2W5RA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKASDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 168
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5rA02
1E2SP 3BDGB 4N7TA 3SZYA 4FDJA 3BDHA 3UO0A 1ELXA 1EW8A 3UNYA 5DLTA 3DYCA 1N2KA 3T00A 3MK2A 3NKOA 5AJ9A 4GTXA 4KM4A 1ZEBA 1K7HA 4LR8A 1URBA 2GSUA 4ZG9A 2X98A 3NKRA 5LRNA 4CXKA 3MK0A 2G9YA 4LR9A 3Q3QA 4MIVA 3T02A 4LRFA 4GTZA 1KHNA 2IFYA 2W5WA 3NKQA 2W5RA 1AJAA 2XR9A 1E33P 4UPLA 2RH6A 4LQYA 3NKMA 4CXSA 4CYSA 3WAYA 4QAXA 1Y7AA 1ANIA 2GA3A 3M8YA 4FDIA 2W5XA 1HJKA 1AJBA 1ALIA 3M7VA 5L0KA 4LR7A 2W5TA 3ED4A 1ZEDA 3NKPA 5LRMA 3M8WA 3T01A 1EI6A 1FSUA 2ANHA 1ED9A 1ANJA 1ALKA 4NWXA 4LRDA 4UOOA 1ELZA 1ALHA 1KH5A 4TN0A 1KHJA 5IJQA 3OT9A 4GTYA 5C66A 1SHQA 3WAWA 1P49A 1KH7A 4UORA 2GLQA 1URAA 1HQAA 2VQRA 5GOVA 4YR1A 3WBHA 5LQQA 5IJSA 1AUKA 3UN2A 3WAXA 4KJDA 4CYRA 1O98A 4KAVA 5K4PA 4ZG6A 5DLWA 3MK1A 1ZEFA 3IGZB 1E1ZP 1B8JA 4GTWA 1N2LA 5KXAA 1O99A 1SHNA 3E2DA 1KHKA 1HDHA 3NVLA 3TX0A 2W5SA 4ZGAA 3NKNA 4MY4A 5EGEA 4UPHA 4LREA 2W5VA 3DPCA 5GRRA 1EQJA 4UOPA 1AJDA 4KAYA 4LRBA 3M8ZA 1KHLA 3BDFA 5INHA 4ZG7A 2ZKTA 1E3CP 3CMRA 4NWJA 2W8SA 2D1GA 5LIAA 5EGHA 4LRAA 3UN3A 3TWZA 4LRCA 4MHXA 1EW2A 1KH9A 1ED8A 1AJCA 1ALJA 5L0EA 2GSNA 2XRGA 4KJGA 2IUCA 4CXUA 3TG0A 2IUCB 4LR2A 1EJJA 4UPKA 2QZUA 3WAVA 5L0BA 3B5QA 4B56A 3IDDA 3SZZA 1KH4A 2W5QA 1Y6VA 2W8DA 3KD8A 1ELYA 3A52A 3IGYB 5TJ3A 5DLVA 3LXQA 5HRTA 1EW9A 3UN5A 4UPIA 3BDGA 2GSOA
chains in the Genus database with same CATH superfamily
1E2SP 3BDGB 4N7TA 3SZYA 4FDJA 3BDHA 3UO0A 1ELXA 1EW8A 3UNYA 5DLTA 3DYCA 1N2KA 3T00A 3MK2A 3NKOA 5AJ9A 4GTXA 4KM4A 1ZEBA 1K7HA 4LR8A 1URBA 2GSUA 4ZG9A 2X98A 3NKRA 5LRNA 4CXKA 3MK0A 2G9YA 4LR9A 3Q3QA 4MIVA 3T02A 4LRFA 4GTZA 1KHNA 2IFYA 2W5WA 3NKQA 2W5RA 1AJAA 2XR9A 1E33P 4UPLA 2RH6A 4LQYA 3NKMA 4CXSA 4CYSA 3WAYA 4QAXA 1Y7AA 1ANIA 2GA3A 3M8YA 4FDIA 2W5XA 1HJKA 1AJBA 1ALIA 3M7VA 5L0KA 4LR7A 2W5TA 3ED4A 1ZEDA 3NKPA 5LRMA 3M8WA 3T01A 1EI6A 1FSUA 2ANHA 1ED9A 1ANJA 1ALKA 4NWXA 4LRDA 4UOOA 1ELZA 1ALHA 1KH5A 4TN0A 1KHJA 5IJQA 3OT9A 4GTYA 5C66A 1SHQA 3WAWA 1P49A 1KH7A 4UORA 2GLQA 1URAA 1HQAA 2VQRA 5GOVA 4YR1A 3WBHA 5LQQA 5IJSA 1AUKA 3UN2A 3WAXA 4KJDA 4CYRA 1O98A 4KAVA 5K4PA 4ZG6A 5DLWA 3MK1A 1ZEFA 3IGZB 1E1ZP 1B8JA 4GTWA 1N2LA 5KXAA 1O99A 1SHNA 3E2DA 1KHKA 1HDHA 3NVLA 3TX0A 2W5SA 4ZGAA 3NKNA 4MY4A 5EGEA 4UPHA 4LREA 2W5VA 3DPCA 5GRRA 1EQJA 4UOPA 1AJDA 4KAYA 4LRBA 3M8ZA 1KHLA 3BDFA 5INHA 4ZG7A 2ZKTA 1E3CP 3CMRA 4NWJA 2W8SA 2D1GA 5LIAA 5EGHA 4LRAA 3UN3A 3TWZA 4LRCA 4MHXA 1EW2A 1KH9A 1ED8A 1AJCA 1ALJA 5L0EA 2GSNA 2XRGA 4KJGA 2IUCA 4CXUA 3TG0A 2IUCB 4LR2A 1EJJA 4UPKA 2QZUA 3WAVA 5L0BA 3B5QA 4B56A 3IDDA 3SZZA 1KH4A 2W5QA 1Y6VA 2W8DA 3KD8A 1ELYA 3A52A 3IGYB 5TJ3A 5DLVA 3LXQA 5HRTA 1EW9A 3UN5A 4UPIA 3BDGA 2GSOA
chains in the Genus database with same CATH topology
1E2SP 3BDGB 4N7TA 3SZYA 4FDJA 3BDHA 3UO0A 1ELXA 1EW8A 3UNYA 5DLTA 3DYCA 1N2KA 3T00A 3MK2A 3NKOA 5AJ9A 4GTXA 4KM4A 1ZEBA 1K7HA 4LR8A 1URBA 2GSUA 4ZG9A 2X98A 3NKRA 5LRNA 4CXKA 3MK0A 2G9YA 4LR9A 3Q3QA 4MIVA 3T02A 4LRFA 4GTZA 1KHNA 2IFYA 2W5WA 3NKQA 2W5RA 1AJAA 2XR9A 1E33P 4UPLA 2RH6A 4LQYA 3NKMA 4CXSA 4CYSA 3WAYA 4QAXA 1Y7AA 1ANIA 2GA3A 3M8YA 4FDIA 2W5XA 1HJKA 1AJBA 1ALIA 3M7VA 5L0KA 4LR7A 2W5TA 3ED4A 1ZEDA 3NKPA 5LRMA 3M8WA 3T01A 1EI6A 1FSUA 2ANHA 1ED9A 1ANJA 1ALKA 4NWXA 4LRDA 4UOOA 1ELZA 1ALHA 1KH5A 4TN0A 1KHJA 5IJQA 3OT9A 4GTYA 5C66A 1SHQA 3WAWA 1P49A 1KH7A 4UORA 2GLQA 1URAA 1HQAA 2VQRA 5GOVA 4YR1A 3WBHA 5LQQA 5IJSA 1AUKA 3UN2A 3WAXA 4KJDA 4CYRA 1O98A 4KAVA 5K4PA 4ZG6A 5DLWA 3MK1A 1ZEFA 3IGZB 1E1ZP 1B8JA 4GTWA 1N2LA 5KXAA 1O99A 1SHNA 3E2DA 1KHKA 1HDHA 3NVLA 3TX0A 2W5SA 4ZGAA 3NKNA 4MY4A 5EGEA 4UPHA 4LREA 2W5VA 3DPCA 5GRRA 1EQJA 4UOPA 1AJDA 4KAYA 4LRBA 3M8ZA 1KHLA 3BDFA 5INHA 4ZG7A 2ZKTA 1E3CP 3CMRA 4NWJA 2W8SA 2D1GA 5LIAA 5EGHA 4LRAA 3UN3A 3TWZA 4LRCA 4MHXA 1EW2A 1KH9A 1ED8A 1AJCA 1ALJA 5L0EA 2GSNA 2XRGA 4KJGA 2IUCA 4CXUA 3TG0A 2IUCB 4LR2A 1EJJA 4UPKA 2QZUA 3WAVA 5L0BA 3B5QA 4B56A 3IDDA 3SZZA 1KH4A 2W5QA 1Y6VA 2W8DA 3KD8A 1ELYA 3A52A 3IGYB 5TJ3A 5DLVA 3LXQA 5HRTA 1EW9A 3UN5A 4UPIA 3BDGA 2GSOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E2S P;  3BDG B;  4N7T A;  3SZY A;  4FDJ A;  3BDH A;  3UO0 A;  1ELX A;  1EW8 A;  3UNY A;  5DLT A;  3DYC A;  1N2K A;  3T00 A;  3MK2 A;  3NKO A;  5AJ9 A;  4GTX A;  4KM4 A;  1ZEB A;  1K7H A;  4LR8 A;  1URB A;  2GSU A;  4ZG9 A;  2X98 A;  3NKR A;  5LRN A;  4CXK A;  3MK0 A;  2G9Y A;  4LR9 A;  3Q3Q A;  4MIV A;  3T02 A;  4LRF A;  4GTZ A;  1KHN A;  2IFY A;  2W5W A;  3NKQ A;  2W5R A;  1AJA A;  2XR9 A;  1E33 P;  4UPL A;  2RH6 A;  4LQY A;  3NKM A;  4CXS A;  4CYS A;  3WAY A;  4QAX A;  1Y7A A;  1ANI A;  2GA3 A;  3M8Y A;  4FDI A;  2W5X A;  1HJK A;  1AJB A;  1ALI A;  3M7V A;  5L0K A;  4LR7 A;  2W5T A;  3ED4 A;  1ZED A;  3NKP A;  5LRM A;  3M8W A;  3T01 A;  1EI6 A;  1FSU A;  2ANH A;  1ED9 A;  1ANJ A;  1ALK A;  4NWX A;  4LRD A;  4UOO A;  1ELZ A;  1ALH A;  1KH5 A;  4TN0 A;  1KHJ A;  5IJQ A;  3OT9 A;  4GTY A;  5C66 A;  1SHQ A;  3WAW A;  1P49 A;  1KH7 A;  4UOR A;  2GLQ A;  1URA A;  1HQA A;  2VQR A;  5GOV A;  4YR1 A;  3WBH A;  5LQQ A;  5IJS A;  1AUK A;  3UN2 A;  3WAX A;  4KJD A;  4CYR A;  1O98 A;  4KAV A;  5K4P A;  4ZG6 A;  5DLW A;  3MK1 A;  1ZEF A;  3IGZ B;  1E1Z P;  1B8J A;  4GTW A;  1N2L A;  5KXA A;  1O99 A;  1SHN A;  3E2D A;  1KHK A;  1HDH A;  3NVL A;  3TX0 A;  2W5S A;  4ZGA A;  3NKN A;  4MY4 A;  5EGE A;  4UPH A;  4LRE A;  2W5V A;  3DPC A;  5GRR A;  1EQJ A;  4UOP A;  1AJD A;  4KAY A;  4LRB A;  3M8Z A;  1KHL A;  3BDF A;  5INH A;  4ZG7 A;  2ZKT A;  1E3C P;  3CMR A;  4NWJ A;  2W8S A;  2D1G A;  5LIA A;  5EGH A;  4LRA A;  3UN3 A;  3TWZ A;  4LRC A;  4MHX A;  1EW2 A;  1KH9 A;  1ED8 A;  1AJC A;  1ALJ A;  5L0E A;  2GSN A;  2XRG A;  4KJG A;  2IUC A;  4CXU A;  3TG0 A;  2IUC B;  4LR2 A;  1EJJ A;  4UPK A;  2QZU A;  3WAV A;  5L0B A;  3B5Q A;  4B56 A;  3IDD A;  3SZZ A;  1KH4 A;  2W5Q A;  1Y6V A;  2W8D A;  3KD8 A;  1ELY A;  3A52 A;  3IGY B;  5TJ3 A;  5DLV A;  3LXQ A;  5HRT A;  1EW9 A;  3UN5 A;  4UPI A;  3BDG A;  2GSO A; 
#chains in the Genus database with same CATH topology
 1E2S P;  3BDG B;  4N7T A;  3SZY A;  4FDJ A;  3BDH A;  3UO0 A;  1ELX A;  1EW8 A;  3UNY A;  5DLT A;  3DYC A;  1N2K A;  3T00 A;  3MK2 A;  3NKO A;  5AJ9 A;  4GTX A;  4KM4 A;  1ZEB A;  1K7H A;  4LR8 A;  1URB A;  2GSU A;  4ZG9 A;  2X98 A;  3NKR A;  5LRN A;  4CXK A;  3MK0 A;  2G9Y A;  4LR9 A;  3Q3Q A;  4MIV A;  3T02 A;  4LRF A;  4GTZ A;  1KHN A;  2IFY A;  2W5W A;  3NKQ A;  2W5R A;  1AJA A;  2XR9 A;  1E33 P;  4UPL A;  2RH6 A;  4LQY A;  3NKM A;  4CXS A;  4CYS A;  3WAY A;  4QAX A;  1Y7A A;  1ANI A;  2GA3 A;  3M8Y A;  4FDI A;  2W5X A;  1HJK A;  1AJB A;  1ALI A;  3M7V A;  5L0K A;  4LR7 A;  2W5T A;  3ED4 A;  1ZED A;  3NKP A;  5LRM A;  3M8W A;  3T01 A;  1EI6 A;  1FSU A;  2ANH A;  1ED9 A;  1ANJ A;  1ALK A;  4NWX A;  4LRD A;  4UOO A;  1ELZ A;  1ALH A;  1KH5 A;  4TN0 A;  1KHJ A;  5IJQ A;  3OT9 A;  4GTY A;  5C66 A;  1SHQ A;  3WAW A;  1P49 A;  1KH7 A;  4UOR A;  2GLQ A;  1URA A;  1HQA A;  2VQR A;  5GOV A;  4YR1 A;  3WBH A;  5LQQ A;  5IJS A;  1AUK A;  3UN2 A;  3WAX A;  4KJD A;  4CYR A;  1O98 A;  4KAV A;  5K4P A;  4ZG6 A;  5DLW A;  3MK1 A;  1ZEF A;  3IGZ B;  1E1Z P;  1B8J A;  4GTW A;  1N2L A;  5KXA A;  1O99 A;  1SHN A;  3E2D A;  1KHK A;  1HDH A;  3NVL A;  3TX0 A;  2W5S A;  4ZGA A;  3NKN A;  4MY4 A;  5EGE A;  4UPH A;  4LRE A;  2W5V A;  3DPC A;  5GRR A;  1EQJ A;  4UOP A;  1AJD A;  4KAY A;  4LRB A;  3M8Z A;  1KHL A;  3BDF A;  5INH A;  4ZG7 A;  2ZKT A;  1E3C P;  3CMR A;  4NWJ A;  2W8S A;  2D1G A;  5LIA A;  5EGH A;  4LRA A;  3UN3 A;  3TWZ A;  4LRC A;  4MHX A;  1EW2 A;  1KH9 A;  1ED8 A;  1AJC A;  1ALJ A;  5L0E A;  2GSN A;  2XRG A;  4KJG A;  2IUC A;  4CXU A;  3TG0 A;  2IUC B;  4LR2 A;  1EJJ A;  4UPK A;  2QZU A;  3WAV A;  5L0B A;  3B5Q A;  4B56 A;  3IDD A;  3SZZ A;  1KH4 A;  2W5Q A;  1Y6V A;  2W8D A;  3KD8 A;  1ELY A;  3A52 A;  3IGY B;  5TJ3 A;  5DLV A;  3LXQ A;  5HRT A;  1EW9 A;  3UN5 A;  4UPI A;  3BDG A;  2GSO A; 
#chains in the Genus database with same CATH homology
 1E2S P;  3BDG B;  4N7T A;  3SZY A;  4FDJ A;  3BDH A;  3UO0 A;  1ELX A;  1EW8 A;  3UNY A;  5DLT A;  3DYC A;  1N2K A;  3T00 A;  3MK2 A;  3NKO A;  5AJ9 A;  4GTX A;  4KM4 A;  1ZEB A;  1K7H A;  4LR8 A;  1URB A;  2GSU A;  4ZG9 A;  2X98 A;  3NKR A;  5LRN A;  4CXK A;  3MK0 A;  2G9Y A;  4LR9 A;  3Q3Q A;  4MIV A;  3T02 A;  4LRF A;  4GTZ A;  1KHN A;  2IFY A;  2W5W A;  3NKQ A;  2W5R A;  1AJA A;  2XR9 A;  1E33 P;  4UPL A;  2RH6 A;  4LQY A;  3NKM A;  4CXS A;  4CYS A;  3WAY A;  4QAX A;  1Y7A A;  1ANI A;  2GA3 A;  3M8Y A;  4FDI A;  2W5X A;  1HJK A;  1AJB A;  1ALI A;  3M7V A;  5L0K A;  4LR7 A;  2W5T A;  3ED4 A;  1ZED A;  3NKP A;  5LRM A;  3M8W A;  3T01 A;  1EI6 A;  1FSU A;  2ANH A;  1ED9 A;  1ANJ A;  1ALK A;  4NWX A;  4LRD A;  4UOO A;  1ELZ A;  1ALH A;  1KH5 A;  4TN0 A;  1KHJ A;  5IJQ A;  3OT9 A;  4GTY A;  5C66 A;  1SHQ A;  3WAW A;  1P49 A;  1KH7 A;  4UOR A;  2GLQ A;  1URA A;  1HQA A;  2VQR A;  5GOV A;  4YR1 A;  3WBH A;  5LQQ A;  5IJS A;  1AUK A;  3UN2 A;  3WAX A;  4KJD A;  4CYR A;  1O98 A;  4KAV A;  5K4P A;  4ZG6 A;  5DLW A;  3MK1 A;  1ZEF A;  3IGZ B;  1E1Z P;  1B8J A;  4GTW A;  1N2L A;  5KXA A;  1O99 A;  1SHN A;  3E2D A;  1KHK A;  1HDH A;  3NVL A;  3TX0 A;  2W5S A;  4ZGA A;  3NKN A;  4MY4 A;  5EGE A;  4UPH A;  4LRE A;  2W5V A;  3DPC A;  5GRR A;  1EQJ A;  4UOP A;  1AJD A;  4KAY A;  4LRB A;  3M8Z A;  1KHL A;  3BDF A;  5INH A;  4ZG7 A;  2ZKT A;  1E3C P;  3CMR A;  4NWJ A;  2W8S A;  2D1G A;  5LIA A;  5EGH A;  4LRA A;  3UN3 A;  3TWZ A;  4LRC A;  4MHX A;  1EW2 A;  1KH9 A;  1ED8 A;  1AJC A;  1ALJ A;  5L0E A;  2GSN A;  2XRG A;  4KJG A;  2IUC A;  4CXU A;  3TG0 A;  2IUC B;  4LR2 A;  1EJJ A;  4UPK A;  2QZU A;  3WAV A;  5L0B A;  3B5Q A;  4B56 A;  3IDD A;  3SZZ A;  1KH4 A;  2W5Q A;  1Y6V A;  2W8D A;  3KD8 A;  1ELY A;  3A52 A;  3IGY B;  5TJ3 A;  5DLV A;  3LXQ A;  5HRT A;  1EW9 A;  3UN5 A;  4UPI A;  3BDG A;  2GSO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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