2W5SA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
424
structure length
424
Chain Sequence
b'SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 163
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5sA02
5LIAA 5L0EA 3CMRA 3IDDA 4FDIA 3OT9A 4UPIA 4KAYA 5AJ9A 4MIVA 1B8JA 1ELYA 4LR2A 3M8ZA 2IFYA 4UOOA 5LRMA 1FSUA 3BDFA 3NKQA 4LRCA 1HJKA 4UOPA 4TN0A 1ZEBA 1P49A 1KHKA 3DPCA 5KXAA 2GA3A 1KHJA 2W5TA 3A52A 3ED4A 5DLTA 1ELZA 3IGYB 5DLWA 4ZG7A 3TG0A 4MY4A 2RH6A 4CXSA 3NKOA 2ZKTA 4KJGA 3WAYA 5L0KA 2GSOA 3WAXA 3IGZB 3MK2A 3NVLA 2ANHA 5EGEA 1KH4A 1EI6A 2W5WA 3LXQA 4KJDA 2QZUA 1ALHA 1ANJA 4CYSA 3M8YA 5HRTA 4LRFA 4ZGAA 4ZG6A 2W5XA 2W5QA 1URBA 3E2DA 1HQAA 1ELXA 4LREA 2GSNA 1AJBA 2XR9A 5IJQA 3UN2A 5DLVA 1KHNA 4CXKA 4LR8A 3TWZA 2IUCA 2XRGA 3NKMA 5L0BA 2W8SA 5GRRA 2GSUA 1HDHA 3MK0A 1EW2A 5IJSA 1EW8A 4KAVA 4UORA 4UPLA 1KHLA 3TX0A 3M8WA 3UN3A 1E3CP 1KH9A 4GTZA 4LR7A 4B56A 2VQRA 3NKNA 4UPKA 1AJCA 1URAA 2D1GA 2W8DA 3NKPA 3MK1A 1ED9A 3SZZA 1N2LA 4N7TA 5K4PA 1O99A 4QAXA 1ALJA 2GLQA 3UNYA 4ZG9A 3NKRA 1SHQA 1EJJA 1ALKA 1ED8A 4LRDA 4GTYA 1SHNA 2X98A 1ZEDA 1E2SP 4LRBA 5TJ3A 4CXUA 2IUCB 1N2KA 3SZYA 4YR1A 1ALIA 2W5VA 5EGHA 5LQQA 3B5QA 3WBHA 1AUKA 3KD8A 1Y7AA 3BDGA 1ZEFA 3BDHA 4CYRA 3WAVA 1E1ZP 3UN5A 4MHXA 1O98A 2W5SA 1AJAA 3BDGB 5GOVA 4KM4A 1EQJA 4GTWA 3UO0A 5C66A 4LR9A 1EW9A 1Y6VA 2G9YA 3T00A 1AJDA 3T02A 3M7VA 5INHA 1K7HA 4GTXA 4NWXA 1KH7A 3DYCA 3T01A 2W5RA 1E33P 4UPHA 1KH5A 4FDJA 5LRNA 4LRAA 4NWJA 4LQYA 3WAWA 1ANIA 3Q3QA
chains in the Genus database with same CATH superfamily
5LIAA 5L0EA 3CMRA 3IDDA 4FDIA 3OT9A 4UPIA 4KAYA 5AJ9A 4MIVA 1B8JA 1ELYA 4LR2A 3M8ZA 2IFYA 4UOOA 5LRMA 1FSUA 3BDFA 3NKQA 4LRCA 1HJKA 4UOPA 4TN0A 1ZEBA 1P49A 1KHKA 3DPCA 5KXAA 2GA3A 1KHJA 2W5TA 3A52A 3ED4A 5DLTA 1ELZA 3IGYB 5DLWA 4ZG7A 3TG0A 4MY4A 2RH6A 4CXSA 3NKOA 2ZKTA 4KJGA 3WAYA 5L0KA 2GSOA 3WAXA 3IGZB 3MK2A 3NVLA 2ANHA 5EGEA 1KH4A 1EI6A 2W5WA 3LXQA 4KJDA 2QZUA 1ALHA 1ANJA 4CYSA 3M8YA 5HRTA 4LRFA 4ZGAA 4ZG6A 2W5XA 2W5QA 1URBA 3E2DA 1HQAA 1ELXA 4LREA 2GSNA 1AJBA 2XR9A 5IJQA 3UN2A 5DLVA 1KHNA 4CXKA 4LR8A 3TWZA 2IUCA 2XRGA 3NKMA 5L0BA 2W8SA 5GRRA 2GSUA 1HDHA 3MK0A 1EW2A 5IJSA 1EW8A 4KAVA 4UORA 4UPLA 1KHLA 3TX0A 3M8WA 3UN3A 1E3CP 1KH9A 4GTZA 4LR7A 4B56A 2VQRA 3NKNA 4UPKA 1AJCA 1URAA 2D1GA 2W8DA 3NKPA 3MK1A 1ED9A 3SZZA 1N2LA 4N7TA 5K4PA 1O99A 4QAXA 1ALJA 2GLQA 3UNYA 4ZG9A 3NKRA 1SHQA 1EJJA 1ALKA 1ED8A 4LRDA 4GTYA 1SHNA 2X98A 1ZEDA 1E2SP 4LRBA 5TJ3A 4CXUA 2IUCB 1N2KA 3SZYA 4YR1A 1ALIA 2W5VA 5EGHA 5LQQA 3B5QA 3WBHA 1AUKA 3KD8A 1Y7AA 3BDGA 1ZEFA 3BDHA 4CYRA 3WAVA 1E1ZP 3UN5A 4MHXA 1O98A 2W5SA 1AJAA 3BDGB 5GOVA 4KM4A 1EQJA 4GTWA 3UO0A 5C66A 4LR9A 1EW9A 1Y6VA 2G9YA 3T00A 1AJDA 3T02A 3M7VA 5INHA 1K7HA 4GTXA 4NWXA 1KH7A 3DYCA 3T01A 2W5RA 1E33P 4UPHA 1KH5A 4FDJA 5LRNA 4LRAA 4NWJA 4LQYA 3WAWA 1ANIA 3Q3QA
chains in the Genus database with same CATH topology
5LIAA 5L0EA 3CMRA 3IDDA 4FDIA 3OT9A 4UPIA 4KAYA 5AJ9A 4MIVA 1B8JA 1ELYA 4LR2A 3M8ZA 2IFYA 4UOOA 5LRMA 1FSUA 3BDFA 3NKQA 4LRCA 1HJKA 4UOPA 4TN0A 1ZEBA 1P49A 1KHKA 3DPCA 5KXAA 2GA3A 1KHJA 2W5TA 3A52A 3ED4A 5DLTA 1ELZA 3IGYB 5DLWA 4ZG7A 3TG0A 4MY4A 2RH6A 4CXSA 3NKOA 2ZKTA 4KJGA 3WAYA 5L0KA 2GSOA 3WAXA 3IGZB 3MK2A 3NVLA 2ANHA 5EGEA 1KH4A 1EI6A 2W5WA 3LXQA 4KJDA 2QZUA 1ALHA 1ANJA 4CYSA 3M8YA 5HRTA 4LRFA 4ZGAA 4ZG6A 2W5XA 2W5QA 1URBA 3E2DA 1HQAA 1ELXA 4LREA 2GSNA 1AJBA 2XR9A 5IJQA 3UN2A 5DLVA 1KHNA 4CXKA 4LR8A 3TWZA 2IUCA 2XRGA 3NKMA 5L0BA 2W8SA 5GRRA 2GSUA 1HDHA 3MK0A 1EW2A 5IJSA 1EW8A 4KAVA 4UORA 4UPLA 1KHLA 3TX0A 3M8WA 3UN3A 1E3CP 1KH9A 4GTZA 4LR7A 4B56A 2VQRA 3NKNA 4UPKA 1AJCA 1URAA 2D1GA 2W8DA 3NKPA 3MK1A 1ED9A 3SZZA 1N2LA 4N7TA 5K4PA 1O99A 4QAXA 1ALJA 2GLQA 3UNYA 4ZG9A 3NKRA 1SHQA 1EJJA 1ALKA 1ED8A 4LRDA 4GTYA 1SHNA 2X98A 1ZEDA 1E2SP 4LRBA 5TJ3A 4CXUA 2IUCB 1N2KA 3SZYA 4YR1A 1ALIA 2W5VA 5EGHA 5LQQA 3B5QA 3WBHA 1AUKA 3KD8A 1Y7AA 3BDGA 1ZEFA 3BDHA 4CYRA 3WAVA 1E1ZP 3UN5A 4MHXA 1O98A 2W5SA 1AJAA 3BDGB 5GOVA 4KM4A 1EQJA 4GTWA 3UO0A 5C66A 4LR9A 1EW9A 1Y6VA 2G9YA 3T00A 1AJDA 3T02A 3M7VA 5INHA 1K7HA 4GTXA 4NWXA 1KH7A 3DYCA 3T01A 2W5RA 1E33P 4UPHA 1KH5A 4FDJA 5LRNA 4LRAA 4NWJA 4LQYA 3WAWA 1ANIA 3Q3QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5LIA A;  5L0E A;  3CMR A;  3IDD A;  4FDI A;  3OT9 A;  4UPI A;  4KAY A;  5AJ9 A;  4MIV A;  1B8J A;  1ELY A;  4LR2 A;  3M8Z A;  2IFY A;  4UOO A;  5LRM A;  1FSU A;  3BDF A;  3NKQ A;  4LRC A;  1HJK A;  4UOP A;  4TN0 A;  1ZEB A;  1P49 A;  1KHK A;  3DPC A;  5KXA A;  2GA3 A;  1KHJ A;  2W5T A;  3A52 A;  3ED4 A;  5DLT A;  1ELZ A;  3IGY B;  5DLW A;  4ZG7 A;  3TG0 A;  4MY4 A;  2RH6 A;  4CXS A;  3NKO A;  2ZKT A;  4KJG A;  3WAY A;  5L0K A;  2GSO A;  3WAX A;  3IGZ B;  3MK2 A;  3NVL A;  2ANH A;  5EGE A;  1KH4 A;  1EI6 A;  2W5W A;  3LXQ A;  4KJD A;  2QZU A;  1ALH A;  1ANJ A;  4CYS A;  3M8Y A;  5HRT A;  4LRF A;  4ZGA A;  4ZG6 A;  2W5X A;  2W5Q A;  1URB A;  3E2D A;  1HQA A;  1ELX A;  4LRE A;  2GSN A;  1AJB A;  2XR9 A;  5IJQ A;  3UN2 A;  5DLV A;  1KHN A;  4CXK A;  4LR8 A;  3TWZ A;  2IUC A;  2XRG A;  3NKM A;  5L0B A;  2W8S A;  5GRR A;  2GSU A;  1HDH A;  3MK0 A;  1EW2 A;  5IJS A;  1EW8 A;  4KAV A;  4UOR A;  4UPL A;  1KHL A;  3TX0 A;  3M8W A;  3UN3 A;  1E3C P;  1KH9 A;  4GTZ A;  4LR7 A;  4B56 A;  2VQR A;  3NKN A;  4UPK A;  1AJC A;  1URA A;  2D1G A;  2W8D A;  3NKP A;  3MK1 A;  1ED9 A;  3SZZ A;  1N2L A;  4N7T A;  5K4P A;  1O99 A;  4QAX A;  1ALJ A;  2GLQ A;  3UNY A;  4ZG9 A;  3NKR A;  1SHQ A;  1EJJ A;  1ALK A;  1ED8 A;  4LRD A;  4GTY A;  1SHN A;  2X98 A;  1ZED A;  1E2S P;  4LRB A;  5TJ3 A;  4CXU A;  2IUC B;  1N2K A;  3SZY A;  4YR1 A;  1ALI A;  2W5V A;  5EGH A;  5LQQ A;  3B5Q A;  3WBH A;  1AUK A;  3KD8 A;  1Y7A A;  3BDG A;  1ZEF A;  3BDH A;  4CYR A;  3WAV A;  1E1Z P;  3UN5 A;  4MHX A;  1O98 A;  2W5S A;  1AJA A;  3BDG B;  5GOV A;  4KM4 A;  1EQJ A;  4GTW A;  3UO0 A;  5C66 A;  4LR9 A;  1EW9 A;  1Y6V A;  2G9Y A;  3T00 A;  1AJD A;  3T02 A;  3M7V A;  5INH A;  1K7H A;  4GTX A;  4NWX A;  1KH7 A;  3DYC A;  3T01 A;  2W5R A;  1E33 P;  4UPH A;  1KH5 A;  4FDJ A;  5LRN A;  4LRA A;  4NWJ A;  4LQY A;  3WAW A;  1ANI A;  3Q3Q A; 
#chains in the Genus database with same CATH topology
 5LIA A;  5L0E A;  3CMR A;  3IDD A;  4FDI A;  3OT9 A;  4UPI A;  4KAY A;  5AJ9 A;  4MIV A;  1B8J A;  1ELY A;  4LR2 A;  3M8Z A;  2IFY A;  4UOO A;  5LRM A;  1FSU A;  3BDF A;  3NKQ A;  4LRC A;  1HJK A;  4UOP A;  4TN0 A;  1ZEB A;  1P49 A;  1KHK A;  3DPC A;  5KXA A;  2GA3 A;  1KHJ A;  2W5T A;  3A52 A;  3ED4 A;  5DLT A;  1ELZ A;  3IGY B;  5DLW A;  4ZG7 A;  3TG0 A;  4MY4 A;  2RH6 A;  4CXS A;  3NKO A;  2ZKT A;  4KJG A;  3WAY A;  5L0K A;  2GSO A;  3WAX A;  3IGZ B;  3MK2 A;  3NVL A;  2ANH A;  5EGE A;  1KH4 A;  1EI6 A;  2W5W A;  3LXQ A;  4KJD A;  2QZU A;  1ALH A;  1ANJ A;  4CYS A;  3M8Y A;  5HRT A;  4LRF A;  4ZGA A;  4ZG6 A;  2W5X A;  2W5Q A;  1URB A;  3E2D A;  1HQA A;  1ELX A;  4LRE A;  2GSN A;  1AJB A;  2XR9 A;  5IJQ A;  3UN2 A;  5DLV A;  1KHN A;  4CXK A;  4LR8 A;  3TWZ A;  2IUC A;  2XRG A;  3NKM A;  5L0B A;  2W8S A;  5GRR A;  2GSU A;  1HDH A;  3MK0 A;  1EW2 A;  5IJS A;  1EW8 A;  4KAV A;  4UOR A;  4UPL A;  1KHL A;  3TX0 A;  3M8W A;  3UN3 A;  1E3C P;  1KH9 A;  4GTZ A;  4LR7 A;  4B56 A;  2VQR A;  3NKN A;  4UPK A;  1AJC A;  1URA A;  2D1G A;  2W8D A;  3NKP A;  3MK1 A;  1ED9 A;  3SZZ A;  1N2L A;  4N7T A;  5K4P A;  1O99 A;  4QAX A;  1ALJ A;  2GLQ A;  3UNY A;  4ZG9 A;  3NKR A;  1SHQ A;  1EJJ A;  1ALK A;  1ED8 A;  4LRD A;  4GTY A;  1SHN A;  2X98 A;  1ZED A;  1E2S P;  4LRB A;  5TJ3 A;  4CXU A;  2IUC B;  1N2K A;  3SZY A;  4YR1 A;  1ALI A;  2W5V A;  5EGH A;  5LQQ A;  3B5Q A;  3WBH A;  1AUK A;  3KD8 A;  1Y7A A;  3BDG A;  1ZEF A;  3BDH A;  4CYR A;  3WAV A;  1E1Z P;  3UN5 A;  4MHX A;  1O98 A;  2W5S A;  1AJA A;  3BDG B;  5GOV A;  4KM4 A;  1EQJ A;  4GTW A;  3UO0 A;  5C66 A;  4LR9 A;  1EW9 A;  1Y6V A;  2G9Y A;  3T00 A;  1AJD A;  3T02 A;  3M7V A;  5INH A;  1K7H A;  4GTX A;  4NWX A;  1KH7 A;  3DYC A;  3T01 A;  2W5R A;  1E33 P;  4UPH A;  1KH5 A;  4FDJ A;  5LRN A;  4LRA A;  4NWJ A;  4LQY A;  3WAW A;  1ANI A;  3Q3Q A; 
#chains in the Genus database with same CATH homology
 5LIA A;  5L0E A;  3CMR A;  3IDD A;  4FDI A;  3OT9 A;  4UPI A;  4KAY A;  5AJ9 A;  4MIV A;  1B8J A;  1ELY A;  4LR2 A;  3M8Z A;  2IFY A;  4UOO A;  5LRM A;  1FSU A;  3BDF A;  3NKQ A;  4LRC A;  1HJK A;  4UOP A;  4TN0 A;  1ZEB A;  1P49 A;  1KHK A;  3DPC A;  5KXA A;  2GA3 A;  1KHJ A;  2W5T A;  3A52 A;  3ED4 A;  5DLT A;  1ELZ A;  3IGY B;  5DLW A;  4ZG7 A;  3TG0 A;  4MY4 A;  2RH6 A;  4CXS A;  3NKO A;  2ZKT A;  4KJG A;  3WAY A;  5L0K A;  2GSO A;  3WAX A;  3IGZ B;  3MK2 A;  3NVL A;  2ANH A;  5EGE A;  1KH4 A;  1EI6 A;  2W5W A;  3LXQ A;  4KJD A;  2QZU A;  1ALH A;  1ANJ A;  4CYS A;  3M8Y A;  5HRT A;  4LRF A;  4ZGA A;  4ZG6 A;  2W5X A;  2W5Q A;  1URB A;  3E2D A;  1HQA A;  1ELX A;  4LRE A;  2GSN A;  1AJB A;  2XR9 A;  5IJQ A;  3UN2 A;  5DLV A;  1KHN A;  4CXK A;  4LR8 A;  3TWZ A;  2IUC A;  2XRG A;  3NKM A;  5L0B A;  2W8S A;  5GRR A;  2GSU A;  1HDH A;  3MK0 A;  1EW2 A;  5IJS A;  1EW8 A;  4KAV A;  4UOR A;  4UPL A;  1KHL A;  3TX0 A;  3M8W A;  3UN3 A;  1E3C P;  1KH9 A;  4GTZ A;  4LR7 A;  4B56 A;  2VQR A;  3NKN A;  4UPK A;  1AJC A;  1URA A;  2D1G A;  2W8D A;  3NKP A;  3MK1 A;  1ED9 A;  3SZZ A;  1N2L A;  4N7T A;  5K4P A;  1O99 A;  4QAX A;  1ALJ A;  2GLQ A;  3UNY A;  4ZG9 A;  3NKR A;  1SHQ A;  1EJJ A;  1ALK A;  1ED8 A;  4LRD A;  4GTY A;  1SHN A;  2X98 A;  1ZED A;  1E2S P;  4LRB A;  5TJ3 A;  4CXU A;  2IUC B;  1N2K A;  3SZY A;  4YR1 A;  1ALI A;  2W5V A;  5EGH A;  5LQQ A;  3B5Q A;  3WBH A;  1AUK A;  3KD8 A;  1Y7A A;  3BDG A;  1ZEF A;  3BDH A;  4CYR A;  3WAV A;  1E1Z P;  3UN5 A;  4MHX A;  1O98 A;  2W5S A;  1AJA A;  3BDG B;  5GOV A;  4KM4 A;  1EQJ A;  4GTW A;  3UO0 A;  5C66 A;  4LR9 A;  1EW9 A;  1Y6V A;  2G9Y A;  3T00 A;  1AJD A;  3T02 A;  3M7V A;  5INH A;  1K7H A;  4GTX A;  4NWX A;  1KH7 A;  3DYC A;  3T01 A;  2W5R A;  1E33 P;  4UPH A;  1KH5 A;  4FDJ A;  5LRN A;  4LRA A;  4NWJ A;  4LQY A;  3WAW A;  1ANI A;  3Q3Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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