3OT9 A;  4TN0 A;  3NKR A;  4MY4 A;  3T02 A;  3E2D A;  4LRB A;  1FSU A;  3M8Y A;  5DLT A; 
#chains in the Genus database with same CATH topology
 5EGE A;  4CYS A;  1EJJ A;  5IJS A;  1URB A;  2XRG A;  3MK0 A;  3B5Q A;  5GRR A;  2IFY A;  1K7H A;  1AJD A;  3NKM A;  1ANJ A;  1KH7 A;  3IGZ B;  1EQJ A;  4GTY A;  2IUC B;  2VQR A;  4QAX A;  1P49 A;  1B8J A;  5TJ3 A;  1KHK A;  4N7T A;  1KH5 A;  3BDG B;  3DYC A;  3LXQ A;  3DPC A;  3ED4 A;  4LRF A;  1EI6 A;  1SHN A;  1HDH A;  4KM4 A;  4MHX A;  4KJG A;  1URA A;  4MIV A;  1ED8 A;  1E33 P;  3UN5 A;  3SZY A;  4LR9 A;  2W5T A;  2G9Y A;  4CXS A;  3Q3Q A;  3TG0 A;  4CYR A;  5HRT A;  5LRN A;  3KD8 A;  2GSN A;  2W8S A;  4LRC A;  2W5X A;  1ELX A;  3NKP A;  3MK2 A;  4LRE A;  4LR2 A;  1N2K A;  1Y7A A;  4CXK A;  1AJB A;  1HJK A;  3WAW A;  5AJ9 A;  4ZG7 A;  4GTW A;  3UNY A;  3TWZ A;  2ZKT A;  5K4P A;  2QZU A;  3WAV A;  1ALI A;  4KAY A;  4UOO A;  1ELZ A;  4GTX A;  1KH4 A;  1KH9 A;  5LRM A;  4ZGA A;  2GA3 A;  1Y6V A;  2RH6 A;  4UPH A;  4UOP A;  3UO0 A;  5LQQ A;  4CXU A;  2D1G A;  4KAV A;  4FDI A;  4LR8 A;  1ALK A;  1ZEB A;  3IDD A;  1KHL A;  5L0B A;  2GSU A;  4UOR A;  3SZZ A;  3BDH A;  1KHJ A;  3M8W A;  1ANI A;  1EW9 A;  1AJC A;  2X98 A;  5GOV A;  3WAY A;  4UPL A;  3NKN A;  1ZEF A;  4LRA A;  4GTZ A;  4NWJ A;  4YR1 A;  1O99 A;  1ALJ A;  1SHQ A;  4NWX A;  3CMR A;  1KHN A;  1O98 A;  3IGY B;  3UN3 A;  1E1Z P;  1ELY A;  2W8D A;  5EGH A;  3WAX A;  2GLQ A;  4ZG9 A;  3T00 A;  1E2S P;  5INH A;  1ZED A;  2XR9 A;  2GSO A;  1ED9 A;  4LQY A;  4ZG6 A;  3MK1 A;  4FDJ A;  2IUC A;  5DLW A;  2W5V A;  1AJA A;  3M7V A;  5L0K A;  3BDF A;  3WBH A;  5C66 A;  1EW8 A;  4UPI A;  2W5W A;  3BDG A;  5IJQ A;  2W5R A;  3T01 A;  1ALH A;  3A52 A;  3UN2 A;  3NVL A;  1EW2 A;  4UPK A;  5L0E A;  1HQA A;  2W5S A;  5DLV A;  3TX0 A;  4KJD A;  1N2L A;  4LR7 A;  3NKO A;  1AUK A;  1E3C P;  2ANH A;  5KXA A;  3M8Z A;  4LRD A;  3NKQ A;  2W5Q A;  4B56 A;  5LIA A;  3OT9 A;  4TN0 A;  3NKR A;  4MY4 A;  3T02 A;  3E2D A;  4LRB A;  1FSU A;  3M8Y A;  5DLT A; 
#chains in the Genus database with same CATH homology
 5EGE A;  4CYS A;  1EJJ A;  5IJS A;  1URB A;  2XRG A;  3MK0 A;  3B5Q A;  5GRR A;  2IFY A;  1K7H A;  1AJD A;  3NKM A;  1ANJ A;  1KH7 A;  3IGZ B;  1EQJ A;  4GTY A;  2IUC B;  2VQR A;  4QAX A;  1P49 A;  1B8J A;  5TJ3 A;  1KHK A;  4N7T A;  1KH5 A;  3BDG B;  3DYC A;  3LXQ A;  3DPC A;  3ED4 A;  4LRF A;  1EI6 A;  1SHN A;  1HDH A;  4KM4 A;  4MHX A;  4KJG A;  1URA A;  4MIV A;  1ED8 A;  1E33 P;  3UN5 A;  3SZY A;  4LR9 A;  2W5T A;  2G9Y A;  4CXS A;  3Q3Q A;  3TG0 A;  4CYR A;  5HRT A;  5LRN A;  3KD8 A;  2GSN A;  2W8S A;  4LRC A;  2W5X A;  1ELX A;  3NKP A;  3MK2 A;  4LRE A;  4LR2 A;  1N2K A;  1Y7A A;  4CXK A;  1AJB A;  1HJK A;  3WAW A;  5AJ9 A;  4ZG7 A;  4GTW A;  3UNY A;  3TWZ A;  2ZKT A;  5K4P A;  2QZU A;  3WAV A;  1ALI A;  4KAY A;  4UOO A;  1ELZ A;  4GTX A;  1KH4 A;  1KH9 A;  5LRM A;  4ZGA A;  2GA3 A;  1Y6V A;  2RH6 A;  4UPH A;  4UOP A;  3UO0 A;  5LQQ A;  4CXU A;  2D1G A;  4KAV A;  4FDI A;  4LR8 A;  1ALK A;  1ZEB A;  3IDD A;  1KHL A;  5L0B A;  2GSU A;  4UOR A;  3SZZ A;  3BDH A;  1KHJ A;  3M8W A;  1ANI A;  1EW9 A;  1AJC A;  2X98 A;  5GOV A;  3WAY A;  4UPL A;  3NKN A;  1ZEF A;  4LRA A;  4GTZ A;  4NWJ A;  4YR1 A;  1O99 A;  1ALJ A;  1SHQ A;  4NWX A;  3CMR A;  1KHN A;  1O98 A;  3IGY B;  3UN3 A;  1E1Z P;  1ELY A;  2W8D A;  5EGH A;  3WAX A;  2GLQ A;  4ZG9 A;  3T00 A;  1E2S P;  5INH A;  1ZED A;  2XR9 A;  2GSO A;  1ED9 A;  4LQY A;  4ZG6 A;  3MK1 A;  4FDJ A;  2IUC A;  5DLW A;  2W5V A;  1AJA A;  3M7V A;  5L0K A;  3BDF A;  3WBH A;  5C66 A;  1EW8 A;  4UPI A;  2W5W A;  3BDG A;  5IJQ A;  2W5R A;  3T01 A;  1ALH A;  3A52 A;  3UN2 A;  3NVL A;  1EW2 A;  4UPK A;  5L0E A;  1HQA A;  2W5S A;  5DLV A;  3TX0 A;  4KJD A;  1N2L A;  4LR7 A;  3NKO A;  1AUK A;  1E3C P;  2ANH A;  5KXA A;  3M8Z A;  4LRD A;  3NKQ A;  2W5Q A;  4B56 A;  5LIA A;  3OT9 A;  4TN0 A;  3NKR A;  4MY4 A;  3T02 A;  3E2D A;  4LRB A;  1FSU A;  3M8Y A;  5DLT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...