2W5SA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 163
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5sA02
3B5QA 1O98A 3DPCA 1B8JA 5GOVA 1EJJA 4NWJA 2W5RA 3BDFA 1KHJA 3NKQA 3M8WA 1HQAA 1URBA 2VQRA 4KJDA 1N2LA 1EQJA 3BDHA 3NKNA 3M8YA 3WAWA 5L0EA 1KHLA 4KAVA 4KJGA 1K7HA 1KH4A 5HRTA 5LRNA 4CXSA 4UOPA 1ALIA 1ALKA 3TG0A 3BDGA 4LQYA 2GSUA 1FSUA 4LRBA 3WAXA 5TJ3A 3WAYA 3UN2A 2IFYA 1ALJA 1KHNA 3UNYA 1ANIA 3T01A 4YR1A 4ZGAA 4QAXA 2W8DA 1Y6VA 4LREA 1E1ZP 3T00A 1N2KA 3KD8A 1E33P 4ZG9A 2RH6A 2W5XA 3MK2A 3MK0A 5C66A 5IJSA 1ZEDA 2IUCA 3SZZA 2ANHA 3IGZB 4ZG6A 1EW2A 2W5QA 2W5WA 3DYCA 1AUKA 1AJBA 1EI6A 3NVLA 1ZEBA 5K4PA 3Q3QA 4LRFA 4CXKA 5LQQA 1ELXA 2XR9A 4LRCA 2W5TA 1ALHA 1E3CP 1Y7AA 3CMRA 4LR2A 3TX0A 4UPKA 3BDGB 1KH5A 4UPHA 3TWZA 4TN0A 5KXAA 3UN5A 3NKPA 3IDDA 2GA3A 3A52A 1AJAA 4GTXA 1O99A 2XRGA 4LR7A 5DLWA 4UPLA 3IGYB 3WBHA 4CYSA 4UOOA 1ZEFA 3E2DA 1ELYA 2IUCB 4UORA 5L0BA 4GTWA 5AJ9A 4CYRA 2W8SA 4LR9A 3SZYA 1EW8A 5EGHA 5IJQA 3WAVA 4MHXA 4CXUA 1KH7A 3UO0A 5L0KA 2GSNA 5DLTA 4GTZA 4NWXA 4LR8A 4MIVA 5LRMA 1E2SP 1AJDA 3M8ZA 5EGEA 2ZKTA 1EW9A 4FDIA 2W5SA 1HJKA 3LXQA 3M7VA 4KM4A 1HDHA 4UPIA 5LIAA 4MY4A 3UN3A 1SHNA 2GSOA 4GTYA 4B56A 1AJCA 4LRDA 5DLVA 2W5VA 4LRAA 1ANJA 5INHA 1ELZA 1URAA 1KHKA 2G9YA 2QZUA 2D1GA 1ED9A 2GLQA 3MK1A 3NKRA 4N7TA 1P49A 3NKMA 3T02A 1ED8A 5GRRA 4FDJA 3ED4A 1SHQA 4ZG7A 4KAYA 3NKOA 2X98A 1KH9A 3OT9A
chains in the Genus database with same CATH superfamily
3B5QA 1O98A 3DPCA 1B8JA 5GOVA 1EJJA 4NWJA 2W5RA 3BDFA 1KHJA 3NKQA 3M8WA 1HQAA 1URBA 2VQRA 4KJDA 1N2LA 1EQJA 3BDHA 3NKNA 3M8YA 3WAWA 5L0EA 1KHLA 4KAVA 4KJGA 1K7HA 1KH4A 5HRTA 5LRNA 4CXSA 4UOPA 1ALIA 1ALKA 3TG0A 3BDGA 4LQYA 2GSUA 1FSUA 4LRBA 3WAXA 5TJ3A 3WAYA 3UN2A 2IFYA 1ALJA 1KHNA 3UNYA 1ANIA 3T01A 4YR1A 4ZGAA 4QAXA 2W8DA 1Y6VA 4LREA 1E1ZP 3T00A 1N2KA 3KD8A 1E33P 4ZG9A 2RH6A 2W5XA 3MK2A 3MK0A 5C66A 5IJSA 1ZEDA 2IUCA 3SZZA 2ANHA 3IGZB 4ZG6A 1EW2A 2W5QA 2W5WA 3DYCA 1AUKA 1AJBA 1EI6A 3NVLA 1ZEBA 5K4PA 3Q3QA 4LRFA 4CXKA 5LQQA 1ELXA 2XR9A 4LRCA 2W5TA 1ALHA 1E3CP 1Y7AA 3CMRA 4LR2A 3TX0A 4UPKA 3BDGB 1KH5A 4UPHA 3TWZA 4TN0A 5KXAA 3UN5A 3NKPA 3IDDA 2GA3A 3A52A 1AJAA 4GTXA 1O99A 2XRGA 4LR7A 5DLWA 4UPLA 3IGYB 3WBHA 4CYSA 4UOOA 1ZEFA 3E2DA 1ELYA 2IUCB 4UORA 5L0BA 4GTWA 5AJ9A 4CYRA 2W8SA 4LR9A 3SZYA 1EW8A 5EGHA 5IJQA 3WAVA 4MHXA 4CXUA 1KH7A 3UO0A 5L0KA 2GSNA 5DLTA 4GTZA 4NWXA 4LR8A 4MIVA 5LRMA 1E2SP 1AJDA 3M8ZA 5EGEA 2ZKTA 1EW9A 4FDIA 2W5SA 1HJKA 3LXQA 3M7VA 4KM4A 1HDHA 4UPIA 5LIAA 4MY4A 3UN3A 1SHNA 2GSOA 4GTYA 4B56A 1AJCA 4LRDA 5DLVA 2W5VA 4LRAA 1ANJA 5INHA 1ELZA 1URAA 1KHKA 2G9YA 2QZUA 2D1GA 1ED9A 2GLQA 3MK1A 3NKRA 4N7TA 1P49A 3NKMA 3T02A 1ED8A 5GRRA 4FDJA 3ED4A 1SHQA 4ZG7A 4KAYA 3NKOA 2X98A 1KH9A 3OT9A
chains in the Genus database with same CATH topology
3B5QA 1O98A 3DPCA 1B8JA 5GOVA 1EJJA 4NWJA 2W5RA 3BDFA 1KHJA 3NKQA 3M8WA 1HQAA 1URBA 2VQRA 4KJDA 1N2LA 1EQJA 3BDHA 3NKNA 3M8YA 3WAWA 5L0EA 1KHLA 4KAVA 4KJGA 1K7HA 1KH4A 5HRTA 5LRNA 4CXSA 4UOPA 1ALIA 1ALKA 3TG0A 3BDGA 4LQYA 2GSUA 1FSUA 4LRBA 3WAXA 5TJ3A 3WAYA 3UN2A 2IFYA 1ALJA 1KHNA 3UNYA 1ANIA 3T01A 4YR1A 4ZGAA 4QAXA 2W8DA 1Y6VA 4LREA 1E1ZP 3T00A 1N2KA 3KD8A 1E33P 4ZG9A 2RH6A 2W5XA 3MK2A 3MK0A 5C66A 5IJSA 1ZEDA 2IUCA 3SZZA 2ANHA 3IGZB 4ZG6A 1EW2A 2W5QA 2W5WA 3DYCA 1AUKA 1AJBA 1EI6A 3NVLA 1ZEBA 5K4PA 3Q3QA 4LRFA 4CXKA 5LQQA 1ELXA 2XR9A 4LRCA 2W5TA 1ALHA 1E3CP 1Y7AA 3CMRA 4LR2A 3TX0A 4UPKA 3BDGB 1KH5A 4UPHA 3TWZA 4TN0A 5KXAA 3UN5A 3NKPA 3IDDA 2GA3A 3A52A 1AJAA 4GTXA 1O99A 2XRGA 4LR7A 5DLWA 4UPLA 3IGYB 3WBHA 4CYSA 4UOOA 1ZEFA 3E2DA 1ELYA 2IUCB 4UORA 5L0BA 4GTWA 5AJ9A 4CYRA 2W8SA 4LR9A 3SZYA 1EW8A 5EGHA 5IJQA 3WAVA 4MHXA 4CXUA 1KH7A 3UO0A 5L0KA 2GSNA 5DLTA 4GTZA 4NWXA 4LR8A 4MIVA 5LRMA 1E2SP 1AJDA 3M8ZA 5EGEA 2ZKTA 1EW9A 4FDIA 2W5SA 1HJKA 3LXQA 3M7VA 4KM4A 1HDHA 4UPIA 5LIAA 4MY4A 3UN3A 1SHNA 2GSOA 4GTYA 4B56A 1AJCA 4LRDA 5DLVA 2W5VA 4LRAA 1ANJA 5INHA 1ELZA 1URAA 1KHKA 2G9YA 2QZUA 2D1GA 1ED9A 2GLQA 3MK1A 3NKRA 4N7TA 1P49A 3NKMA 3T02A 1ED8A 5GRRA 4FDJA 3ED4A 1SHQA 4ZG7A 4KAYA 3NKOA 2X98A 1KH9A 3OT9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B5Q A;  1O98 A;  3DPC A;  1B8J A;  5GOV A;  1EJJ A;  4NWJ A;  2W5R A;  3BDF A;  1KHJ A;  3NKQ A;  3M8W A;  1HQA A;  1URB A;  2VQR A;  4KJD A;  1N2L A;  1EQJ A;  3BDH A;  3NKN A;  3M8Y A;  3WAW A;  5L0E A;  1KHL A;  4KAV A;  4KJG A;  1K7H A;  1KH4 A;  5HRT A;  5LRN A;  4CXS A;  4UOP A;  1ALI A;  1ALK A;  3TG0 A;  3BDG A;  4LQY A;  2GSU A;  1FSU A;  4LRB A;  3WAX A;  5TJ3 A;  3WAY A;  3UN2 A;  2IFY A;  1ALJ A;  1KHN A;  3UNY A;  1ANI A;  3T01 A;  4YR1 A;  4ZGA A;  4QAX A;  2W8D A;  1Y6V A;  4LRE A;  1E1Z P;  3T00 A;  1N2K A;  3KD8 A;  1E33 P;  4ZG9 A;  2RH6 A;  2W5X A;  3MK2 A;  3MK0 A;  5C66 A;  5IJS A;  1ZED A;  2IUC A;  3SZZ A;  2ANH A;  3IGZ B;  4ZG6 A;  1EW2 A;  2W5Q A;  2W5W A;  3DYC A;  1AUK A;  1AJB A;  1EI6 A;  3NVL A;  1ZEB A;  5K4P A;  3Q3Q A;  4LRF A;  4CXK A;  5LQQ A;  1ELX A;  2XR9 A;  4LRC A;  2W5T A;  1ALH A;  1E3C P;  1Y7A A;  3CMR A;  4LR2 A;  3TX0 A;  4UPK A;  3BDG B;  1KH5 A;  4UPH A;  3TWZ A;  4TN0 A;  5KXA A;  3UN5 A;  3NKP A;  3IDD A;  2GA3 A;  3A52 A;  1AJA A;  4GTX A;  1O99 A;  2XRG A;  4LR7 A;  5DLW A;  4UPL A;  3IGY B;  3WBH A;  4CYS A;  4UOO A;  1ZEF A;  3E2D A;  1ELY A;  2IUC B;  4UOR A;  5L0B A;  4GTW A;  5AJ9 A;  4CYR A;  2W8S A;  4LR9 A;  3SZY A;  1EW8 A;  5EGH A;  5IJQ A;  3WAV A;  4MHX A;  4CXU A;  1KH7 A;  3UO0 A;  5L0K A;  2GSN A;  5DLT A;  4GTZ A;  4NWX A;  4LR8 A;  4MIV A;  5LRM A;  1E2S P;  1AJD A;  3M8Z A;  5EGE A;  2ZKT A;  1EW9 A;  4FDI A;  2W5S A;  1HJK A;  3LXQ A;  3M7V A;  4KM4 A;  1HDH A;  4UPI A;  5LIA A;  4MY4 A;  3UN3 A;  1SHN A;  2GSO A;  4GTY A;  4B56 A;  1AJC A;  4LRD A;  5DLV A;  2W5V A;  4LRA A;  1ANJ A;  5INH A;  1ELZ A;  1URA A;  1KHK A;  2G9Y A;  2QZU A;  2D1G A;  1ED9 A;  2GLQ A;  3MK1 A;  3NKR A;  4N7T A;  1P49 A;  3NKM A;  3T02 A;  1ED8 A;  5GRR A;  4FDJ A;  3ED4 A;  1SHQ A;  4ZG7 A;  4KAY A;  3NKO A;  2X98 A;  1KH9 A;  3OT9 A; 
#chains in the Genus database with same CATH topology
 3B5Q A;  1O98 A;  3DPC A;  1B8J A;  5GOV A;  1EJJ A;  4NWJ A;  2W5R A;  3BDF A;  1KHJ A;  3NKQ A;  3M8W A;  1HQA A;  1URB A;  2VQR A;  4KJD A;  1N2L A;  1EQJ A;  3BDH A;  3NKN A;  3M8Y A;  3WAW A;  5L0E A;  1KHL A;  4KAV A;  4KJG A;  1K7H A;  1KH4 A;  5HRT A;  5LRN A;  4CXS A;  4UOP A;  1ALI A;  1ALK A;  3TG0 A;  3BDG A;  4LQY A;  2GSU A;  1FSU A;  4LRB A;  3WAX A;  5TJ3 A;  3WAY A;  3UN2 A;  2IFY A;  1ALJ A;  1KHN A;  3UNY A;  1ANI A;  3T01 A;  4YR1 A;  4ZGA A;  4QAX A;  2W8D A;  1Y6V A;  4LRE A;  1E1Z P;  3T00 A;  1N2K A;  3KD8 A;  1E33 P;  4ZG9 A;  2RH6 A;  2W5X A;  3MK2 A;  3MK0 A;  5C66 A;  5IJS A;  1ZED A;  2IUC A;  3SZZ A;  2ANH A;  3IGZ B;  4ZG6 A;  1EW2 A;  2W5Q A;  2W5W A;  3DYC A;  1AUK A;  1AJB A;  1EI6 A;  3NVL A;  1ZEB A;  5K4P A;  3Q3Q A;  4LRF A;  4CXK A;  5LQQ A;  1ELX A;  2XR9 A;  4LRC A;  2W5T A;  1ALH A;  1E3C P;  1Y7A A;  3CMR A;  4LR2 A;  3TX0 A;  4UPK A;  3BDG B;  1KH5 A;  4UPH A;  3TWZ A;  4TN0 A;  5KXA A;  3UN5 A;  3NKP A;  3IDD A;  2GA3 A;  3A52 A;  1AJA A;  4GTX A;  1O99 A;  2XRG A;  4LR7 A;  5DLW A;  4UPL A;  3IGY B;  3WBH A;  4CYS A;  4UOO A;  1ZEF A;  3E2D A;  1ELY A;  2IUC B;  4UOR A;  5L0B A;  4GTW A;  5AJ9 A;  4CYR A;  2W8S A;  4LR9 A;  3SZY A;  1EW8 A;  5EGH A;  5IJQ A;  3WAV A;  4MHX A;  4CXU A;  1KH7 A;  3UO0 A;  5L0K A;  2GSN A;  5DLT A;  4GTZ A;  4NWX A;  4LR8 A;  4MIV A;  5LRM A;  1E2S P;  1AJD A;  3M8Z A;  5EGE A;  2ZKT A;  1EW9 A;  4FDI A;  2W5S A;  1HJK A;  3LXQ A;  3M7V A;  4KM4 A;  1HDH A;  4UPI A;  5LIA A;  4MY4 A;  3UN3 A;  1SHN A;  2GSO A;  4GTY A;  4B56 A;  1AJC A;  4LRD A;  5DLV A;  2W5V A;  4LRA A;  1ANJ A;  5INH A;  1ELZ A;  1URA A;  1KHK A;  2G9Y A;  2QZU A;  2D1G A;  1ED9 A;  2GLQ A;  3MK1 A;  3NKR A;  4N7T A;  1P49 A;  3NKM A;  3T02 A;  1ED8 A;  5GRR A;  4FDJ A;  3ED4 A;  1SHQ A;  4ZG7 A;  4KAY A;  3NKO A;  2X98 A;  1KH9 A;  3OT9 A; 
#chains in the Genus database with same CATH homology
 3B5Q A;  1O98 A;  3DPC A;  1B8J A;  5GOV A;  1EJJ A;  4NWJ A;  2W5R A;  3BDF A;  1KHJ A;  3NKQ A;  3M8W A;  1HQA A;  1URB A;  2VQR A;  4KJD A;  1N2L A;  1EQJ A;  3BDH A;  3NKN A;  3M8Y A;  3WAW A;  5L0E A;  1KHL A;  4KAV A;  4KJG A;  1K7H A;  1KH4 A;  5HRT A;  5LRN A;  4CXS A;  4UOP A;  1ALI A;  1ALK A;  3TG0 A;  3BDG A;  4LQY A;  2GSU A;  1FSU A;  4LRB A;  3WAX A;  5TJ3 A;  3WAY A;  3UN2 A;  2IFY A;  1ALJ A;  1KHN A;  3UNY A;  1ANI A;  3T01 A;  4YR1 A;  4ZGA A;  4QAX A;  2W8D A;  1Y6V A;  4LRE A;  1E1Z P;  3T00 A;  1N2K A;  3KD8 A;  1E33 P;  4ZG9 A;  2RH6 A;  2W5X A;  3MK2 A;  3MK0 A;  5C66 A;  5IJS A;  1ZED A;  2IUC A;  3SZZ A;  2ANH A;  3IGZ B;  4ZG6 A;  1EW2 A;  2W5Q A;  2W5W A;  3DYC A;  1AUK A;  1AJB A;  1EI6 A;  3NVL A;  1ZEB A;  5K4P A;  3Q3Q A;  4LRF A;  4CXK A;  5LQQ A;  1ELX A;  2XR9 A;  4LRC A;  2W5T A;  1ALH A;  1E3C P;  1Y7A A;  3CMR A;  4LR2 A;  3TX0 A;  4UPK A;  3BDG B;  1KH5 A;  4UPH A;  3TWZ A;  4TN0 A;  5KXA A;  3UN5 A;  3NKP A;  3IDD A;  2GA3 A;  3A52 A;  1AJA A;  4GTX A;  1O99 A;  2XRG A;  4LR7 A;  5DLW A;  4UPL A;  3IGY B;  3WBH A;  4CYS A;  4UOO A;  1ZEF A;  3E2D A;  1ELY A;  2IUC B;  4UOR A;  5L0B A;  4GTW A;  5AJ9 A;  4CYR A;  2W8S A;  4LR9 A;  3SZY A;  1EW8 A;  5EGH A;  5IJQ A;  3WAV A;  4MHX A;  4CXU A;  1KH7 A;  3UO0 A;  5L0K A;  2GSN A;  5DLT A;  4GTZ A;  4NWX A;  4LR8 A;  4MIV A;  5LRM A;  1E2S P;  1AJD A;  3M8Z A;  5EGE A;  2ZKT A;  1EW9 A;  4FDI A;  2W5S A;  1HJK A;  3LXQ A;  3M7V A;  4KM4 A;  1HDH A;  4UPI A;  5LIA A;  4MY4 A;  3UN3 A;  1SHN A;  2GSO A;  4GTY A;  4B56 A;  1AJC A;  4LRD A;  5DLV A;  2W5V A;  4LRA A;  1ANJ A;  5INH A;  1ELZ A;  1URA A;  1KHK A;  2G9Y A;  2QZU A;  2D1G A;  1ED9 A;  2GLQ A;  3MK1 A;  3NKR A;  4N7T A;  1P49 A;  3NKM A;  3T02 A;  1ED8 A;  5GRR A;  4FDJ A;  3ED4 A;  1SHQ A;  4ZG7 A;  4KAY A;  3NKO A;  2X98 A;  1KH9 A;  3OT9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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