2W6UA

Structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(g173)-fe complex
Total Genus 226
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
226
sequence length
772
structure length
772
Chain Sequence
QEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
molecule keywords FERRIPYOVERDINE RECEPTOR
total genus 226
structure length 772
sequence length 772
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-12-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07660 STN Secretin and TonB N terminus short domain
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 2w6uA03
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 2w6uA02
3.55.50.30 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Phage tail protein beta-alpha-beta fold 2w6uA01
3DDRA 3FHHA 1XKHA 2W75A 4AIPA 2GUFA 2YSUA 1NQHA 3RGNA 2GSKA 3V8XA 4G08A 1FI1A 1NQEA 4CU4A 3V89A 2W6UA 1PO0A 3M8BA 1FCPA 1QKCA 4EPAA 1FEPA 4RDRA 4JTMA 1KMOA 2M5JA 4M0NA 2D1UA 4AIQA 1QFFA 4M0HA 1PNZA 2HDFA 3EFMA 2GRXA 2HDIA 3CSLA 1UJWA 4RDTA 3CSNA 1NQGA 3EZJA 1XKWA 3QLBA 2FCPA 1KMPA 1PO3A 2W77A 1BY5A 1QJQA 2IAHA 1QFGA 2W6TA 2W76A 2W78A 5FOKA 2W16A 3RGMA 4B7OA 1BY3A 2A02A 4AR0A 3M8DA 2O5PA 3GR5A 1ZZVA 1NQFA
chains in the Genus database with same CATH superfamily
1NQEA 1KMOA 2M5JA 2X531 3ADYA 2D1UA 1QFFA 2GRXA 3D37A 4UHVA 1MPNA 1NQGA 1MPQA 1PO3A 1OH2P 1QFGA 3RGMA 2A02A 4AR0A 1K28D 3GR5A 1ZZVA 2L4WA 1NQFA 1MPRA 1WTHD 4AIPA 2YSUA 4G08A 3V8XA 4CU4A 3V89A 2W6UA 1PO0A 1QKCA 4MTKA 4AIQA 1PNZA 3CSLA 1MPMA 1UJWA 3EZJA 1XKWA 3QLBA 2W77A 1MPOA 2W76A 2W78A 2WZPR 2O5PA 3DDRA 1XKHA 2W75A 2GUFA 1NQHA 1FI1A 3OV5A 3M8BA 1FCPA 1FEPA 4M0NA 4M0HA 2HDFA 3EFMA 1WRUA 3CDDA 1OH2Q 1MALA 1QJQA 2IAHA 2W6TA 5FOKA 2P5ZX 2W16A 3M8DA 1KMPA 1A0SP 3FHHA 2MPRA 3RGNA 2GSKA 2Z6BD 4EPAA 4RDRA 4JTMA 3GS9A 2HDIA 4RDTA 3CSNA 1JBIA 2FCPA 1A0TP 1BY5A 4B7OA 1BY3A 1AF6A
chains in the Genus database with same CATH topology
3DDRA 3FHHA 1XKHA 1WTHD 2W75A 4AIPA 2GUFA 2YSUA 1NQHA 3RGNA 2GSKA 3V8XA 4G08A 1FI1A 1NQEA 4CU4A 3V89A 2W6UA 1PO0A 3OV5A 3M8BA 1FCPA 2Z6BD 1QKCA 4EPAA 1FEPA 4RDRA 4JTMA 1KMOA 2M5JA 2X531 3ADYA 3GS9A 4M0NA 2D1UA 4AIQA 1QFFA 4M0HA 1PNZA 2HDFA 3EFMA 2GRXA 2HDIA 3CSLA 1UJWA 4RDTA 3CSNA 1NQGA 3EZJA 1XKWA 3QLBA 2FCPA 1KMPA 1PO3A 2W77A 1BY5A 1QJQA 2IAHA 1QFGA 2W6TA 2W76A 2W78A 2WZPR 5FOKA 2W16A 3RGMA 4B7OA 1BY3A 2A02A 4AR0A 3M8DA 1K28D 2O5PA 3GR5A 1ZZVA 2L4WA 1NQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DDR A;  3FHH A;  1XKH A;  2W75 A;  4AIP A;  2GUF A;  2YSU A;  1NQH A;  3RGN A;  2GSK A;  3V8X A;  4G08 A;  1FI1 A;  1NQE A;  4CU4 A;  3V89 A;  2W6U A;  1PO0 A;  3M8B A;  1FCP A;  1QKC A;  4EPA A;  1FEP A;  4RDR A;  4JTM A;  1KMO A;  2M5J A;  4M0N A;  2D1U A;  4AIQ A;  1QFF A;  4M0H A;  1PNZ A;  2HDF A;  3EFM A;  2GRX A;  2HDI A;  3CSL A;  1UJW A;  4RDT A;  3CSN A;  1NQG A;  3EZJ A;  1XKW A;  3QLB A;  2FCP A;  1KMP A;  1PO3 A;  2W77 A;  1BY5 A;  1QJQ A;  2IAH A;  1QFG A;  2W6T A;  2W76 A;  2W78 A;  5FOK A;  2W16 A;  3RGM A;  4B7O A;  1BY3 A;  2A02 A;  4AR0 A;  3M8D A;  2O5P A;  3GR5 A;  1ZZV A;  1NQF A; 
#chains in the Genus database with same CATH topology
 1NQE A;  1KMO A;  2M5J A;  2X53 1;  3ADY A;  2D1U A;  1QFF A;  2GRX A;  3D37 A;  4UHV A;  1MPN A;  1NQG A;  1MPQ A;  1PO3 A;  1OH2 P;  1QFG A;  3RGM A;  2A02 A;  4AR0 A;  1K28 D;  3GR5 A;  1ZZV A;  2L4W A;  1NQF A;  1MPR A;  1WTH D;  4AIP A;  2YSU A;  4G08 A;  3V8X A;  4CU4 A;  3V89 A;  2W6U A;  1PO0 A;  1QKC A;  4MTK A;  4AIQ A;  1PNZ A;  3CSL A;  1MPM A;  1UJW A;  3EZJ A;  1XKW A;  3QLB A;  2W77 A;  1MPO A;  2W76 A;  2W78 A;  2WZP R;  2O5P A;  3DDR A;  1XKH A;  2W75 A;  2GUF A;  1NQH A;  1FI1 A;  3OV5 A;  3M8B A;  1FCP A;  1FEP A;  4M0N A;  4M0H A;  2HDF A;  3EFM A;  1WRU A;  3CDD A;  1OH2 Q;  1MAL A;  1QJQ A;  2IAH A;  2W6T A;  5FOK A;  2P5Z X;  2W16 A;  3M8D A;  1KMP A;  1A0S P;  3FHH A;  2MPR A;  3RGN A;  2GSK A;  2Z6B D;  4EPA A;  4RDR A;  4JTM A;  3GS9 A;  2HDI A;  4RDT A;  3CSN A;  1JBI A;  2FCP A;  1A0T P;  1BY5 A;  4B7O A;  1BY3 A;  1AF6 A; 
#chains in the Genus database with same CATH homology
 3DDR A;  3FHH A;  1XKH A;  1WTH D;  2W75 A;  4AIP A;  2GUF A;  2YSU A;  1NQH A;  3RGN A;  2GSK A;  3V8X A;  4G08 A;  1FI1 A;  1NQE A;  4CU4 A;  3V89 A;  2W6U A;  1PO0 A;  3OV5 A;  3M8B A;  1FCP A;  2Z6B D;  1QKC A;  4EPA A;  1FEP A;  4RDR A;  4JTM A;  1KMO A;  2M5J A;  2X53 1;  3ADY A;  3GS9 A;  4M0N A;  2D1U A;  4AIQ A;  1QFF A;  4M0H A;  1PNZ A;  2HDF A;  3EFM A;  2GRX A;  2HDI A;  3CSL A;  1UJW A;  4RDT A;  3CSN A;  1NQG A;  3EZJ A;  1XKW A;  3QLB A;  2FCP A;  1KMP A;  1PO3 A;  2W77 A;  1BY5 A;  1QJQ A;  2IAH A;  1QFG A;  2W6T A;  2W76 A;  2W78 A;  2WZP R;  5FOK A;  2W16 A;  3RGM A;  4B7O A;  1BY3 A;  2A02 A;  4AR0 A;  3M8D A;  1K28 D;  2O5P A;  3GR5 A;  1ZZV A;  2L4W A;  1NQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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