2W5YA

Binary complex of the mixed lineage leukaemia (mll1) set domain with the cofactor product s-adenosylhomocysteine.
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
177
structure length
170
Chain Sequence
PNDEEEEEVQLKSARRATSMDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFKLPCNCGAKKCRKFLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords HISTONE-LYSINE N-METHYLTRANSFERASE HRX
publication title Structural Basis for the Requirement of Additional Factors for Mll1 Set Domain Activity and Recognition of Epigenetic Marks.
pubmed doi rcsb
source organism Homo sapiens
total genus 48
structure length 170
sequence length 177
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2008-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 2w5yA01
3M59A 5EX3A 4IJ8A 5CCMA 2G46A 5LSXA 5JHNA 1PEGA 1ZKKA 3M53A 1MUFA 4I51A 4NVQA 5JIYA 4JDSA 3MEKA 3S7BA 2O8JA 5TTFA 3EP0A 3F9ZA 4YPUA 3OPEA 4WUYA 4YNPA 5KJMA 3RJWA 4J8OA 3SWCA 4J7IA 3MO2A 5HI7A 2JV0A 3M58A 3MO5A 5EG2A 3S8PA 4YPEA 4O6FA 2W5YA 5LSZA 4QEPA 2BQZA 1XQHA 3VV0A 1O9SA 3DALA 3RAYA 4C1QA 4IJDA 3F9XA 3RIBA 2IGQA 5F6LA 2F69A 4H12A 4LDGA 3QWVA 4Z4PA 2QPWA 3QWPA 4E47A 4O30A 3DB5A 2RFIA 5F5EA 5CPRB 3KMJA 3OOIA 4YNDA 3OS5A 1H3IA 3VUZA 5TH7A 3MO0A 3FPDA 4J83A 3OXLA 1N6CA 4RZ0A 3CBMA 4BUPA 2R3AA 5HQ8A 3F9WA 3QWWA 3S7FA 3PDNA 4JLGA 5KJKA 4J7FA 5F6KC 3K5KA 3HNAA 2W5ZA 5T0KA 5CCLA 4QENA 5KJNA 3KMAA 3N71A 5F59A 3RQ4A 3TG5A 4NJ5A 3CBOA 3BO5A 5AYFA 3F9YA 4MI0A 3M57A 5T0MA 5T5GA 3SW9A 3TG4A 3OXGA 3S7JA 3RU0A 1ML9A 5JINA 4MI5A 3S7DA 1MVHA 1N3JA 4QEOA 5ARFA 5KJLA 3OXFA 3M54A 3CBPA 1MT6A 3IHXA 3M56A 3KMTA 3M55A 1MVXA 3M5AA 4YNMA 5EX0A 5JJ0A 5TEGA 1N6AA 4AU7A 4YPAA 5ARGA 4FMUA
chains in the Genus database with same CATH superfamily
3M59A 5EX3A 4IJ8A 5CCMA 2G46A 5LSXA 5JHNA 1PEGA 1ZKKA 3M53A 1MUFA 4I51A 4NVQA 5JIYA 4JDSA 3MEKA 3S7BA 2O8JA 5TTFA 3EP0A 3F9ZA 4YPUA 3OPEA 4WUYA 4YNPA 5KJMA 3RJWA 4J8OA 3SWCA 4J7IA 3MO2A 5HI7A 2JV0A 3M58A 3MO5A 5EG2A 3S8PA 4YPEA 4O6FA 2W5YA 5LSZA 4QEPA 2BQZA 1XQHA 3VV0A 1O9SA 3DALA 3RAYA 4C1QA 4IJDA 3F9XA 3RIBA 2IGQA 5F6LA 2F69A 4H12A 4LDGA 3QWVA 4Z4PA 2QPWA 3QWPA 4E47A 4O30A 3DB5A 2RFIA 5F5EA 5CPRB 3KMJA 3OOIA 4YNDA 3OS5A 1H3IA 3VUZA 5TH7A 3MO0A 3FPDA 4J83A 3OXLA 1N6CA 4RZ0A 3CBMA 4BUPA 2R3AA 5HQ8A 3F9WA 3QWWA 3S7FA 3PDNA 4JLGA 5KJKA 4J7FA 5F6KC 3K5KA 3HNAA 2W5ZA 5T0KA 5CCLA 4QENA 5KJNA 3KMAA 3N71A 5F59A 3RQ4A 3TG5A 4NJ5A 3CBOA 3BO5A 5AYFA 3F9YA 4MI0A 3M57A 5T0MA 5T5GA 3SW9A 3TG4A 3OXGA 3S7JA 3RU0A 1ML9A 5JINA 4MI5A 3S7DA 1MVHA 1N3JA 4QEOA 5ARFA 5KJLA 3OXFA 3M54A 3CBPA 1MT6A 3IHXA 3M56A 3KMTA 3M55A 1MVXA 3M5AA 4YNMA 5EX0A 5JJ0A 5TEGA 1N6AA 4AU7A 4YPAA 5ARGA 4FMUA
chains in the Genus database with same CATH topology
3M59A 5EX3A 4IJ8A 5CCMA 2G46A 5LSXA 5JHNA 1PEGA 1ZKKA 3M53A 1MUFA 4I51A 4NVQA 5JIYA 4JDSA 3MEKA 3S7BA 2O8JA 5TTFA 3EP0A 3F9ZA 4YPUA 3OPEA 4WUYA 4YNPA 5KJMA 3RJWA 4J8OA 3SWCA 4J7IA 3MO2A 5HI7A 2JV0A 3M58A 3MO5A 5EG2A 3S8PA 4YPEA 4O6FA 2W5YA 5LSZA 4QEPA 2BQZA 1XQHA 3VV0A 1O9SA 3DALA 3RAYA 4C1QA 4IJDA 3F9XA 3RIBA 2IGQA 5F6LA 2F69A 4H12A 4LDGA 3QWVA 4Z4PA 2QPWA 3QWPA 4E47A 4O30A 3DB5A 2RFIA 5F5EA 5CPRB 3KMJA 3OOIA 4YNDA 3OS5A 1H3IA 3VUZA 5TH7A 3MO0A 3FPDA 4J83A 3OXLA 1N6CA 4RZ0A 3CBMA 4BUPA 2R3AA 5HQ8A 3F9WA 3QWWA 3S7FA 3PDNA 4JLGA 5KJKA 4J7FA 5F6KC 3K5KA 3HNAA 2W5ZA 5T0KA 5CCLA 4QENA 5KJNA 3KMAA 3N71A 5F59A 3RQ4A 3TG5A 4NJ5A 3CBOA 3BO5A 5AYFA 3F9YA 4MI0A 3M57A 5T0MA 5T5GA 3SW9A 3TG4A 3OXGA 3S7JA 3RU0A 1ML9A 5JINA 4MI5A 3S7DA 1MVHA 1N3JA 4QEOA 5ARFA 5KJLA 3OXFA 3M54A 3CBPA 1MT6A 3IHXA 3M56A 3KMTA 3M55A 1MVXA 3M5AA 4YNMA 5EX0A 5JJ0A 5TEGA 1N6AA 4AU7A 4YPAA 5ARGA 4FMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M59 A;  5EX3 A;  4IJ8 A;  5CCM A;  2G46 A;  5LSX A;  5JHN A;  1PEG A;  1ZKK A;  3M53 A;  1MUF A;  4I51 A;  4NVQ A;  5JIY A;  4JDS A;  3MEK A;  3S7B A;  2O8J A;  5TTF A;  3EP0 A;  3F9Z A;  4YPU A;  3OPE A;  4WUY A;  4YNP A;  5KJM A;  3RJW A;  4J8O A;  3SWC A;  4J7I A;  3MO2 A;  5HI7 A;  2JV0 A;  3M58 A;  3MO5 A;  5EG2 A;  3S8P A;  4YPE A;  4O6F A;  2W5Y A;  5LSZ A;  4QEP A;  2BQZ A;  1XQH A;  3VV0 A;  1O9S A;  3DAL A;  3RAY A;  4C1Q A;  4IJD A;  3F9X A;  3RIB A;  2IGQ A;  5F6L A;  2F69 A;  4H12 A;  4LDG A;  3QWV A;  4Z4P A;  2QPW A;  3QWP A;  4E47 A;  4O30 A;  3DB5 A;  2RFI A;  5F5E A;  5CPR B;  3KMJ A;  3OOI A;  4YND A;  3OS5 A;  1H3I A;  3VUZ A;  5TH7 A;  3MO0 A;  3FPD A;  4J83 A;  3OXL A;  1N6C A;  4RZ0 A;  3CBM A;  4BUP A;  2R3A A;  5HQ8 A;  3F9W A;  3QWW A;  3S7F A;  3PDN A;  4JLG A;  5KJK A;  4J7F A;  5F6K C;  3K5K A;  3HNA A;  2W5Z A;  5T0K A;  5CCL A;  4QEN A;  5KJN A;  3KMA A;  3N71 A;  5F59 A;  3RQ4 A;  3TG5 A;  4NJ5 A;  3CBO A;  3BO5 A;  5AYF A;  3F9Y A;  4MI0 A;  3M57 A;  5T0M A;  5T5G A;  3SW9 A;  3TG4 A;  3OXG A;  3S7J A;  3RU0 A;  1ML9 A;  5JIN A;  4MI5 A;  3S7D A;  1MVH A;  1N3J A;  4QEO A;  5ARF A;  5KJL A;  3OXF A;  3M54 A;  3CBP A;  1MT6 A;  3IHX A;  3M56 A;  3KMT A;  3M55 A;  1MVX A;  3M5A A;  4YNM A;  5EX0 A;  5JJ0 A;  5TEG A;  1N6A A;  4AU7 A;  4YPA A;  5ARG A;  4FMU A; 
#chains in the Genus database with same CATH topology
 3M59 A;  5EX3 A;  4IJ8 A;  5CCM A;  2G46 A;  5LSX A;  5JHN A;  1PEG A;  1ZKK A;  3M53 A;  1MUF A;  4I51 A;  4NVQ A;  5JIY A;  4JDS A;  3MEK A;  3S7B A;  2O8J A;  5TTF A;  3EP0 A;  3F9Z A;  4YPU A;  3OPE A;  4WUY A;  4YNP A;  5KJM A;  3RJW A;  4J8O A;  3SWC A;  4J7I A;  3MO2 A;  5HI7 A;  2JV0 A;  3M58 A;  3MO5 A;  5EG2 A;  3S8P A;  4YPE A;  4O6F A;  2W5Y A;  5LSZ A;  4QEP A;  2BQZ A;  1XQH A;  3VV0 A;  1O9S A;  3DAL A;  3RAY A;  4C1Q A;  4IJD A;  3F9X A;  3RIB A;  2IGQ A;  5F6L A;  2F69 A;  4H12 A;  4LDG A;  3QWV A;  4Z4P A;  2QPW A;  3QWP A;  4E47 A;  4O30 A;  3DB5 A;  2RFI A;  5F5E A;  5CPR B;  3KMJ A;  3OOI A;  4YND A;  3OS5 A;  1H3I A;  3VUZ A;  5TH7 A;  3MO0 A;  3FPD A;  4J83 A;  3OXL A;  1N6C A;  4RZ0 A;  3CBM A;  4BUP A;  2R3A A;  5HQ8 A;  3F9W A;  3QWW A;  3S7F A;  3PDN A;  4JLG A;  5KJK A;  4J7F A;  5F6K C;  3K5K A;  3HNA A;  2W5Z A;  5T0K A;  5CCL A;  4QEN A;  5KJN A;  3KMA A;  3N71 A;  5F59 A;  3RQ4 A;  3TG5 A;  4NJ5 A;  3CBO A;  3BO5 A;  5AYF A;  3F9Y A;  4MI0 A;  3M57 A;  5T0M A;  5T5G A;  3SW9 A;  3TG4 A;  3OXG A;  3S7J A;  3RU0 A;  1ML9 A;  5JIN A;  4MI5 A;  3S7D A;  1MVH A;  1N3J A;  4QEO A;  5ARF A;  5KJL A;  3OXF A;  3M54 A;  3CBP A;  1MT6 A;  3IHX A;  3M56 A;  3KMT A;  3M55 A;  1MVX A;  3M5A A;  4YNM A;  5EX0 A;  5JJ0 A;  5TEG A;  1N6A A;  4AU7 A;  4YPA A;  5ARG A;  4FMU A; 
#chains in the Genus database with same CATH homology
 3M59 A;  5EX3 A;  4IJ8 A;  5CCM A;  2G46 A;  5LSX A;  5JHN A;  1PEG A;  1ZKK A;  3M53 A;  1MUF A;  4I51 A;  4NVQ A;  5JIY A;  4JDS A;  3MEK A;  3S7B A;  2O8J A;  5TTF A;  3EP0 A;  3F9Z A;  4YPU A;  3OPE A;  4WUY A;  4YNP A;  5KJM A;  3RJW A;  4J8O A;  3SWC A;  4J7I A;  3MO2 A;  5HI7 A;  2JV0 A;  3M58 A;  3MO5 A;  5EG2 A;  3S8P A;  4YPE A;  4O6F A;  2W5Y A;  5LSZ A;  4QEP A;  2BQZ A;  1XQH A;  3VV0 A;  1O9S A;  3DAL A;  3RAY A;  4C1Q A;  4IJD A;  3F9X A;  3RIB A;  2IGQ A;  5F6L A;  2F69 A;  4H12 A;  4LDG A;  3QWV A;  4Z4P A;  2QPW A;  3QWP A;  4E47 A;  4O30 A;  3DB5 A;  2RFI A;  5F5E A;  5CPR B;  3KMJ A;  3OOI A;  4YND A;  3OS5 A;  1H3I A;  3VUZ A;  5TH7 A;  3MO0 A;  3FPD A;  4J83 A;  3OXL A;  1N6C A;  4RZ0 A;  3CBM A;  4BUP A;  2R3A A;  5HQ8 A;  3F9W A;  3QWW A;  3S7F A;  3PDN A;  4JLG A;  5KJK A;  4J7F A;  5F6K C;  3K5K A;  3HNA A;  2W5Z A;  5T0K A;  5CCL A;  4QEN A;  5KJN A;  3KMA A;  3N71 A;  5F59 A;  3RQ4 A;  3TG5 A;  4NJ5 A;  3CBO A;  3BO5 A;  5AYF A;  3F9Y A;  4MI0 A;  3M57 A;  5T0M A;  5T5G A;  3SW9 A;  3TG4 A;  3OXG A;  3S7J A;  3RU0 A;  1ML9 A;  5JIN A;  4MI5 A;  3S7D A;  1MVH A;  1N3J A;  4QEO A;  5ARF A;  5KJL A;  3OXF A;  3M54 A;  3CBP A;  1MT6 A;  3IHX A;  3M56 A;  3KMT A;  3M55 A;  1MVX A;  3M5A A;  4YNM A;  5EX0 A;  5JJ0 A;  5TEG A;  1N6A A;  4AU7 A;  4YPA A;  5ARG A;  4FMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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