2W5SA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
total genus 163
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5sA02
3NKNA 1ALJA 1P49A 3WBHA 1EI6A 2W8SA 3IGZB 4KJGA 3BDHA 4QAXA 4ZG7A 4UPIA 4CXSA 5L0EA 2W5WA 1Y7AA 4GTXA 4LRFA 4NWXA 3UO0A 3WAYA 5C66A 3T02A 3M7VA 3NKRA 3LXQA 3UN3A 1SHQA 5TJ3A 3WAXA 4CYRA 5DLTA 3UN2A 2GLQA 5IJSA 2IFYA 1KHKA 1HDHA 4GTZA 1EQJA 1E33P 1FSUA 1KHNA 3IGYB 1ALIA 3MK2A 2ZKTA 4LR2A 5LQQA 3BDFA 1KHLA 5IJQA 3A52A 1ALKA 3E2DA 1ANJA 3T00A 2W5SA 1HQAA 2W5RA 5EGHA 5L0BA 1K7HA 4TN0A 2D1GA 3BDGA 3ED4A 5LRNA 1ED9A 1ELXA 1KH7A 1URBA 3DYCA 1ZEDA 4B56A 1ALHA 5DLWA 1O99A 1O98A 1EW9A 4FDJA 1ZEFA 2W5VA 4UPKA 3BDGB 3Q3QA 4KAVA 1KHJA 3IDDA 4UOPA 3TX0A 5GRRA 1N2LA 5INHA 3TWZA 4YR1A 2RH6A 3SZZA 1URAA 3M8WA 1AUKA 2ANHA 1SHNA 2GA3A 2W8DA 4LQYA 4LRAA 2IUCB 5GOVA 1Y6VA 1HJKA 3NKOA 1E3CP 3NKQA 3UN5A 3NKPA 2VQRA 4GTYA 3SZYA 2IUCA 2G9YA 1B8JA 2GSOA 4LR7A 2GSNA 3B5QA 3M8ZA 2X98A 2XRGA 4CXUA 4FDIA 3MK0A 3TG0A 4LR9A 1E2SP 5EGEA 5KXAA 3WAWA 4MHXA 2W5QA 1KH5A 1AJDA 3UNYA 5LIAA 3NVLA 1AJAA 5DLVA 1AJCA 1ELZA 5L0KA 3OT9A 5K4PA 4LREA 4UORA 4KJDA 5AJ9A 4LRBA 2GSUA 1ANIA 3DPCA 4GTWA 4UPHA 4KAYA 3M8YA 4LR8A 4LRDA 4CYSA 4ZG9A 3NKMA 4NWJA 4UOOA 4CXKA 1KH9A 4LRCA 2QZUA 1KH4A 1AJBA 3CMRA 4MIVA 1ELYA 3MK1A 1EW8A 1EW2A 1EJJA 4N7TA 4ZG6A 3T01A 5HRTA 4KM4A 1E1ZP 3KD8A 4UPLA 2W5XA 5LRMA 1ED8A 1N2KA 1ZEBA 3WAVA 4ZGAA 2XR9A 2W5TA 4MY4A
chains in the Genus database with same CATH superfamily
3NKNA 1ALJA 1P49A 3WBHA 1EI6A 2W8SA 3IGZB 4KJGA 3BDHA 4QAXA 4ZG7A 4UPIA 4CXSA 5L0EA 2W5WA 1Y7AA 4GTXA 4LRFA 4NWXA 3UO0A 3WAYA 5C66A 3T02A 3M7VA 3NKRA 3LXQA 3UN3A 1SHQA 5TJ3A 3WAXA 4CYRA 5DLTA 3UN2A 2GLQA 5IJSA 2IFYA 1KHKA 1HDHA 4GTZA 1EQJA 1E33P 1FSUA 1KHNA 3IGYB 1ALIA 3MK2A 2ZKTA 4LR2A 5LQQA 3BDFA 1KHLA 5IJQA 3A52A 1ALKA 3E2DA 1ANJA 3T00A 2W5SA 1HQAA 2W5RA 5EGHA 5L0BA 1K7HA 4TN0A 2D1GA 3BDGA 3ED4A 5LRNA 1ED9A 1ELXA 1KH7A 1URBA 3DYCA 1ZEDA 4B56A 1ALHA 5DLWA 1O99A 1O98A 1EW9A 4FDJA 1ZEFA 2W5VA 4UPKA 3BDGB 3Q3QA 4KAVA 1KHJA 3IDDA 4UOPA 3TX0A 5GRRA 1N2LA 5INHA 3TWZA 4YR1A 2RH6A 3SZZA 1URAA 3M8WA 1AUKA 2ANHA 1SHNA 2GA3A 2W8DA 4LQYA 4LRAA 2IUCB 5GOVA 1Y6VA 1HJKA 3NKOA 1E3CP 3NKQA 3UN5A 3NKPA 2VQRA 4GTYA 3SZYA 2IUCA 2G9YA 1B8JA 2GSOA 4LR7A 2GSNA 3B5QA 3M8ZA 2X98A 2XRGA 4CXUA 4FDIA 3MK0A 3TG0A 4LR9A 1E2SP 5EGEA 5KXAA 3WAWA 4MHXA 2W5QA 1KH5A 1AJDA 3UNYA 5LIAA 3NVLA 1AJAA 5DLVA 1AJCA 1ELZA 5L0KA 3OT9A 5K4PA 4LREA 4UORA 4KJDA 5AJ9A 4LRBA 2GSUA 1ANIA 3DPCA 4GTWA 4UPHA 4KAYA 3M8YA 4LR8A 4LRDA 4CYSA 4ZG9A 3NKMA 4NWJA 4UOOA 4CXKA 1KH9A 4LRCA 2QZUA 1KH4A 1AJBA 3CMRA 4MIVA 1ELYA 3MK1A 1EW8A 1EW2A 1EJJA 4N7TA 4ZG6A 3T01A 5HRTA 4KM4A 1E1ZP 3KD8A 4UPLA 2W5XA 5LRMA 1ED8A 1N2KA 1ZEBA 3WAVA 4ZGAA 2XR9A 2W5TA 4MY4A
chains in the Genus database with same CATH topology
3NKNA 1ALJA 1P49A 3WBHA 1EI6A 2W8SA 3IGZB 4KJGA 3BDHA 4QAXA 4ZG7A 4UPIA 4CXSA 5L0EA 2W5WA 1Y7AA 4GTXA 4LRFA 4NWXA 3UO0A 3WAYA 5C66A 3T02A 3M7VA 3NKRA 3LXQA 3UN3A 1SHQA 5TJ3A 3WAXA 4CYRA 5DLTA 3UN2A 2GLQA 5IJSA 2IFYA 1KHKA 1HDHA 4GTZA 1EQJA 1E33P 1FSUA 1KHNA 3IGYB 1ALIA 3MK2A 2ZKTA 4LR2A 5LQQA 3BDFA 1KHLA 5IJQA 3A52A 1ALKA 3E2DA 1ANJA 3T00A 2W5SA 1HQAA 2W5RA 5EGHA 5L0BA 1K7HA 4TN0A 2D1GA 3BDGA 3ED4A 5LRNA 1ED9A 1ELXA 1KH7A 1URBA 3DYCA 1ZEDA 4B56A 1ALHA 5DLWA 1O99A 1O98A 1EW9A 4FDJA 1ZEFA 2W5VA 4UPKA 3BDGB 3Q3QA 4KAVA 1KHJA 3IDDA 4UOPA 3TX0A 5GRRA 1N2LA 5INHA 3TWZA 4YR1A 2RH6A 3SZZA 1URAA 3M8WA 1AUKA 2ANHA 1SHNA 2GA3A 2W8DA 4LQYA 4LRAA 2IUCB 5GOVA 1Y6VA 1HJKA 3NKOA 1E3CP 3NKQA 3UN5A 3NKPA 2VQRA 4GTYA 3SZYA 2IUCA 2G9YA 1B8JA 2GSOA 4LR7A 2GSNA 3B5QA 3M8ZA 2X98A 2XRGA 4CXUA 4FDIA 3MK0A 3TG0A 4LR9A 1E2SP 5EGEA 5KXAA 3WAWA 4MHXA 2W5QA 1KH5A 1AJDA 3UNYA 5LIAA 3NVLA 1AJAA 5DLVA 1AJCA 1ELZA 5L0KA 3OT9A 5K4PA 4LREA 4UORA 4KJDA 5AJ9A 4LRBA 2GSUA 1ANIA 3DPCA 4GTWA 4UPHA 4KAYA 3M8YA 4LR8A 4LRDA 4CYSA 4ZG9A 3NKMA 4NWJA 4UOOA 4CXKA 1KH9A 4LRCA 2QZUA 1KH4A 1AJBA 3CMRA 4MIVA 1ELYA 3MK1A 1EW8A 1EW2A 1EJJA 4N7TA 4ZG6A 3T01A 5HRTA 4KM4A 1E1ZP 3KD8A 4UPLA 2W5XA 5LRMA 1ED8A 1N2KA 1ZEBA 3WAVA 4ZGAA 2XR9A 2W5TA 4MY4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NKN A;  1ALJ A;  1P49 A;  3WBH A;  1EI6 A;  2W8S A;  3IGZ B;  4KJG A;  3BDH A;  4QAX A;  4ZG7 A;  4UPI A;  4CXS A;  5L0E A;  2W5W A;  1Y7A A;  4GTX A;  4LRF A;  4NWX A;  3UO0 A;  3WAY A;  5C66 A;  3T02 A;  3M7V A;  3NKR A;  3LXQ A;  3UN3 A;  1SHQ A;  5TJ3 A;  3WAX A;  4CYR A;  5DLT A;  3UN2 A;  2GLQ A;  5IJS A;  2IFY A;  1KHK A;  1HDH A;  4GTZ A;  1EQJ A;  1E33 P;  1FSU A;  1KHN A;  3IGY B;  1ALI A;  3MK2 A;  2ZKT A;  4LR2 A;  5LQQ A;  3BDF A;  1KHL A;  5IJQ A;  3A52 A;  1ALK A;  3E2D A;  1ANJ A;  3T00 A;  2W5S A;  1HQA A;  2W5R A;  5EGH A;  5L0B A;  1K7H A;  4TN0 A;  2D1G A;  3BDG A;  3ED4 A;  5LRN A;  1ED9 A;  1ELX A;  1KH7 A;  1URB A;  3DYC A;  1ZED A;  4B56 A;  1ALH A;  5DLW A;  1O99 A;  1O98 A;  1EW9 A;  4FDJ A;  1ZEF A;  2W5V A;  4UPK A;  3BDG B;  3Q3Q A;  4KAV A;  1KHJ A;  3IDD A;  4UOP A;  3TX0 A;  5GRR A;  1N2L A;  5INH A;  3TWZ A;  4YR1 A;  2RH6 A;  3SZZ A;  1URA A;  3M8W A;  1AUK A;  2ANH A;  1SHN A;  2GA3 A;  2W8D A;  4LQY A;  4LRA A;  2IUC B;  5GOV A;  1Y6V A;  1HJK A;  3NKO A;  1E3C P;  3NKQ A;  3UN5 A;  3NKP A;  2VQR A;  4GTY A;  3SZY A;  2IUC A;  2G9Y A;  1B8J A;  2GSO A;  4LR7 A;  2GSN A;  3B5Q A;  3M8Z A;  2X98 A;  2XRG A;  4CXU A;  4FDI A;  3MK0 A;  3TG0 A;  4LR9 A;  1E2S P;  5EGE A;  5KXA A;  3WAW A;  4MHX A;  2W5Q A;  1KH5 A;  1AJD A;  3UNY A;  5LIA A;  3NVL A;  1AJA A;  5DLV A;  1AJC A;  1ELZ A;  5L0K A;  3OT9 A;  5K4P A;  4LRE A;  4UOR A;  4KJD A;  5AJ9 A;  4LRB A;  2GSU A;  1ANI A;  3DPC A;  4GTW A;  4UPH A;  4KAY A;  3M8Y A;  4LR8 A;  4LRD A;  4CYS A;  4ZG9 A;  3NKM A;  4NWJ A;  4UOO A;  4CXK A;  1KH9 A;  4LRC A;  2QZU A;  1KH4 A;  1AJB A;  3CMR A;  4MIV A;  1ELY A;  3MK1 A;  1EW8 A;  1EW2 A;  1EJJ A;  4N7T A;  4ZG6 A;  3T01 A;  5HRT A;  4KM4 A;  1E1Z P;  3KD8 A;  4UPL A;  2W5X A;  5LRM A;  1ED8 A;  1N2K A;  1ZEB A;  3WAV A;  4ZGA A;  2XR9 A;  2W5T A;  4MY4 A; 
#chains in the Genus database with same CATH topology
 3NKN A;  1ALJ A;  1P49 A;  3WBH A;  1EI6 A;  2W8S A;  3IGZ B;  4KJG A;  3BDH A;  4QAX A;  4ZG7 A;  4UPI A;  4CXS A;  5L0E A;  2W5W A;  1Y7A A;  4GTX A;  4LRF A;  4NWX A;  3UO0 A;  3WAY A;  5C66 A;  3T02 A;  3M7V A;  3NKR A;  3LXQ A;  3UN3 A;  1SHQ A;  5TJ3 A;  3WAX A;  4CYR A;  5DLT A;  3UN2 A;  2GLQ A;  5IJS A;  2IFY A;  1KHK A;  1HDH A;  4GTZ A;  1EQJ A;  1E33 P;  1FSU A;  1KHN A;  3IGY B;  1ALI A;  3MK2 A;  2ZKT A;  4LR2 A;  5LQQ A;  3BDF A;  1KHL A;  5IJQ A;  3A52 A;  1ALK A;  3E2D A;  1ANJ A;  3T00 A;  2W5S A;  1HQA A;  2W5R A;  5EGH A;  5L0B A;  1K7H A;  4TN0 A;  2D1G A;  3BDG A;  3ED4 A;  5LRN A;  1ED9 A;  1ELX A;  1KH7 A;  1URB A;  3DYC A;  1ZED A;  4B56 A;  1ALH A;  5DLW A;  1O99 A;  1O98 A;  1EW9 A;  4FDJ A;  1ZEF A;  2W5V A;  4UPK A;  3BDG B;  3Q3Q A;  4KAV A;  1KHJ A;  3IDD A;  4UOP A;  3TX0 A;  5GRR A;  1N2L A;  5INH A;  3TWZ A;  4YR1 A;  2RH6 A;  3SZZ A;  1URA A;  3M8W A;  1AUK A;  2ANH A;  1SHN A;  2GA3 A;  2W8D A;  4LQY A;  4LRA A;  2IUC B;  5GOV A;  1Y6V A;  1HJK A;  3NKO A;  1E3C P;  3NKQ A;  3UN5 A;  3NKP A;  2VQR A;  4GTY A;  3SZY A;  2IUC A;  2G9Y A;  1B8J A;  2GSO A;  4LR7 A;  2GSN A;  3B5Q A;  3M8Z A;  2X98 A;  2XRG A;  4CXU A;  4FDI A;  3MK0 A;  3TG0 A;  4LR9 A;  1E2S P;  5EGE A;  5KXA A;  3WAW A;  4MHX A;  2W5Q A;  1KH5 A;  1AJD A;  3UNY A;  5LIA A;  3NVL A;  1AJA A;  5DLV A;  1AJC A;  1ELZ A;  5L0K A;  3OT9 A;  5K4P A;  4LRE A;  4UOR A;  4KJD A;  5AJ9 A;  4LRB A;  2GSU A;  1ANI A;  3DPC A;  4GTW A;  4UPH A;  4KAY A;  3M8Y A;  4LR8 A;  4LRD A;  4CYS A;  4ZG9 A;  3NKM A;  4NWJ A;  4UOO A;  4CXK A;  1KH9 A;  4LRC A;  2QZU A;  1KH4 A;  1AJB A;  3CMR A;  4MIV A;  1ELY A;  3MK1 A;  1EW8 A;  1EW2 A;  1EJJ A;  4N7T A;  4ZG6 A;  3T01 A;  5HRT A;  4KM4 A;  1E1Z P;  3KD8 A;  4UPL A;  2W5X A;  5LRM A;  1ED8 A;  1N2K A;  1ZEB A;  3WAV A;  4ZGA A;  2XR9 A;  2W5T A;  4MY4 A; 
#chains in the Genus database with same CATH homology
 3NKN A;  1ALJ A;  1P49 A;  3WBH A;  1EI6 A;  2W8S A;  3IGZ B;  4KJG A;  3BDH A;  4QAX A;  4ZG7 A;  4UPI A;  4CXS A;  5L0E A;  2W5W A;  1Y7A A;  4GTX A;  4LRF A;  4NWX A;  3UO0 A;  3WAY A;  5C66 A;  3T02 A;  3M7V A;  3NKR A;  3LXQ A;  3UN3 A;  1SHQ A;  5TJ3 A;  3WAX A;  4CYR A;  5DLT A;  3UN2 A;  2GLQ A;  5IJS A;  2IFY A;  1KHK A;  1HDH A;  4GTZ A;  1EQJ A;  1E33 P;  1FSU A;  1KHN A;  3IGY B;  1ALI A;  3MK2 A;  2ZKT A;  4LR2 A;  5LQQ A;  3BDF A;  1KHL A;  5IJQ A;  3A52 A;  1ALK A;  3E2D A;  1ANJ A;  3T00 A;  2W5S A;  1HQA A;  2W5R A;  5EGH A;  5L0B A;  1K7H A;  4TN0 A;  2D1G A;  3BDG A;  3ED4 A;  5LRN A;  1ED9 A;  1ELX A;  1KH7 A;  1URB A;  3DYC A;  1ZED A;  4B56 A;  1ALH A;  5DLW A;  1O99 A;  1O98 A;  1EW9 A;  4FDJ A;  1ZEF A;  2W5V A;  4UPK A;  3BDG B;  3Q3Q A;  4KAV A;  1KHJ A;  3IDD A;  4UOP A;  3TX0 A;  5GRR A;  1N2L A;  5INH A;  3TWZ A;  4YR1 A;  2RH6 A;  3SZZ A;  1URA A;  3M8W A;  1AUK A;  2ANH A;  1SHN A;  2GA3 A;  2W8D A;  4LQY A;  4LRA A;  2IUC B;  5GOV A;  1Y6V A;  1HJK A;  3NKO A;  1E3C P;  3NKQ A;  3UN5 A;  3NKP A;  2VQR A;  4GTY A;  3SZY A;  2IUC A;  2G9Y A;  1B8J A;  2GSO A;  4LR7 A;  2GSN A;  3B5Q A;  3M8Z A;  2X98 A;  2XRG A;  4CXU A;  4FDI A;  3MK0 A;  3TG0 A;  4LR9 A;  1E2S P;  5EGE A;  5KXA A;  3WAW A;  4MHX A;  2W5Q A;  1KH5 A;  1AJD A;  3UNY A;  5LIA A;  3NVL A;  1AJA A;  5DLV A;  1AJC A;  1ELZ A;  5L0K A;  3OT9 A;  5K4P A;  4LRE A;  4UOR A;  4KJD A;  5AJ9 A;  4LRB A;  2GSU A;  1ANI A;  3DPC A;  4GTW A;  4UPH A;  4KAY A;  3M8Y A;  4LR8 A;  4LRD A;  4CYS A;  4ZG9 A;  3NKM A;  4NWJ A;  4UOO A;  4CXK A;  1KH9 A;  4LRC A;  2QZU A;  1KH4 A;  1AJB A;  3CMR A;  4MIV A;  1ELY A;  3MK1 A;  1EW8 A;  1EW2 A;  1EJJ A;  4N7T A;  4ZG6 A;  3T01 A;  5HRT A;  4KM4 A;  1E1Z P;  3KD8 A;  4UPL A;  2W5X A;  5LRM A;  1ED8 A;  1N2K A;  1ZEB A;  3WAV A;  4ZGA A;  2XR9 A;  2W5T A;  4MY4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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