2W5RA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
Knots found
sequence length
424
structure length
424
Chain Sequence
b'SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKASDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 168
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5rA02
4LR2A 4ZGAA 1ED8A 3WAYA 5L0EA 4KAVA 3NKQA 3WAVA 1ANJA 4GTXA 1AUKA 3E2DA 2IFYA 3UNYA 4CYSA 4CXKA 2W5RA 1E1ZP 1ED9A 1N2KA 5EGHA 4LR8A 1E3CP 3NKPA 2GSUA 5LIAA 2W5SA 3LXQA 1K7HA 3M8WA 3WAWA 4ZG6A 1N2LA 5GOVA 3BDGA 2GSOA 4LR7A 4FDJA 1SHQA 4N7TA 4LQYA 4UPKA 2RH6A 3A52A 3WAXA 4UPHA 3T02A 5DLWA 2XRGA 1ZEDA 1O99A 1O98A 4LREA 4CXUA 1AJDA 2IUCA 4KM4A 4MHXA 1ELXA 1KHKA 3B5QA 3ED4A 3NKNA 2X98A 1AJAA 3SZYA 3UO0A 5DLVA 4ZG7A 2W5TA 1HJKA 3M8ZA 4LRDA 1E33P 1ZEBA 1ANIA 5HRTA 1B8JA 2W5XA 4UORA 2W8DA 3TWZA 1EQJA 4B56A 4MY4A 1EW2A 5LRNA 1KH9A 3TG0A 3BDGB 2W5QA 4YR1A 1EI6A 1HDHA 2G9YA 3IGYB 1ELYA 1URAA 3M7VA 1URBA 5EGEA 1KH4A 2GA3A 1AJBA 2IUCB 5L0KA 4NWXA 3MK0A 1HQAA 5DLTA 5AJ9A 1KH5A 3OT9A 2W8SA 1FSUA 1EJJA 3UN5A 4UOOA 1AJCA 1ALIA 3IGZB 1EW8A 3Q3QA 1EW9A 3DYCA 4LRCA 3NKOA 3UN2A 5C66A 1ALJA 4GTYA 4LRFA 4KJGA 5TJ3A 2XR9A 4LRAA 3NVLA 4LRBA 5IJQA 1KHJA 3BDHA 3SZZA 5L0BA 4TN0A 3DPCA 4CYRA 4GTWA 3IDDA 2W5VA 1KHNA 2W5WA 3T00A 4NWJA 1SHNA 5INHA 3NKRA 1ALHA 2QZUA 3M8YA 4ZG9A 1KHLA 3MK1A 3UN3A 5KXAA 1ELZA 2D1GA 2ZKTA 4GTZA 5IJSA 5K4PA 2ANHA 4LR9A 4QAXA 1Y6VA 5GRRA 4KAYA 3NKMA 3WBHA 4MIVA 1ALKA 1E2SP 2GLQA 4UPLA 4UOPA 1KH7A 4UPIA 3T01A 3BDFA 2VQRA 5LQQA 3KD8A 1P49A 3MK2A 3CMRA 1Y7AA 2GSNA 5LRMA 4CXSA 3TX0A 4KJDA 4FDIA 1ZEFA
chains in the Genus database with same CATH superfamily
4LR2A 4ZGAA 1ED8A 3WAYA 5L0EA 4KAVA 3NKQA 3WAVA 1ANJA 4GTXA 1AUKA 3E2DA 2IFYA 3UNYA 4CYSA 4CXKA 2W5RA 1E1ZP 1ED9A 1N2KA 5EGHA 4LR8A 1E3CP 3NKPA 2GSUA 5LIAA 2W5SA 3LXQA 1K7HA 3M8WA 3WAWA 4ZG6A 1N2LA 5GOVA 3BDGA 2GSOA 4LR7A 4FDJA 1SHQA 4N7TA 4LQYA 4UPKA 2RH6A 3A52A 3WAXA 4UPHA 3T02A 5DLWA 2XRGA 1ZEDA 1O99A 1O98A 4LREA 4CXUA 1AJDA 2IUCA 4KM4A 4MHXA 1ELXA 1KHKA 3B5QA 3ED4A 3NKNA 2X98A 1AJAA 3SZYA 3UO0A 5DLVA 4ZG7A 2W5TA 1HJKA 3M8ZA 4LRDA 1E33P 1ZEBA 1ANIA 5HRTA 1B8JA 2W5XA 4UORA 2W8DA 3TWZA 1EQJA 4B56A 4MY4A 1EW2A 5LRNA 1KH9A 3TG0A 3BDGB 2W5QA 4YR1A 1EI6A 1HDHA 2G9YA 3IGYB 1ELYA 1URAA 3M7VA 1URBA 5EGEA 1KH4A 2GA3A 1AJBA 2IUCB 5L0KA 4NWXA 3MK0A 1HQAA 5DLTA 5AJ9A 1KH5A 3OT9A 2W8SA 1FSUA 1EJJA 3UN5A 4UOOA 1AJCA 1ALIA 3IGZB 1EW8A 3Q3QA 1EW9A 3DYCA 4LRCA 3NKOA 3UN2A 5C66A 1ALJA 4GTYA 4LRFA 4KJGA 5TJ3A 2XR9A 4LRAA 3NVLA 4LRBA 5IJQA 1KHJA 3BDHA 3SZZA 5L0BA 4TN0A 3DPCA 4CYRA 4GTWA 3IDDA 2W5VA 1KHNA 2W5WA 3T00A 4NWJA 1SHNA 5INHA 3NKRA 1ALHA 2QZUA 3M8YA 4ZG9A 1KHLA 3MK1A 3UN3A 5KXAA 1ELZA 2D1GA 2ZKTA 4GTZA 5IJSA 5K4PA 2ANHA 4LR9A 4QAXA 1Y6VA 5GRRA 4KAYA 3NKMA 3WBHA 4MIVA 1ALKA 1E2SP 2GLQA 4UPLA 4UOPA 1KH7A 4UPIA 3T01A 3BDFA 2VQRA 5LQQA 3KD8A 1P49A 3MK2A 3CMRA 1Y7AA 2GSNA 5LRMA 4CXSA 3TX0A 4KJDA 4FDIA 1ZEFA
chains in the Genus database with same CATH topology
4LR2A 4ZGAA 1ED8A 3WAYA 5L0EA 4KAVA 3NKQA 3WAVA 1ANJA 4GTXA 1AUKA 3E2DA 2IFYA 3UNYA 4CYSA 4CXKA 2W5RA 1E1ZP 1ED9A 1N2KA 5EGHA 4LR8A 1E3CP 3NKPA 2GSUA 5LIAA 2W5SA 3LXQA 1K7HA 3M8WA 3WAWA 4ZG6A 1N2LA 5GOVA 3BDGA 2GSOA 4LR7A 4FDJA 1SHQA 4N7TA 4LQYA 4UPKA 2RH6A 3A52A 3WAXA 4UPHA 3T02A 5DLWA 2XRGA 1ZEDA 1O99A 1O98A 4LREA 4CXUA 1AJDA 2IUCA 4KM4A 4MHXA 1ELXA 1KHKA 3B5QA 3ED4A 3NKNA 2X98A 1AJAA 3SZYA 3UO0A 5DLVA 4ZG7A 2W5TA 1HJKA 3M8ZA 4LRDA 1E33P 1ZEBA 1ANIA 5HRTA 1B8JA 2W5XA 4UORA 2W8DA 3TWZA 1EQJA 4B56A 4MY4A 1EW2A 5LRNA 1KH9A 3TG0A 3BDGB 2W5QA 4YR1A 1EI6A 1HDHA 2G9YA 3IGYB 1ELYA 1URAA 3M7VA 1URBA 5EGEA 1KH4A 2GA3A 1AJBA 2IUCB 5L0KA 4NWXA 3MK0A 1HQAA 5DLTA 5AJ9A 1KH5A 3OT9A 2W8SA 1FSUA 1EJJA 3UN5A 4UOOA 1AJCA 1ALIA 3IGZB 1EW8A 3Q3QA 1EW9A 3DYCA 4LRCA 3NKOA 3UN2A 5C66A 1ALJA 4GTYA 4LRFA 4KJGA 5TJ3A 2XR9A 4LRAA 3NVLA 4LRBA 5IJQA 1KHJA 3BDHA 3SZZA 5L0BA 4TN0A 3DPCA 4CYRA 4GTWA 3IDDA 2W5VA 1KHNA 2W5WA 3T00A 4NWJA 1SHNA 5INHA 3NKRA 1ALHA 2QZUA 3M8YA 4ZG9A 1KHLA 3MK1A 3UN3A 5KXAA 1ELZA 2D1GA 2ZKTA 4GTZA 5IJSA 5K4PA 2ANHA 4LR9A 4QAXA 1Y6VA 5GRRA 4KAYA 3NKMA 3WBHA 4MIVA 1ALKA 1E2SP 2GLQA 4UPLA 4UOPA 1KH7A 4UPIA 3T01A 3BDFA 2VQRA 5LQQA 3KD8A 1P49A 3MK2A 3CMRA 1Y7AA 2GSNA 5LRMA 4CXSA 3TX0A 4KJDA 4FDIA 1ZEFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LR2 A;  4ZGA A;  1ED8 A;  3WAY A;  5L0E A;  4KAV A;  3NKQ A;  3WAV A;  1ANJ A;  4GTX A;  1AUK A;  3E2D A;  2IFY A;  3UNY A;  4CYS A;  4CXK A;  2W5R A;  1E1Z P;  1ED9 A;  1N2K A;  5EGH A;  4LR8 A;  1E3C P;  3NKP A;  2GSU A;  5LIA A;  2W5S A;  3LXQ A;  1K7H A;  3M8W A;  3WAW A;  4ZG6 A;  1N2L A;  5GOV A;  3BDG A;  2GSO A;  4LR7 A;  4FDJ A;  1SHQ A;  4N7T A;  4LQY A;  4UPK A;  2RH6 A;  3A52 A;  3WAX A;  4UPH A;  3T02 A;  5DLW A;  2XRG A;  1ZED A;  1O99 A;  1O98 A;  4LRE A;  4CXU A;  1AJD A;  2IUC A;  4KM4 A;  4MHX A;  1ELX A;  1KHK A;  3B5Q A;  3ED4 A;  3NKN A;  2X98 A;  1AJA A;  3SZY A;  3UO0 A;  5DLV A;  4ZG7 A;  2W5T A;  1HJK A;  3M8Z A;  4LRD A;  1E33 P;  1ZEB A;  1ANI A;  5HRT A;  1B8J A;  2W5X A;  4UOR A;  2W8D A;  3TWZ A;  1EQJ A;  4B56 A;  4MY4 A;  1EW2 A;  5LRN A;  1KH9 A;  3TG0 A;  3BDG B;  2W5Q A;  4YR1 A;  1EI6 A;  1HDH A;  2G9Y A;  3IGY B;  1ELY A;  1URA A;  3M7V A;  1URB A;  5EGE A;  1KH4 A;  2GA3 A;  1AJB A;  2IUC B;  5L0K A;  4NWX A;  3MK0 A;  1HQA A;  5DLT A;  5AJ9 A;  1KH5 A;  3OT9 A;  2W8S A;  1FSU A;  1EJJ A;  3UN5 A;  4UOO A;  1AJC A;  1ALI A;  3IGZ B;  1EW8 A;  3Q3Q A;  1EW9 A;  3DYC A;  4LRC A;  3NKO A;  3UN2 A;  5C66 A;  1ALJ A;  4GTY A;  4LRF A;  4KJG A;  5TJ3 A;  2XR9 A;  4LRA A;  3NVL A;  4LRB A;  5IJQ A;  1KHJ A;  3BDH A;  3SZZ A;  5L0B A;  4TN0 A;  3DPC A;  4CYR A;  4GTW A;  3IDD A;  2W5V A;  1KHN A;  2W5W A;  3T00 A;  4NWJ A;  1SHN A;  5INH A;  3NKR A;  1ALH A;  2QZU A;  3M8Y A;  4ZG9 A;  1KHL A;  3MK1 A;  3UN3 A;  5KXA A;  1ELZ A;  2D1G A;  2ZKT A;  4GTZ A;  5IJS A;  5K4P A;  2ANH A;  4LR9 A;  4QAX A;  1Y6V A;  5GRR A;  4KAY A;  3NKM A;  3WBH A;  4MIV A;  1ALK A;  1E2S P;  2GLQ A;  4UPL A;  4UOP A;  1KH7 A;  4UPI A;  3T01 A;  3BDF A;  2VQR A;  5LQQ A;  3KD8 A;  1P49 A;  3MK2 A;  3CMR A;  1Y7A A;  2GSN A;  5LRM A;  4CXS A;  3TX0 A;  4KJD A;  4FDI A;  1ZEF A; 
#chains in the Genus database with same CATH topology
 4LR2 A;  4ZGA A;  1ED8 A;  3WAY A;  5L0E A;  4KAV A;  3NKQ A;  3WAV A;  1ANJ A;  4GTX A;  1AUK A;  3E2D A;  2IFY A;  3UNY A;  4CYS A;  4CXK A;  2W5R A;  1E1Z P;  1ED9 A;  1N2K A;  5EGH A;  4LR8 A;  1E3C P;  3NKP A;  2GSU A;  5LIA A;  2W5S A;  3LXQ A;  1K7H A;  3M8W A;  3WAW A;  4ZG6 A;  1N2L A;  5GOV A;  3BDG A;  2GSO A;  4LR7 A;  4FDJ A;  1SHQ A;  4N7T A;  4LQY A;  4UPK A;  2RH6 A;  3A52 A;  3WAX A;  4UPH A;  3T02 A;  5DLW A;  2XRG A;  1ZED A;  1O99 A;  1O98 A;  4LRE A;  4CXU A;  1AJD A;  2IUC A;  4KM4 A;  4MHX A;  1ELX A;  1KHK A;  3B5Q A;  3ED4 A;  3NKN A;  2X98 A;  1AJA A;  3SZY A;  3UO0 A;  5DLV A;  4ZG7 A;  2W5T A;  1HJK A;  3M8Z A;  4LRD A;  1E33 P;  1ZEB A;  1ANI A;  5HRT A;  1B8J A;  2W5X A;  4UOR A;  2W8D A;  3TWZ A;  1EQJ A;  4B56 A;  4MY4 A;  1EW2 A;  5LRN A;  1KH9 A;  3TG0 A;  3BDG B;  2W5Q A;  4YR1 A;  1EI6 A;  1HDH A;  2G9Y A;  3IGY B;  1ELY A;  1URA A;  3M7V A;  1URB A;  5EGE A;  1KH4 A;  2GA3 A;  1AJB A;  2IUC B;  5L0K A;  4NWX A;  3MK0 A;  1HQA A;  5DLT A;  5AJ9 A;  1KH5 A;  3OT9 A;  2W8S A;  1FSU A;  1EJJ A;  3UN5 A;  4UOO A;  1AJC A;  1ALI A;  3IGZ B;  1EW8 A;  3Q3Q A;  1EW9 A;  3DYC A;  4LRC A;  3NKO A;  3UN2 A;  5C66 A;  1ALJ A;  4GTY A;  4LRF A;  4KJG A;  5TJ3 A;  2XR9 A;  4LRA A;  3NVL A;  4LRB A;  5IJQ A;  1KHJ A;  3BDH A;  3SZZ A;  5L0B A;  4TN0 A;  3DPC A;  4CYR A;  4GTW A;  3IDD A;  2W5V A;  1KHN A;  2W5W A;  3T00 A;  4NWJ A;  1SHN A;  5INH A;  3NKR A;  1ALH A;  2QZU A;  3M8Y A;  4ZG9 A;  1KHL A;  3MK1 A;  3UN3 A;  5KXA A;  1ELZ A;  2D1G A;  2ZKT A;  4GTZ A;  5IJS A;  5K4P A;  2ANH A;  4LR9 A;  4QAX A;  1Y6V A;  5GRR A;  4KAY A;  3NKM A;  3WBH A;  4MIV A;  1ALK A;  1E2S P;  2GLQ A;  4UPL A;  4UOP A;  1KH7 A;  4UPI A;  3T01 A;  3BDF A;  2VQR A;  5LQQ A;  3KD8 A;  1P49 A;  3MK2 A;  3CMR A;  1Y7A A;  2GSN A;  5LRM A;  4CXS A;  3TX0 A;  4KJD A;  4FDI A;  1ZEF A; 
#chains in the Genus database with same CATH homology
 4LR2 A;  4ZGA A;  1ED8 A;  3WAY A;  5L0E A;  4KAV A;  3NKQ A;  3WAV A;  1ANJ A;  4GTX A;  1AUK A;  3E2D A;  2IFY A;  3UNY A;  4CYS A;  4CXK A;  2W5R A;  1E1Z P;  1ED9 A;  1N2K A;  5EGH A;  4LR8 A;  1E3C P;  3NKP A;  2GSU A;  5LIA A;  2W5S A;  3LXQ A;  1K7H A;  3M8W A;  3WAW A;  4ZG6 A;  1N2L A;  5GOV A;  3BDG A;  2GSO A;  4LR7 A;  4FDJ A;  1SHQ A;  4N7T A;  4LQY A;  4UPK A;  2RH6 A;  3A52 A;  3WAX A;  4UPH A;  3T02 A;  5DLW A;  2XRG A;  1ZED A;  1O99 A;  1O98 A;  4LRE A;  4CXU A;  1AJD A;  2IUC A;  4KM4 A;  4MHX A;  1ELX A;  1KHK A;  3B5Q A;  3ED4 A;  3NKN A;  2X98 A;  1AJA A;  3SZY A;  3UO0 A;  5DLV A;  4ZG7 A;  2W5T A;  1HJK A;  3M8Z A;  4LRD A;  1E33 P;  1ZEB A;  1ANI A;  5HRT A;  1B8J A;  2W5X A;  4UOR A;  2W8D A;  3TWZ A;  1EQJ A;  4B56 A;  4MY4 A;  1EW2 A;  5LRN A;  1KH9 A;  3TG0 A;  3BDG B;  2W5Q A;  4YR1 A;  1EI6 A;  1HDH A;  2G9Y A;  3IGY B;  1ELY A;  1URA A;  3M7V A;  1URB A;  5EGE A;  1KH4 A;  2GA3 A;  1AJB A;  2IUC B;  5L0K A;  4NWX A;  3MK0 A;  1HQA A;  5DLT A;  5AJ9 A;  1KH5 A;  3OT9 A;  2W8S A;  1FSU A;  1EJJ A;  3UN5 A;  4UOO A;  1AJC A;  1ALI A;  3IGZ B;  1EW8 A;  3Q3Q A;  1EW9 A;  3DYC A;  4LRC A;  3NKO A;  3UN2 A;  5C66 A;  1ALJ A;  4GTY A;  4LRF A;  4KJG A;  5TJ3 A;  2XR9 A;  4LRA A;  3NVL A;  4LRB A;  5IJQ A;  1KHJ A;  3BDH A;  3SZZ A;  5L0B A;  4TN0 A;  3DPC A;  4CYR A;  4GTW A;  3IDD A;  2W5V A;  1KHN A;  2W5W A;  3T00 A;  4NWJ A;  1SHN A;  5INH A;  3NKR A;  1ALH A;  2QZU A;  3M8Y A;  4ZG9 A;  1KHL A;  3MK1 A;  3UN3 A;  5KXA A;  1ELZ A;  2D1G A;  2ZKT A;  4GTZ A;  5IJS A;  5K4P A;  2ANH A;  4LR9 A;  4QAX A;  1Y6V A;  5GRR A;  4KAY A;  3NKM A;  3WBH A;  4MIV A;  1ALK A;  1E2S P;  2GLQ A;  4UPL A;  4UOP A;  1KH7 A;  4UPI A;  3T01 A;  3BDF A;  2VQR A;  5LQQ A;  3KD8 A;  1P49 A;  3MK2 A;  3CMR A;  1Y7A A;  2GSN A;  5LRM A;  4CXS A;  3TX0 A;  4KJD A;  4FDI A;  1ZEF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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