2W7VA

Periplasmic domain of epsl from vibrio parahaemolyticus
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
83
structure length
82
Chain Sequence
STDVAMLSWLAALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAEKFNVEQGQLNRSNVVMGSFVLKRQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
molecule keywords GENERAL SECRETION PATHWAY PROTEIN L
publication title The Dimer Formed by the Periplasmic Domain of Epsl from the Type 2 Secretion System of Vibrio Parahaemolyticus.
pubmed doi rcsb
source organism Vibrio parahaemolyticus
total genus 17
structure length 82
sequence length 83
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.100 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 General secretion pathway protein M, EpsM 2w7vA00
5HL8A 1UV7A 2W7VA
chains in the Genus database with same CATH superfamily
3M4OK 3ERED 5IOQA 3N3YA 2PMZD 4C3JK 2NVQK 1WOPA 1TWHA 1I3QK 3SZZA 3PO2C 2P8TA 3ADAC 3GTJC 5E68A 3HOXC 2VUMK 1Y1VK 5IORA 1R9TA 2YU9C 3HOUC 5FJ8K 1YNJA 4G7OA 1XZQA 1SFOK 3S1QC 5IOSA 4A3BK 3A8KA 5HL8A 3PO3C 3HKZL 1WQHA 4A3KC 4G7ZA 3GTKC 3TTGA 2VUMA 3S15C 5IYCK 3I4MC 3OPFA 4FZBA 4AH6A 1EK8A 4G0UA 3I4NC 2NVTK 1F93A 1TWFA 5IYDC 2CFAA 1XXCA 1SFOA 4LQYA 3CQZC 1ZQ1C 2JA7K 4A93K 4LLGA 3TFJA 1TWGC 1O27A 2GAHC 4X6AC 1IQ0A 4GTFA 5TMCA 4LR2A 4A3MC 3TFHA 4OIOA 2PPBA 2Y3PA 4XSZA 3T02A 3GTOC 4A3JK 3FKIC 1WCMA 2GSNA 4OIQA 3S2HK 1EFWA 3S1NK 3HOZC 3Q3QA 3RZDK 2Y0SL 1BS2A 3S17K 1L0WA 4AYBL 5TJ3A 4KMDA 1G51A 2A6HA 1O2FB 2GSUA 3PO2K 4LK0A 2B63C 4JK1A 2V6UA 4KM9A 3HOXK 1J6VA 2JA6C 5L46A 1YCLA 1R9TC 3S1QK 4BBRC 1K83A 3K7AC 4YFXA 3GTLK 5JFEA 1TWAK 3HOVC 3GTJA 2RGRA 4A3DK 4BXXK 3GTKK 3M3YC 5FLMK 2JA5K 1USOA 1EQRA 1YX2A 2XCOA 2YU9A 2PA8D 4BKWA 4C3HC 4PAAA 5C4XC 2XCQA 1O26A 3CQZK 3GTGA 4A3LK 2NVYK 5IP9K 2R7ZC 1VGXA 2BE5A 4QJVA 1TWCC 3GTKA 4DDQA 4Y7NK 4GTAA 4WJ4A 3A8JA 2R92C 4GT9A 1WOOA 2O5JA 2E2HC 3GTMC 1VH2A 1TWGA 1WSRA 1BDFA 3S14C 4G0VA 1WQFA 4A3FK 2A68A 3T00A 1PJ7A 1TWHK 5C3EK 3GTQC 3GTOA 3FKIA 4Q5SA 3NUHA 4C2MC 2JA6K 2E2JK 1KQ4A 4BLBA 4KMAA 4WILA 1DCHA 1B4BA 5M5WK 4KMHA 4BY1C 1IW7A 2GAGC 1R9TK 3S16C 2B63A 3GTPC 2P5MA 1K83C 3HOYC 2JA6A 1SMYA 4OIPA 1I50A 4A3CC 4GFQA 1B4AA 4P9SA 1BJTA 1USMA 4GTCA 4KN4A 5IYBC 3LAJA 4KAWX 4YG2A 3G4CA 1TWFK 4A3GC 1TWCK 3GTGC 1IE0A 4NOIA 3N0BA 2KWAA 5CJ9A 4C3IC 3S1RC 1WORA 4GTDA 2A6EA 1ZVUA 4BLAA 1VRQC 3FOFA 4LK1A 2R7ZA 5IP7C 1WQGA 1WCMK 3FHZA 1TWCA 2R93C 1J98A 4A3EK 4BBSK 1I6HC 4QIWL 3HOWK 2R92A 3HKZD 3TFIA 5TMFA 4G0WA 4A3IC 2E2HA 4OINA 5JVOA 3GTMA 4BY1K 2FQOA 4KN7A 5CHPA 3OREA 2D6FC 1K83K 3GTQA 1X31C 2CW0A 5M3MK 4KARA 1YNNA 3GTJK 3S2DC 3N0CA 2FQTA 1WSVA 4A3CK 2GSOA 1I50C 3AD7C 2YU9K 3HOUK 4Q4ZA 3BUEA 4KDDA 5C44C 3GTPA 4A3GK 1Y1WC 2Y0SD 4P5AA 4AYBD 1PJ5A 3PO3K 1RU0A 3GTGK 3GSIA 5M3FK 4A3KK 2NVXC 4C3IK 1O24A 3S15K 3I4MK 2E2IA 3FOEA 1INNA 4KB2A 3L4JA 3I4NK 1ZBSA 5IYDK 4P5BA 5IP7K 1J6WA 3H0GC 5IOTA 4YFKA 2O5IA 3S1MC 1TWGK 2A69A 4C45A 2JA8C 3M4OC 4X6AK 4C3JC 1O2AA 3QX3A 4A3MK 1HQMA 3G4AA 3GEEA 2NVQC 3OEPA 1I3QC 1IL2A 5M5XK 3H3VL 3GTOK 3FKIK 1J6XA 2R93A 1V5VA 3GIRA 3HOZK 1Y1VC 2WAQL 1O29A 2V6TA 4KATA 1DCPA 4PABA 1VJEA 2B63K 1I6VA 4A3BC 1EH1A 3S2DK 4MQ9A 4OIRA 1I50K 3H3VD 3LAPA 3SZYA 1ZYRA 2NVTC 1O25A 2JH3A 4BBRK 3K7AK 3HOVK 2ZUEA 2JA7C 3M3YK 4A93C 4QJVB 4J3NA 4KASA 4GTEA 3HXAA 1XZPB 2XCRB 4C3HK 1WOSA 2E2IC 1Y1WA 2WB1L 5C4XK 4A3JC 3CAGA 2R7ZK 3S1MK 4KC6A 3S2HC 1F7UA 3S1NC 3RZDC 2NVXA 3S17C 4XSXA 1AB4A 3VA7A 4BY7C 2R92K 4O2DA 3LPXA 3S0XA 3H0GA 4Y52C 2E2HK 1DCOA 3GTMK 2WB1D 3S14K 2EBBA 4G7HA 3T01A 4XLNA 1I3QA 3GTLC 4XLPA 3GTQK 1TWAC 4C2MK 4A3DC 4BXXC 3MMLB 5FLMC 2JA5C 4ILDA 1Y1VA 4KM8A 3GEHA 3DXJA 3S16K 3GTPK 4MEYA 1O28A 4A3LC 2NVYC 4QIWD 5IP9C 4M1XA 3RZOC 1XZQB 3HOYK 4KB4A 1GE9A 4GTLA 3V4GA 1XXAA 4Y7NC 3JSTA 1WIHA 4ZH4A 4LOWA 2E2IK 5IYBK 1ISEA 4KMUA 3A8IA 2ZFZA 2ZUFA 1PJ6A 1ZXOA 2CFAB 3AH5A 2JA7A 5C4JC 1HI9A 1JOEA 1JVIA 4A3FC 1XXBA 4BY7K 3S1RK 4LJZA 4Y52K 1TWHC 5C3EC 3EQLA 4XCHA 1IBAA 1O2BA 2PA8L 2E2JC 2R93K 5EGEA 1I6HK 3AQPA 1JQWA 4A3IK 4WJ3M 5M5YK 3GDZA 2VUMC 3BP3A 3L4KA 2PHCB 4GZYA 1DD5A 1F7VA 3WODA 4YFNA 2V6SA 3GTLA 1TWFC 3IPJA 3RZOK 1UV7A 1TWAA 2RH6A 1SFOC 1XPPA 1IS1A 2JA5A 3AD8C 1XZPA 4RMFA 5EGHA 3BP8C 4FM9A 5IYCC 1VLOA 1BGWA 3CQZA 5C44K 1Y1WK 2NVYA 3AQOA 5C4JK 2WAQD 1C0AA 1WCMC 2PMZL 4GTBA 2W7VA 4A3EC 5D4DA 4BBSC 2NVXK 3HOWC 3AD9C 1EI6A 1F9NA 3H0GK 3GEIA 4MEXA 2JA8K
chains in the Genus database with same CATH topology
5HL8A 1UV7A 2W7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL8 A;  1UV7 A;  2W7V A; 
#chains in the Genus database with same CATH topology
 3M4O K;  3ERE D;  5IOQ A;  3N3Y A;  2PMZ D;  4C3J K;  2NVQ K;  1WOP A;  1TWH A;  1I3Q K;  3SZZ A;  3PO2 C;  2P8T A;  3ADA C;  3GTJ C;  5E68 A;  3HOX C;  2VUM K;  1Y1V K;  5IOR A;  1R9T A;  2YU9 C;  3HOU C;  5FJ8 K;  1YNJ A;  4G7O A;  1XZQ A;  1SFO K;  3S1Q C;  5IOS A;  4A3B K;  3A8K A;  5HL8 A;  3PO3 C;  3HKZ L;  1WQH A;  4A3K C;  4G7Z A;  3GTK C;  3TTG A;  2VUM A;  3S15 C;  5IYC K;  3I4M C;  3OPF A;  4FZB A;  4AH6 A;  1EK8 A;  4G0U A;  3I4N C;  2NVT K;  1F93 A;  1TWF A;  5IYD C;  2CFA A;  1XXC A;  1SFO A;  4LQY A;  3CQZ C;  1ZQ1 C;  2JA7 K;  4A93 K;  4LLG A;  3TFJ A;  1TWG C;  1O27 A;  2GAH C;  4X6A C;  1IQ0 A;  4GTF A;  5TMC A;  4LR2 A;  4A3M C;  3TFH A;  4OIO A;  2PPB A;  2Y3P A;  4XSZ A;  3T02 A;  3GTO C;  4A3J K;  3FKI C;  1WCM A;  2GSN A;  4OIQ A;  3S2H K;  1EFW A;  3S1N K;  3HOZ C;  3Q3Q A;  3RZD K;  2Y0S L;  1BS2 A;  3S17 K;  1L0W A;  4AYB L;  5TJ3 A;  4KMD A;  1G51 A;  2A6H A;  1O2F B;  2GSU A;  3PO2 K;  4LK0 A;  2B63 C;  4JK1 A;  2V6U A;  4KM9 A;  3HOX K;  1J6V A;  2JA6 C;  5L46 A;  1YCL A;  1R9T C;  3S1Q K;  4BBR C;  1K83 A;  3K7A C;  4YFX A;  3GTL K;  5JFE A;  1TWA K;  3HOV C;  3GTJ A;  2RGR A;  4A3D K;  4BXX K;  3GTK K;  3M3Y C;  5FLM K;  2JA5 K;  1USO A;  1EQR A;  1YX2 A;  2XCO A;  2YU9 A;  2PA8 D;  4BKW A;  4C3H C;  4PAA A;  5C4X C;  2XCQ A;  1O26 A;  3CQZ K;  3GTG A;  4A3L K;  2NVY K;  5IP9 K;  2R7Z C;  1VGX A;  2BE5 A;  4QJV A;  1TWC C;  3GTK A;  4DDQ A;  4Y7N K;  4GTA A;  4WJ4 A;  3A8J A;  2R92 C;  4GT9 A;  1WOO A;  2O5J A;  2E2H C;  3GTM C;  1VH2 A;  1TWG A;  1WSR A;  1BDF A;  3S14 C;  4G0V A;  1WQF A;  4A3F K;  2A68 A;  3T00 A;  1PJ7 A;  1TWH K;  5C3E K;  3GTQ C;  3GTO A;  3FKI A;  4Q5S A;  3NUH A;  4C2M C;  2JA6 K;  2E2J K;  1KQ4 A;  4BLB A;  4KMA A;  4WIL A;  1DCH A;  1B4B A;  5M5W K;  4KMH A;  4BY1 C;  1IW7 A;  2GAG C;  1R9T K;  3S16 C;  2B63 A;  3GTP C;  2P5M A;  1K83 C;  3HOY C;  2JA6 A;  1SMY A;  4OIP A;  1I50 A;  4A3C C;  4GFQ A;  1B4A A;  4P9S A;  1BJT A;  1USM A;  4GTC A;  4KN4 A;  5IYB C;  3LAJ A;  4KAW X;  4YG2 A;  3G4C A;  1TWF K;  4A3G C;  1TWC K;  3GTG C;  1IE0 A;  4NOI A;  3N0B A;  2KWA A;  5CJ9 A;  4C3I C;  3S1R C;  1WOR A;  4GTD A;  2A6E A;  1ZVU A;  4BLA A;  1VRQ C;  3FOF A;  4LK1 A;  2R7Z A;  5IP7 C;  1WQG A;  1WCM K;  3FHZ A;  1TWC A;  2R93 C;  1J98 A;  4A3E K;  4BBS K;  1I6H C;  4QIW L;  3HOW K;  2R92 A;  3HKZ D;  3TFI A;  5TMF A;  4G0W A;  4A3I C;  2E2H A;  4OIN A;  5JVO A;  3GTM A;  4BY1 K;  2FQO A;  4KN7 A;  5CHP A;  3ORE A;  2D6F C;  1K83 K;  3GTQ A;  1X31 C;  2CW0 A;  5M3M K;  4KAR A;  1YNN A;  3GTJ K;  3S2D C;  3N0C A;  2FQT A;  1WSV A;  4A3C K;  2GSO A;  1I50 C;  3AD7 C;  2YU9 K;  3HOU K;  4Q4Z A;  3BUE A;  4KDD A;  5C44 C;  3GTP A;  4A3G K;  1Y1W C;  2Y0S D;  4P5A A;  4AYB D;  1PJ5 A;  3PO3 K;  1RU0 A;  3GTG K;  3GSI A;  5M3F K;  4A3K K;  2NVX C;  4C3I K;  1O24 A;  3S15 K;  3I4M K;  2E2I A;  3FOE A;  1INN A;  4KB2 A;  3L4J A;  3I4N K;  1ZBS A;  5IYD K;  4P5B A;  5IP7 K;  1J6W A;  3H0G C;  5IOT A;  4YFK A;  2O5I A;  3S1M C;  1TWG K;  2A69 A;  4C45 A;  2JA8 C;  3M4O C;  4X6A K;  4C3J C;  1O2A A;  3QX3 A;  4A3M K;  1HQM A;  3G4A A;  3GEE A;  2NVQ C;  3OEP A;  1I3Q C;  1IL2 A;  5M5X K;  3H3V L;  3GTO K;  3FKI K;  1J6X A;  2R93 A;  1V5V A;  3GIR A;  3HOZ K;  1Y1V C;  2WAQ L;  1O29 A;  2V6T A;  4KAT A;  1DCP A;  4PAB A;  1VJE A;  2B63 K;  1I6V A;  4A3B C;  1EH1 A;  3S2D K;  4MQ9 A;  4OIR A;  1I50 K;  3H3V D;  3LAP A;  3SZY A;  1ZYR A;  2NVT C;  1O25 A;  2JH3 A;  4BBR K;  3K7A K;  3HOV K;  2ZUE A;  2JA7 C;  3M3Y K;  4A93 C;  4QJV B;  4J3N A;  4KAS A;  4GTE A;  3HXA A;  1XZP B;  2XCR B;  4C3H K;  1WOS A;  2E2I C;  1Y1W A;  2WB1 L;  5C4X K;  4A3J C;  3CAG A;  2R7Z K;  3S1M K;  4KC6 A;  3S2H C;  1F7U A;  3S1N C;  3RZD C;  2NVX A;  3S17 C;  4XSX A;  1AB4 A;  3VA7 A;  4BY7 C;  2R92 K;  4O2D A;  3LPX A;  3S0X A;  3H0G A;  4Y52 C;  2E2H K;  1DCO A;  3GTM K;  2WB1 D;  3S14 K;  2EBB A;  4G7H A;  3T01 A;  4XLN A;  1I3Q A;  3GTL C;  4XLP A;  3GTQ K;  1TWA C;  4C2M K;  4A3D C;  4BXX C;  3MML B;  5FLM C;  2JA5 C;  4ILD A;  1Y1V A;  4KM8 A;  3GEH A;  3DXJ A;  3S16 K;  3GTP K;  4MEY A;  1O28 A;  4A3L C;  2NVY C;  4QIW D;  5IP9 C;  4M1X A;  3RZO C;  1XZQ B;  3HOY K;  4KB4 A;  1GE9 A;  4GTL A;  3V4G A;  1XXA A;  4Y7N C;  3JST A;  1WIH A;  4ZH4 A;  4LOW A;  2E2I K;  5IYB K;  1ISE A;  4KMU A;  3A8I A;  2ZFZ A;  2ZUF A;  1PJ6 A;  1ZXO A;  2CFA B;  3AH5 A;  2JA7 A;  5C4J C;  1HI9 A;  1JOE A;  1JVI A;  4A3F C;  1XXB A;  4BY7 K;  3S1R K;  4LJZ A;  4Y52 K;  1TWH C;  5C3E C;  3EQL A;  4XCH A;  1IBA A;  1O2B A;  2PA8 L;  2E2J C;  2R93 K;  5EGE A;  1I6H K;  3AQP A;  1JQW A;  4A3I K;  4WJ3 M;  5M5Y K;  3GDZ A;  2VUM C;  3BP3 A;  3L4K A;  2PHC B;  4GZY A;  1DD5 A;  1F7V A;  3WOD A;  4YFN A;  2V6S A;  3GTL A;  1TWF C;  3IPJ A;  3RZO K;  1UV7 A;  1TWA A;  2RH6 A;  1SFO C;  1XPP A;  1IS1 A;  2JA5 A;  3AD8 C;  1XZP A;  4RMF A;  5EGH A;  3BP8 C;  4FM9 A;  5IYC C;  1VLO A;  1BGW A;  3CQZ A;  5C44 K;  1Y1W K;  2NVY A;  3AQO A;  5C4J K;  2WAQ D;  1C0A A;  1WCM C;  2PMZ L;  4GTB A;  2W7V A;  4A3E C;  5D4D A;  4BBS C;  2NVX K;  3HOW C;  3AD9 C;  1EI6 A;  1F9N A;  3H0G K;  3GEI A;  4MEX A;  2JA8 K; 
#chains in the Genus database with same CATH homology
 5HL8 A;  1UV7 A;  2W7V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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