2W5RA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKASDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 168
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5rA02
1ZEDA 3NVLA 1SHNA 4LRDA 2W5SA 3MK1A 1O99A 2GLQA 4ZG6A 2D1GA 4KJDA 1O98A 3M8WA 4MHXA 1Y6VA 2XR9A 1AJAA 5AJ9A 4ZG7A 3WAYA 5L0BA 1ELXA 1ALHA 5DLTA 1EQJA 1AUKA 1N2KA 4NWXA 3MK0A 2ZKTA 4CYSA 3UN3A 3M8ZA 3OT9A 5GRRA 5LRNA 3CMRA 4LQYA 1FSUA 4NWJA 4GTXA 5K4PA 5DLVA 1ALIA 4UORA 5LQQA 1B8JA 3T02A 5TJ3A 1KH9A 4ZG9A 2G9YA 3DPCA 1ALKA 2W5WA 4TN0A 4UOOA 3WAWA 3KD8A 3LXQA 1K7HA 1KHJA 2IUCB 4UPHA 4LR2A 3UNYA 3WAVA 1ED8A 2GSUA 1KH5A 2W5XA 3A52A 4LRAA 5DLWA 1ANJA 3IDDA 3IGZB 1EW9A 4FDJA 3WAXA 2W5TA 3BDGB 1SHQA 1ELYA 2VQRA 1HDHA 5C66A 1AJCA 3UN2A 4UPKA 2W8DA 4LR7A 5L0KA 2GSOA 3T01A 4UPLA 2XRGA 5INHA 3BDHA 1EW2A 1N2LA 1ZEFA 4GTWA 4LREA 1Y7AA 5IJSA 2IFYA 1EW8A 4GTZA 3B5QA 1KH4A 2GA3A 4CXUA 4LRCA 3DYCA 4LR8A 4CXSA 1E1ZP 5GOVA 1EI6A 4LRFA 3SZZA 1URAA 3SZYA 1P49A 4ZGAA 5EGEA 2IUCA 3WBHA 3MK2A 5IJQA 2W5RA 4KJGA 1KH7A 4FDIA 1EJJA 3NKNA 1KHKA 4MIVA 1URBA 3M8YA 4QAXA 5KXAA 3BDFA 3TWZA 4CYRA 4KAYA 4KAVA 1KHNA 1ANIA 1ELZA 1HQAA 2W8SA 5L0EA 2W5QA 3NKOA 3TG0A 3T00A 5LIAA 4B56A 3NKQA 3TX0A 4KM4A 2GSNA 3E2DA 2RH6A 4LR9A 4UOPA 3Q3QA 4N7TA 1E3CP 4GTYA 3UO0A 3UN5A 3NKRA 4UPIA 1E2SP 1E33P 5EGHA 4MY4A 5LRMA 3ED4A 1AJDA 1KHLA 3NKPA 2ANHA 2QZUA 2W5VA 3BDGA 4LRBA 5HRTA 1HJKA 1ZEBA 3IGYB 4YR1A 4CXKA 2X98A 3NKMA 1ALJA 1AJBA 1ED9A 3M7VA
chains in the Genus database with same CATH superfamily
1ZEDA 3NVLA 1SHNA 4LRDA 2W5SA 3MK1A 1O99A 2GLQA 4ZG6A 2D1GA 4KJDA 1O98A 3M8WA 4MHXA 1Y6VA 2XR9A 1AJAA 5AJ9A 4ZG7A 3WAYA 5L0BA 1ELXA 1ALHA 5DLTA 1EQJA 1AUKA 1N2KA 4NWXA 3MK0A 2ZKTA 4CYSA 3UN3A 3M8ZA 3OT9A 5GRRA 5LRNA 3CMRA 4LQYA 1FSUA 4NWJA 4GTXA 5K4PA 5DLVA 1ALIA 4UORA 5LQQA 1B8JA 3T02A 5TJ3A 1KH9A 4ZG9A 2G9YA 3DPCA 1ALKA 2W5WA 4TN0A 4UOOA 3WAWA 3KD8A 3LXQA 1K7HA 1KHJA 2IUCB 4UPHA 4LR2A 3UNYA 3WAVA 1ED8A 2GSUA 1KH5A 2W5XA 3A52A 4LRAA 5DLWA 1ANJA 3IDDA 3IGZB 1EW9A 4FDJA 3WAXA 2W5TA 3BDGB 1SHQA 1ELYA 2VQRA 1HDHA 5C66A 1AJCA 3UN2A 4UPKA 2W8DA 4LR7A 5L0KA 2GSOA 3T01A 4UPLA 2XRGA 5INHA 3BDHA 1EW2A 1N2LA 1ZEFA 4GTWA 4LREA 1Y7AA 5IJSA 2IFYA 1EW8A 4GTZA 3B5QA 1KH4A 2GA3A 4CXUA 4LRCA 3DYCA 4LR8A 4CXSA 1E1ZP 5GOVA 1EI6A 4LRFA 3SZZA 1URAA 3SZYA 1P49A 4ZGAA 5EGEA 2IUCA 3WBHA 3MK2A 5IJQA 2W5RA 4KJGA 1KH7A 4FDIA 1EJJA 3NKNA 1KHKA 4MIVA 1URBA 3M8YA 4QAXA 5KXAA 3BDFA 3TWZA 4CYRA 4KAYA 4KAVA 1KHNA 1ANIA 1ELZA 1HQAA 2W8SA 5L0EA 2W5QA 3NKOA 3TG0A 3T00A 5LIAA 4B56A 3NKQA 3TX0A 4KM4A 2GSNA 3E2DA 2RH6A 4LR9A 4UOPA 3Q3QA 4N7TA 1E3CP 4GTYA 3UO0A 3UN5A 3NKRA 4UPIA 1E2SP 1E33P 5EGHA 4MY4A 5LRMA 3ED4A 1AJDA 1KHLA 3NKPA 2ANHA 2QZUA 2W5VA 3BDGA 4LRBA 5HRTA 1HJKA 1ZEBA 3IGYB 4YR1A 4CXKA 2X98A 3NKMA 1ALJA 1AJBA 1ED9A 3M7VA
chains in the Genus database with same CATH topology
1ZEDA 3NVLA 1SHNA 4LRDA 2W5SA 3MK1A 1O99A 2GLQA 4ZG6A 2D1GA 4KJDA 1O98A 3M8WA 4MHXA 1Y6VA 2XR9A 1AJAA 5AJ9A 4ZG7A 3WAYA 5L0BA 1ELXA 1ALHA 5DLTA 1EQJA 1AUKA 1N2KA 4NWXA 3MK0A 2ZKTA 4CYSA 3UN3A 3M8ZA 3OT9A 5GRRA 5LRNA 3CMRA 4LQYA 1FSUA 4NWJA 4GTXA 5K4PA 5DLVA 1ALIA 4UORA 5LQQA 1B8JA 3T02A 5TJ3A 1KH9A 4ZG9A 2G9YA 3DPCA 1ALKA 2W5WA 4TN0A 4UOOA 3WAWA 3KD8A 3LXQA 1K7HA 1KHJA 2IUCB 4UPHA 4LR2A 3UNYA 3WAVA 1ED8A 2GSUA 1KH5A 2W5XA 3A52A 4LRAA 5DLWA 1ANJA 3IDDA 3IGZB 1EW9A 4FDJA 3WAXA 2W5TA 3BDGB 1SHQA 1ELYA 2VQRA 1HDHA 5C66A 1AJCA 3UN2A 4UPKA 2W8DA 4LR7A 5L0KA 2GSOA 3T01A 4UPLA 2XRGA 5INHA 3BDHA 1EW2A 1N2LA 1ZEFA 4GTWA 4LREA 1Y7AA 5IJSA 2IFYA 1EW8A 4GTZA 3B5QA 1KH4A 2GA3A 4CXUA 4LRCA 3DYCA 4LR8A 4CXSA 1E1ZP 5GOVA 1EI6A 4LRFA 3SZZA 1URAA 3SZYA 1P49A 4ZGAA 5EGEA 2IUCA 3WBHA 3MK2A 5IJQA 2W5RA 4KJGA 1KH7A 4FDIA 1EJJA 3NKNA 1KHKA 4MIVA 1URBA 3M8YA 4QAXA 5KXAA 3BDFA 3TWZA 4CYRA 4KAYA 4KAVA 1KHNA 1ANIA 1ELZA 1HQAA 2W8SA 5L0EA 2W5QA 3NKOA 3TG0A 3T00A 5LIAA 4B56A 3NKQA 3TX0A 4KM4A 2GSNA 3E2DA 2RH6A 4LR9A 4UOPA 3Q3QA 4N7TA 1E3CP 4GTYA 3UO0A 3UN5A 3NKRA 4UPIA 1E2SP 1E33P 5EGHA 4MY4A 5LRMA 3ED4A 1AJDA 1KHLA 3NKPA 2ANHA 2QZUA 2W5VA 3BDGA 4LRBA 5HRTA 1HJKA 1ZEBA 3IGYB 4YR1A 4CXKA 2X98A 3NKMA 1ALJA 1AJBA 1ED9A 3M7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZED A;  3NVL A;  1SHN A;  4LRD A;  2W5S A;  3MK1 A;  1O99 A;  2GLQ A;  4ZG6 A;  2D1G A;  4KJD A;  1O98 A;  3M8W A;  4MHX A;  1Y6V A;  2XR9 A;  1AJA A;  5AJ9 A;  4ZG7 A;  3WAY A;  5L0B A;  1ELX A;  1ALH A;  5DLT A;  1EQJ A;  1AUK A;  1N2K A;  4NWX A;  3MK0 A;  2ZKT A;  4CYS A;  3UN3 A;  3M8Z A;  3OT9 A;  5GRR A;  5LRN A;  3CMR A;  4LQY A;  1FSU A;  4NWJ A;  4GTX A;  5K4P A;  5DLV A;  1ALI A;  4UOR A;  5LQQ A;  1B8J A;  3T02 A;  5TJ3 A;  1KH9 A;  4ZG9 A;  2G9Y A;  3DPC A;  1ALK A;  2W5W A;  4TN0 A;  4UOO A;  3WAW A;  3KD8 A;  3LXQ A;  1K7H A;  1KHJ A;  2IUC B;  4UPH A;  4LR2 A;  3UNY A;  3WAV A;  1ED8 A;  2GSU A;  1KH5 A;  2W5X A;  3A52 A;  4LRA A;  5DLW A;  1ANJ A;  3IDD A;  3IGZ B;  1EW9 A;  4FDJ A;  3WAX A;  2W5T A;  3BDG B;  1SHQ A;  1ELY A;  2VQR A;  1HDH A;  5C66 A;  1AJC A;  3UN2 A;  4UPK A;  2W8D A;  4LR7 A;  5L0K A;  2GSO A;  3T01 A;  4UPL A;  2XRG A;  5INH A;  3BDH A;  1EW2 A;  1N2L A;  1ZEF A;  4GTW A;  4LRE A;  1Y7A A;  5IJS A;  2IFY A;  1EW8 A;  4GTZ A;  3B5Q A;  1KH4 A;  2GA3 A;  4CXU A;  4LRC A;  3DYC A;  4LR8 A;  4CXS A;  1E1Z P;  5GOV A;  1EI6 A;  4LRF A;  3SZZ A;  1URA A;  3SZY A;  1P49 A;  4ZGA A;  5EGE A;  2IUC A;  3WBH A;  3MK2 A;  5IJQ A;  2W5R A;  4KJG A;  1KH7 A;  4FDI A;  1EJJ A;  3NKN A;  1KHK A;  4MIV A;  1URB A;  3M8Y A;  4QAX A;  5KXA A;  3BDF A;  3TWZ A;  4CYR A;  4KAY A;  4KAV A;  1KHN A;  1ANI A;  1ELZ A;  1HQA A;  2W8S A;  5L0E A;  2W5Q A;  3NKO A;  3TG0 A;  3T00 A;  5LIA A;  4B56 A;  3NKQ A;  3TX0 A;  4KM4 A;  2GSN A;  3E2D A;  2RH6 A;  4LR9 A;  4UOP A;  3Q3Q A;  4N7T A;  1E3C P;  4GTY A;  3UO0 A;  3UN5 A;  3NKR A;  4UPI A;  1E2S P;  1E33 P;  5EGH A;  4MY4 A;  5LRM A;  3ED4 A;  1AJD A;  1KHL A;  3NKP A;  2ANH A;  2QZU A;  2W5V A;  3BDG A;  4LRB A;  5HRT A;  1HJK A;  1ZEB A;  3IGY B;  4YR1 A;  4CXK A;  2X98 A;  3NKM A;  1ALJ A;  1AJB A;  1ED9 A;  3M7V A; 
#chains in the Genus database with same CATH topology
 1ZED A;  3NVL A;  1SHN A;  4LRD A;  2W5S A;  3MK1 A;  1O99 A;  2GLQ A;  4ZG6 A;  2D1G A;  4KJD A;  1O98 A;  3M8W A;  4MHX A;  1Y6V A;  2XR9 A;  1AJA A;  5AJ9 A;  4ZG7 A;  3WAY A;  5L0B A;  1ELX A;  1ALH A;  5DLT A;  1EQJ A;  1AUK A;  1N2K A;  4NWX A;  3MK0 A;  2ZKT A;  4CYS A;  3UN3 A;  3M8Z A;  3OT9 A;  5GRR A;  5LRN A;  3CMR A;  4LQY A;  1FSU A;  4NWJ A;  4GTX A;  5K4P A;  5DLV A;  1ALI A;  4UOR A;  5LQQ A;  1B8J A;  3T02 A;  5TJ3 A;  1KH9 A;  4ZG9 A;  2G9Y A;  3DPC A;  1ALK A;  2W5W A;  4TN0 A;  4UOO A;  3WAW A;  3KD8 A;  3LXQ A;  1K7H A;  1KHJ A;  2IUC B;  4UPH A;  4LR2 A;  3UNY A;  3WAV A;  1ED8 A;  2GSU A;  1KH5 A;  2W5X A;  3A52 A;  4LRA A;  5DLW A;  1ANJ A;  3IDD A;  3IGZ B;  1EW9 A;  4FDJ A;  3WAX A;  2W5T A;  3BDG B;  1SHQ A;  1ELY A;  2VQR A;  1HDH A;  5C66 A;  1AJC A;  3UN2 A;  4UPK A;  2W8D A;  4LR7 A;  5L0K A;  2GSO A;  3T01 A;  4UPL A;  2XRG A;  5INH A;  3BDH A;  1EW2 A;  1N2L A;  1ZEF A;  4GTW A;  4LRE A;  1Y7A A;  5IJS A;  2IFY A;  1EW8 A;  4GTZ A;  3B5Q A;  1KH4 A;  2GA3 A;  4CXU A;  4LRC A;  3DYC A;  4LR8 A;  4CXS A;  1E1Z P;  5GOV A;  1EI6 A;  4LRF A;  3SZZ A;  1URA A;  3SZY A;  1P49 A;  4ZGA A;  5EGE A;  2IUC A;  3WBH A;  3MK2 A;  5IJQ A;  2W5R A;  4KJG A;  1KH7 A;  4FDI A;  1EJJ A;  3NKN A;  1KHK A;  4MIV A;  1URB A;  3M8Y A;  4QAX A;  5KXA A;  3BDF A;  3TWZ A;  4CYR A;  4KAY A;  4KAV A;  1KHN A;  1ANI A;  1ELZ A;  1HQA A;  2W8S A;  5L0E A;  2W5Q A;  3NKO A;  3TG0 A;  3T00 A;  5LIA A;  4B56 A;  3NKQ A;  3TX0 A;  4KM4 A;  2GSN A;  3E2D A;  2RH6 A;  4LR9 A;  4UOP A;  3Q3Q A;  4N7T A;  1E3C P;  4GTY A;  3UO0 A;  3UN5 A;  3NKR A;  4UPI A;  1E2S P;  1E33 P;  5EGH A;  4MY4 A;  5LRM A;  3ED4 A;  1AJD A;  1KHL A;  3NKP A;  2ANH A;  2QZU A;  2W5V A;  3BDG A;  4LRB A;  5HRT A;  1HJK A;  1ZEB A;  3IGY B;  4YR1 A;  4CXK A;  2X98 A;  3NKM A;  1ALJ A;  1AJB A;  1ED9 A;  3M7V A; 
#chains in the Genus database with same CATH homology
 1ZED A;  3NVL A;  1SHN A;  4LRD A;  2W5S A;  3MK1 A;  1O99 A;  2GLQ A;  4ZG6 A;  2D1G A;  4KJD A;  1O98 A;  3M8W A;  4MHX A;  1Y6V A;  2XR9 A;  1AJA A;  5AJ9 A;  4ZG7 A;  3WAY A;  5L0B A;  1ELX A;  1ALH A;  5DLT A;  1EQJ A;  1AUK A;  1N2K A;  4NWX A;  3MK0 A;  2ZKT A;  4CYS A;  3UN3 A;  3M8Z A;  3OT9 A;  5GRR A;  5LRN A;  3CMR A;  4LQY A;  1FSU A;  4NWJ A;  4GTX A;  5K4P A;  5DLV A;  1ALI A;  4UOR A;  5LQQ A;  1B8J A;  3T02 A;  5TJ3 A;  1KH9 A;  4ZG9 A;  2G9Y A;  3DPC A;  1ALK A;  2W5W A;  4TN0 A;  4UOO A;  3WAW A;  3KD8 A;  3LXQ A;  1K7H A;  1KHJ A;  2IUC B;  4UPH A;  4LR2 A;  3UNY A;  3WAV A;  1ED8 A;  2GSU A;  1KH5 A;  2W5X A;  3A52 A;  4LRA A;  5DLW A;  1ANJ A;  3IDD A;  3IGZ B;  1EW9 A;  4FDJ A;  3WAX A;  2W5T A;  3BDG B;  1SHQ A;  1ELY A;  2VQR A;  1HDH A;  5C66 A;  1AJC A;  3UN2 A;  4UPK A;  2W8D A;  4LR7 A;  5L0K A;  2GSO A;  3T01 A;  4UPL A;  2XRG A;  5INH A;  3BDH A;  1EW2 A;  1N2L A;  1ZEF A;  4GTW A;  4LRE A;  1Y7A A;  5IJS A;  2IFY A;  1EW8 A;  4GTZ A;  3B5Q A;  1KH4 A;  2GA3 A;  4CXU A;  4LRC A;  3DYC A;  4LR8 A;  4CXS A;  1E1Z P;  5GOV A;  1EI6 A;  4LRF A;  3SZZ A;  1URA A;  3SZY A;  1P49 A;  4ZGA A;  5EGE A;  2IUC A;  3WBH A;  3MK2 A;  5IJQ A;  2W5R A;  4KJG A;  1KH7 A;  4FDI A;  1EJJ A;  3NKN A;  1KHK A;  4MIV A;  1URB A;  3M8Y A;  4QAX A;  5KXA A;  3BDF A;  3TWZ A;  4CYR A;  4KAY A;  4KAV A;  1KHN A;  1ANI A;  1ELZ A;  1HQA A;  2W8S A;  5L0E A;  2W5Q A;  3NKO A;  3TG0 A;  3T00 A;  5LIA A;  4B56 A;  3NKQ A;  3TX0 A;  4KM4 A;  2GSN A;  3E2D A;  2RH6 A;  4LR9 A;  4UOP A;  3Q3Q A;  4N7T A;  1E3C P;  4GTY A;  3UO0 A;  3UN5 A;  3NKR A;  4UPI A;  1E2S P;  1E33 P;  5EGH A;  4MY4 A;  5LRM A;  3ED4 A;  1AJD A;  1KHL A;  3NKP A;  2ANH A;  2QZU A;  2W5V A;  3BDG A;  4LRB A;  5HRT A;  1HJK A;  1ZEB A;  3IGY B;  4YR1 A;  4CXK A;  2X98 A;  3NKM A;  1ALJ A;  1AJB A;  1ED9 A;  3M7V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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