2W5SA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
total genus 163
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5sA02
1KHLA 4UPIA 1E33P 5L0EA 4GTYA 2GSUA 3UN5A 1E1ZP 2W5TA 1ALHA 1EI6A 2W5SA 4UORA 4LREA 3Q3QA 5LQQA 5HRTA 5LRMA 4UPKA 3UN3A 1Y7AA 4GTWA 5K4PA 1HDHA 2W5XA 2GA3A 4FDJA 3UO0A 1SHNA 1AUKA 4MHXA 3BDGB 3M7VA 3CMRA 4MIVA 2W8SA 3M8ZA 1ALKA 4CXSA 1ZEBA 1AJAA 3TWZA 1KHNA 1ZEFA 4UPLA 3MK0A 3T01A 4ZG7A 4QAXA 1ANIA 3UN2A 1AJBA 4CYRA 3WAVA 1ELZA 2G9YA 2ANHA 3WBHA 3NVLA 2X98A 3E2DA 3BDHA 4GTXA 4ZG9A 1N2KA 1FSUA 4KJDA 1KH5A 4UOPA 1B8JA 4LRFA 1ED8A 3LXQA 1URAA 2QZUA 3KD8A 1HJKA 3IGZB 1AJCA 1KHKA 1KH4A 4N7TA 3B5QA 5AJ9A 1ED9A 1P49A 2IUCA 5IJSA 4KAYA 4NWXA 3BDGA 1KHJA 4GTZA 1KH9A 4CXKA 5LRNA 3ED4A 3NKOA 4NWJA 1EW2A 2VQRA 5DLTA 2W8DA 5GOVA 2ZKTA 1N2LA 4KM4A 4LR7A 4FDIA 1ALJA 4MY4A 3MK1A 5L0BA 3NKNA 3TX0A 4CXUA 1EJJA 2D1GA 4LQYA 4LR9A 4KJGA 4ZG6A 4B56A 3OT9A 5L0KA 1URBA 1KH7A 4LRDA 1ELYA 1AJDA 1EW8A 4CYSA 3WAXA 1ELXA 3A52A 2IUCB 3NKQA 4UPHA 3BDFA 1EW9A 4LR8A 4LR2A 5IJQA 1E3CP 5LIAA 1ZEDA 4LRCA 5DLWA 3M8YA 1ALIA 2GSOA 1EQJA 3TG0A 5EGHA 3NKRA 4YR1A 3IDDA 4KAVA 5INHA 4UOOA 5DLVA 3IGYB 1E2SP 4ZGAA 3SZZA 3UNYA 5KXAA 3SZYA 2W5QA 2GSNA 4TN0A 5C66A 1Y6VA 2W5RA 2XR9A 3MK2A 3T02A 1SHQA 2GLQA 1ANJA 2RH6A 1O99A 3DYCA 3M8WA 3NKPA 3DPCA 2IFYA 4LRBA 3WAYA 2W5VA 5GRRA 5TJ3A 2W5WA 3WAWA 1K7HA 2XRGA 3NKMA 1O98A 5EGEA 3T00A 4LRAA 1HQAA
chains in the Genus database with same CATH superfamily
1KHLA 4UPIA 1E33P 5L0EA 4GTYA 2GSUA 3UN5A 1E1ZP 2W5TA 1ALHA 1EI6A 2W5SA 4UORA 4LREA 3Q3QA 5LQQA 5HRTA 5LRMA 4UPKA 3UN3A 1Y7AA 4GTWA 5K4PA 1HDHA 2W5XA 2GA3A 4FDJA 3UO0A 1SHNA 1AUKA 4MHXA 3BDGB 3M7VA 3CMRA 4MIVA 2W8SA 3M8ZA 1ALKA 4CXSA 1ZEBA 1AJAA 3TWZA 1KHNA 1ZEFA 4UPLA 3MK0A 3T01A 4ZG7A 4QAXA 1ANIA 3UN2A 1AJBA 4CYRA 3WAVA 1ELZA 2G9YA 2ANHA 3WBHA 3NVLA 2X98A 3E2DA 3BDHA 4GTXA 4ZG9A 1N2KA 1FSUA 4KJDA 1KH5A 4UOPA 1B8JA 4LRFA 1ED8A 3LXQA 1URAA 2QZUA 3KD8A 1HJKA 3IGZB 1AJCA 1KHKA 1KH4A 4N7TA 3B5QA 5AJ9A 1ED9A 1P49A 2IUCA 5IJSA 4KAYA 4NWXA 3BDGA 1KHJA 4GTZA 1KH9A 4CXKA 5LRNA 3ED4A 3NKOA 4NWJA 1EW2A 2VQRA 5DLTA 2W8DA 5GOVA 2ZKTA 1N2LA 4KM4A 4LR7A 4FDIA 1ALJA 4MY4A 3MK1A 5L0BA 3NKNA 3TX0A 4CXUA 1EJJA 2D1GA 4LQYA 4LR9A 4KJGA 4ZG6A 4B56A 3OT9A 5L0KA 1URBA 1KH7A 4LRDA 1ELYA 1AJDA 1EW8A 4CYSA 3WAXA 1ELXA 3A52A 2IUCB 3NKQA 4UPHA 3BDFA 1EW9A 4LR8A 4LR2A 5IJQA 1E3CP 5LIAA 1ZEDA 4LRCA 5DLWA 3M8YA 1ALIA 2GSOA 1EQJA 3TG0A 5EGHA 3NKRA 4YR1A 3IDDA 4KAVA 5INHA 4UOOA 5DLVA 3IGYB 1E2SP 4ZGAA 3SZZA 3UNYA 5KXAA 3SZYA 2W5QA 2GSNA 4TN0A 5C66A 1Y6VA 2W5RA 2XR9A 3MK2A 3T02A 1SHQA 2GLQA 1ANJA 2RH6A 1O99A 3DYCA 3M8WA 3NKPA 3DPCA 2IFYA 4LRBA 3WAYA 2W5VA 5GRRA 5TJ3A 2W5WA 3WAWA 1K7HA 2XRGA 3NKMA 1O98A 5EGEA 3T00A 4LRAA 1HQAA
chains in the Genus database with same CATH topology
1KHLA 4UPIA 1E33P 5L0EA 4GTYA 2GSUA 3UN5A 1E1ZP 2W5TA 1ALHA 1EI6A 2W5SA 4UORA 4LREA 3Q3QA 5LQQA 5HRTA 5LRMA 4UPKA 3UN3A 1Y7AA 4GTWA 5K4PA 1HDHA 2W5XA 2GA3A 4FDJA 3UO0A 1SHNA 1AUKA 4MHXA 3BDGB 3M7VA 3CMRA 4MIVA 2W8SA 3M8ZA 1ALKA 4CXSA 1ZEBA 1AJAA 3TWZA 1KHNA 1ZEFA 4UPLA 3MK0A 3T01A 4ZG7A 4QAXA 1ANIA 3UN2A 1AJBA 4CYRA 3WAVA 1ELZA 2G9YA 2ANHA 3WBHA 3NVLA 2X98A 3E2DA 3BDHA 4GTXA 4ZG9A 1N2KA 1FSUA 4KJDA 1KH5A 4UOPA 1B8JA 4LRFA 1ED8A 3LXQA 1URAA 2QZUA 3KD8A 1HJKA 3IGZB 1AJCA 1KHKA 1KH4A 4N7TA 3B5QA 5AJ9A 1ED9A 1P49A 2IUCA 5IJSA 4KAYA 4NWXA 3BDGA 1KHJA 4GTZA 1KH9A 4CXKA 5LRNA 3ED4A 3NKOA 4NWJA 1EW2A 2VQRA 5DLTA 2W8DA 5GOVA 2ZKTA 1N2LA 4KM4A 4LR7A 4FDIA 1ALJA 4MY4A 3MK1A 5L0BA 3NKNA 3TX0A 4CXUA 1EJJA 2D1GA 4LQYA 4LR9A 4KJGA 4ZG6A 4B56A 3OT9A 5L0KA 1URBA 1KH7A 4LRDA 1ELYA 1AJDA 1EW8A 4CYSA 3WAXA 1ELXA 3A52A 2IUCB 3NKQA 4UPHA 3BDFA 1EW9A 4LR8A 4LR2A 5IJQA 1E3CP 5LIAA 1ZEDA 4LRCA 5DLWA 3M8YA 1ALIA 2GSOA 1EQJA 3TG0A 5EGHA 3NKRA 4YR1A 3IDDA 4KAVA 5INHA 4UOOA 5DLVA 3IGYB 1E2SP 4ZGAA 3SZZA 3UNYA 5KXAA 3SZYA 2W5QA 2GSNA 4TN0A 5C66A 1Y6VA 2W5RA 2XR9A 3MK2A 3T02A 1SHQA 2GLQA 1ANJA 2RH6A 1O99A 3DYCA 3M8WA 3NKPA 3DPCA 2IFYA 4LRBA 3WAYA 2W5VA 5GRRA 5TJ3A 2W5WA 3WAWA 1K7HA 2XRGA 3NKMA 1O98A 5EGEA 3T00A 4LRAA 1HQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KHL A;  4UPI A;  1E33 P;  5L0E A;  4GTY A;  2GSU A;  3UN5 A;  1E1Z P;  2W5T A;  1ALH A;  1EI6 A;  2W5S A;  4UOR A;  4LRE A;  3Q3Q A;  5LQQ A;  5HRT A;  5LRM A;  4UPK A;  3UN3 A;  1Y7A A;  4GTW A;  5K4P A;  1HDH A;  2W5X A;  2GA3 A;  4FDJ A;  3UO0 A;  1SHN A;  1AUK A;  4MHX A;  3BDG B;  3M7V A;  3CMR A;  4MIV A;  2W8S A;  3M8Z A;  1ALK A;  4CXS A;  1ZEB A;  1AJA A;  3TWZ A;  1KHN A;  1ZEF A;  4UPL A;  3MK0 A;  3T01 A;  4ZG7 A;  4QAX A;  1ANI A;  3UN2 A;  1AJB A;  4CYR A;  3WAV A;  1ELZ A;  2G9Y A;  2ANH A;  3WBH A;  3NVL A;  2X98 A;  3E2D A;  3BDH A;  4GTX A;  4ZG9 A;  1N2K A;  1FSU A;  4KJD A;  1KH5 A;  4UOP A;  1B8J A;  4LRF A;  1ED8 A;  3LXQ A;  1URA A;  2QZU A;  3KD8 A;  1HJK A;  3IGZ B;  1AJC A;  1KHK A;  1KH4 A;  4N7T A;  3B5Q A;  5AJ9 A;  1ED9 A;  1P49 A;  2IUC A;  5IJS A;  4KAY A;  4NWX A;  3BDG A;  1KHJ A;  4GTZ A;  1KH9 A;  4CXK A;  5LRN A;  3ED4 A;  3NKO A;  4NWJ A;  1EW2 A;  2VQR A;  5DLT A;  2W8D A;  5GOV A;  2ZKT A;  1N2L A;  4KM4 A;  4LR7 A;  4FDI A;  1ALJ A;  4MY4 A;  3MK1 A;  5L0B A;  3NKN A;  3TX0 A;  4CXU A;  1EJJ A;  2D1G A;  4LQY A;  4LR9 A;  4KJG A;  4ZG6 A;  4B56 A;  3OT9 A;  5L0K A;  1URB A;  1KH7 A;  4LRD A;  1ELY A;  1AJD A;  1EW8 A;  4CYS A;  3WAX A;  1ELX A;  3A52 A;  2IUC B;  3NKQ A;  4UPH A;  3BDF A;  1EW9 A;  4LR8 A;  4LR2 A;  5IJQ A;  1E3C P;  5LIA A;  1ZED A;  4LRC A;  5DLW A;  3M8Y A;  1ALI A;  2GSO A;  1EQJ A;  3TG0 A;  5EGH A;  3NKR A;  4YR1 A;  3IDD A;  4KAV A;  5INH A;  4UOO A;  5DLV A;  3IGY B;  1E2S P;  4ZGA A;  3SZZ A;  3UNY A;  5KXA A;  3SZY A;  2W5Q A;  2GSN A;  4TN0 A;  5C66 A;  1Y6V A;  2W5R A;  2XR9 A;  3MK2 A;  3T02 A;  1SHQ A;  2GLQ A;  1ANJ A;  2RH6 A;  1O99 A;  3DYC A;  3M8W A;  3NKP A;  3DPC A;  2IFY A;  4LRB A;  3WAY A;  2W5V A;  5GRR A;  5TJ3 A;  2W5W A;  3WAW A;  1K7H A;  2XRG A;  3NKM A;  1O98 A;  5EGE A;  3T00 A;  4LRA A;  1HQA A; 
#chains in the Genus database with same CATH topology
 1KHL A;  4UPI A;  1E33 P;  5L0E A;  4GTY A;  2GSU A;  3UN5 A;  1E1Z P;  2W5T A;  1ALH A;  1EI6 A;  2W5S A;  4UOR A;  4LRE A;  3Q3Q A;  5LQQ A;  5HRT A;  5LRM A;  4UPK A;  3UN3 A;  1Y7A A;  4GTW A;  5K4P A;  1HDH A;  2W5X A;  2GA3 A;  4FDJ A;  3UO0 A;  1SHN A;  1AUK A;  4MHX A;  3BDG B;  3M7V A;  3CMR A;  4MIV A;  2W8S A;  3M8Z A;  1ALK A;  4CXS A;  1ZEB A;  1AJA A;  3TWZ A;  1KHN A;  1ZEF A;  4UPL A;  3MK0 A;  3T01 A;  4ZG7 A;  4QAX A;  1ANI A;  3UN2 A;  1AJB A;  4CYR A;  3WAV A;  1ELZ A;  2G9Y A;  2ANH A;  3WBH A;  3NVL A;  2X98 A;  3E2D A;  3BDH A;  4GTX A;  4ZG9 A;  1N2K A;  1FSU A;  4KJD A;  1KH5 A;  4UOP A;  1B8J A;  4LRF A;  1ED8 A;  3LXQ A;  1URA A;  2QZU A;  3KD8 A;  1HJK A;  3IGZ B;  1AJC A;  1KHK A;  1KH4 A;  4N7T A;  3B5Q A;  5AJ9 A;  1ED9 A;  1P49 A;  2IUC A;  5IJS A;  4KAY A;  4NWX A;  3BDG A;  1KHJ A;  4GTZ A;  1KH9 A;  4CXK A;  5LRN A;  3ED4 A;  3NKO A;  4NWJ A;  1EW2 A;  2VQR A;  5DLT A;  2W8D A;  5GOV A;  2ZKT A;  1N2L A;  4KM4 A;  4LR7 A;  4FDI A;  1ALJ A;  4MY4 A;  3MK1 A;  5L0B A;  3NKN A;  3TX0 A;  4CXU A;  1EJJ A;  2D1G A;  4LQY A;  4LR9 A;  4KJG A;  4ZG6 A;  4B56 A;  3OT9 A;  5L0K A;  1URB A;  1KH7 A;  4LRD A;  1ELY A;  1AJD A;  1EW8 A;  4CYS A;  3WAX A;  1ELX A;  3A52 A;  2IUC B;  3NKQ A;  4UPH A;  3BDF A;  1EW9 A;  4LR8 A;  4LR2 A;  5IJQ A;  1E3C P;  5LIA A;  1ZED A;  4LRC A;  5DLW A;  3M8Y A;  1ALI A;  2GSO A;  1EQJ A;  3TG0 A;  5EGH A;  3NKR A;  4YR1 A;  3IDD A;  4KAV A;  5INH A;  4UOO A;  5DLV A;  3IGY B;  1E2S P;  4ZGA A;  3SZZ A;  3UNY A;  5KXA A;  3SZY A;  2W5Q A;  2GSN A;  4TN0 A;  5C66 A;  1Y6V A;  2W5R A;  2XR9 A;  3MK2 A;  3T02 A;  1SHQ A;  2GLQ A;  1ANJ A;  2RH6 A;  1O99 A;  3DYC A;  3M8W A;  3NKP A;  3DPC A;  2IFY A;  4LRB A;  3WAY A;  2W5V A;  5GRR A;  5TJ3 A;  2W5W A;  3WAW A;  1K7H A;  2XRG A;  3NKM A;  1O98 A;  5EGE A;  3T00 A;  4LRA A;  1HQA A; 
#chains in the Genus database with same CATH homology
 1KHL A;  4UPI A;  1E33 P;  5L0E A;  4GTY A;  2GSU A;  3UN5 A;  1E1Z P;  2W5T A;  1ALH A;  1EI6 A;  2W5S A;  4UOR A;  4LRE A;  3Q3Q A;  5LQQ A;  5HRT A;  5LRM A;  4UPK A;  3UN3 A;  1Y7A A;  4GTW A;  5K4P A;  1HDH A;  2W5X A;  2GA3 A;  4FDJ A;  3UO0 A;  1SHN A;  1AUK A;  4MHX A;  3BDG B;  3M7V A;  3CMR A;  4MIV A;  2W8S A;  3M8Z A;  1ALK A;  4CXS A;  1ZEB A;  1AJA A;  3TWZ A;  1KHN A;  1ZEF A;  4UPL A;  3MK0 A;  3T01 A;  4ZG7 A;  4QAX A;  1ANI A;  3UN2 A;  1AJB A;  4CYR A;  3WAV A;  1ELZ A;  2G9Y A;  2ANH A;  3WBH A;  3NVL A;  2X98 A;  3E2D A;  3BDH A;  4GTX A;  4ZG9 A;  1N2K A;  1FSU A;  4KJD A;  1KH5 A;  4UOP A;  1B8J A;  4LRF A;  1ED8 A;  3LXQ A;  1URA A;  2QZU A;  3KD8 A;  1HJK A;  3IGZ B;  1AJC A;  1KHK A;  1KH4 A;  4N7T A;  3B5Q A;  5AJ9 A;  1ED9 A;  1P49 A;  2IUC A;  5IJS A;  4KAY A;  4NWX A;  3BDG A;  1KHJ A;  4GTZ A;  1KH9 A;  4CXK A;  5LRN A;  3ED4 A;  3NKO A;  4NWJ A;  1EW2 A;  2VQR A;  5DLT A;  2W8D A;  5GOV A;  2ZKT A;  1N2L A;  4KM4 A;  4LR7 A;  4FDI A;  1ALJ A;  4MY4 A;  3MK1 A;  5L0B A;  3NKN A;  3TX0 A;  4CXU A;  1EJJ A;  2D1G A;  4LQY A;  4LR9 A;  4KJG A;  4ZG6 A;  4B56 A;  3OT9 A;  5L0K A;  1URB A;  1KH7 A;  4LRD A;  1ELY A;  1AJD A;  1EW8 A;  4CYS A;  3WAX A;  1ELX A;  3A52 A;  2IUC B;  3NKQ A;  4UPH A;  3BDF A;  1EW9 A;  4LR8 A;  4LR2 A;  5IJQ A;  1E3C P;  5LIA A;  1ZED A;  4LRC A;  5DLW A;  3M8Y A;  1ALI A;  2GSO A;  1EQJ A;  3TG0 A;  5EGH A;  3NKR A;  4YR1 A;  3IDD A;  4KAV A;  5INH A;  4UOO A;  5DLV A;  3IGY B;  1E2S P;  4ZGA A;  3SZZ A;  3UNY A;  5KXA A;  3SZY A;  2W5Q A;  2GSN A;  4TN0 A;  5C66 A;  1Y6V A;  2W5R A;  2XR9 A;  3MK2 A;  3T02 A;  1SHQ A;  2GLQ A;  1ANJ A;  2RH6 A;  1O99 A;  3DYC A;  3M8W A;  3NKP A;  3DPC A;  2IFY A;  4LRB A;  3WAY A;  2W5V A;  5GRR A;  5TJ3 A;  2W5W A;  3WAW A;  1K7H A;  2XRG A;  3NKM A;  1O98 A;  5EGE A;  3T00 A;  4LRA A;  1HQA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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