The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
83
|
structure length |
82
|
Chain Sequence |
STDVAMLSWLAALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAEKFNVEQGQLNRSNVVMGSFVLKRQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Dimer Formed by the Periplasmic Domain of Epsl from the Type 2 Secretion System of Vibrio Parahaemolyticus.
pubmed doi rcsb |
| molecule keywords |
GENERAL SECRETION PATHWAY PROTEIN L
|
| molecule tags |
Transport protein
|
| source organism |
Vibrio parahaemolyticus
|
| total genus |
17
|
| structure length |
82
|
| sequence length |
83
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-01-06 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Gyrase A; domain 2 | General secretion pathway protein M, EpsM |
#chains in the Genus database with same CATH superfamily 1UV7 A; 5HL8 A; 2W7V A; #chains in the Genus database with same CATH topology 2R93 C; 2JA5 C; 3FKI C; 3I4M K; 3G4C A; 4C3H K; 1XPP A; 2JA6 A; 4A3E C; 2P8T A; 1PJ6 A; 1R9T K; 3GEH A; 4XCH A; 3HOU K; 4KB2 A; 4LLG A; 2CFA A; 3PO3 K; 1TWF A; 3FOE A; 3T02 A; 4MEY A; 5FLM K; 3HOX C; 4M1X A; 5IP7 C; 1BS2 A; 3H0G C; 1O25 A; 1YX2 A; 4A3G C; 3GIR A; 3AD9 C; 1EH1 A; 2PPB A; 5M3M K; 2YU9 A; 4GTF A; 1O2B A; 2CW0 A; 4X6A C; 3S15 C; 4KN7 A; 2NVX K; 1I50 K; 1L0W A; 2A6E A; 4LJZ A; 4BBR K; 3ORE A; 3G4A A; 1F7V A; 3GTM C; 3GTO K; 1O29 A; 2XCQ A; 4BY1 K; 3T00 A; 2Y0S L; 5EGH A; 5C44 K; 2R7Z A; 3PO2 C; 3S1R C; 1WIH A; 1WSR A; 4DDQ A; 4A3M K; 5CHP A; 4Q4Z A; 4KAR A; 4FZB A; 2NVY A; 5EGE A; 1TWC C; 3OEP A; 2WB1 D; 2GSO A; 1I50 C; 3GTQ A; 4BBR C; 3GTO C; 2EBB A; 4C2M K; 3N0C A; 4Y52 K; 2Y0S D; 4A3L K; 2P5M A; 1EI6 A; 1I3Q C; 1VH2 A; 1TWF K; 2JA6 C; 4Y7N C; 4QJV A; 5CJ9 A; 1VGX A; 4LOW A; 4PAB A; 4OIN A; 3GEI A; 1EFW A; 1TWG K; 3NUH A; 1XZP A; 1IW7 A; 2YU9 K; 2E2J C; 4G0V A; 3N3Y A; 4YFN A; 2E2H A; 4A3K C; 4P9S A; 5M5X K; 5IYC K; 4KN4 A; 5IOQ A; 1YNJ A; 2NVQ C; 5IYD K; 3L4K A; 1R9T A; 1XXB A; 3IPJ A; 2PA8 L; 4G0U A; 1YNN A; 1O2F B; 2XCO A; 1PJ7 A; 4J3N A; 4OIQ A; 3GTQ K; 2B63 A; 4A3J C; 5JVO A; 4P5A A; 1HI9 A; 4KAT A; 4GTL A; 1IE0 A; 2R7Z C; 2O5I A; 4G7H A; 2A69 A; 2D6F C; 2RH6 A; 4BXX K; 5C4J C; 1F7U A; 2NVY C; 4LK0 A; 1ZVU A; 4A3C C; 3M4O K; 3S17 C; 1XXC A; 1X31 C; 3A8K A; 1IS1 A; 5IOS A; 3GTG A; 3A8I A; 1HQM A; 3OPF A; 3GTJ K; 3LAJ A; 3N0B A; 4A93 C; 1INN A; 3HOY C; 4GZY A; 5E68 A; 2E2H K; 3RZD C; 4BXX C; 3HKZ L; 3QX3 A; 4Q5S A; 4XLP A; 4A3F K; 1DCO A; 4LR2 A; 4BY7 K; 3EQL A; 3Q3Q A; 1ZXO A; 4C3I K; 3SZZ A; 1WOP A; 4WIL A; 1BDF A; 4KB4 A; 4BBS K; 3S16 K; 2E2H C; 3I4M C; 4C3H C; 1WQG A; 2B63 K; 4KMU A; 2CFA B; 3HKZ D; 2R92 K; 3GTL K; 1Y1V A; 1JVI A; 2VUM K; 1VLO A; 4KM9 A; 1R9T C; 1TWG A; 4C3I C; 3S1N K; 5IOR A; 3HOU C; 4BBS C; 1O27 A; 1DCP A; 3V4G A; 3GTG K; 3PO3 C; 3TFJ A; 1WCM A; 5FLM C; 3AD7 C; 3HXA A; 4A3D K; 2GAH C; 2E2I K; 3I4N K; 1ZQ1 C; 2PMZ L; 4GTA A; 3S1N C; 1J6V A; 1DD5 A; 1B4B A; 4BKW A; 1C0A A; 3S2D K; 1UV7 A; 1Y1W K; 5TJ3 A; 1V5V A; 2NVX C; 4MEX A; 1VRQ C; 2JA8 K; 1J6X A; 2ZUE A; 2JA7 K; 3GTK A; 1I6H K; 4BY1 C; 4GT9 A; 5C44 C; 3SZY A; 3HOV K; 2PMZ D; 4A3M C; 1TWA K; 3M3Y K; 1XXA A; 1DCH A; 2V6T A; 4QJV B; 1SFO A; 1Y1V K; 2FQT A; 4GTB A; 3MML B; 2BE5 A; 5M3F K; 4C2M C; 3GTJ A; 1BJT A; 4RMF A; 1XZP B; 4BLB A; 1ZBS A; 4KMH A; 4Y52 C; 3FOF A; 4A3L C; 4A3I K; 5C3E K; 4KMA A; 3GTP K; 1TWF C; 1WCM K; 1JOE A; 4QIW L; 1GE9 A; 3S2H K; 3FHZ A; 1BGW A; 1TWG C; 1WQF A; 3GEE A; 3VA7 A; 2PHC B; 2YU9 C; 1USM A; 3S1Q K; 2A68 A; 1USO A; 3RZO K; 1XZQ A; 4G0W A; 4OIR A; 1WCM C; 1WQH A; 1B4A A; 5IYC C; 2R92 A; 1K83 K; 4C3J K; 1VJE A; 3GTK K; 3GTL A; 1JQW A; 5IYD C; 1WSV A; 1O2A A; 3S1M K; 2NVT K; 2VUM A; 5L46 A; 4XLN A; 1O24 A; 5FJ8 K; 1O26 A; 4GTD A; 1SFO K; 3TFH A; 3HOZ K; 1IQ0 A; 2PA8 D; 5TMF A; 1ISE A; 3GTQ C; 3T01 A; 1TWH K; 3HOW K; 4C3J C; 4YG2 A; 2GSN A; 5C4X K; 4BLA A; 3CQZ K; 3GDZ A; 4A3B K; 1F93 A; 1G51 A; 2E2I A; 2R93 K; 1F9N A; 2FQO A; 5JFE A; 3FKI K; 4OIP A; 3M4O C; 5D4D A; 1Y1W A; 2W7V A; 5IP9 K; 2Y3P A; 1EQR A; 3GTJ C; 1TWC A; 3DXJ A; 4KDD A; 3WOD A; 2JA7 A; 1TWA A; 1I3Q A; 4C45 A; 4MQ9 A; 5IP9 C; 2O5J A; 4A3F C; 3HOX K; 4BY7 C; 4G7Z A; 5IP7 K; 3H0G K; 3ERE D; 2RGR A; 4ILD A; 1EK8 A; 1KQ4 A; 1YCL A; 3S16 C; 4A3G K; 4WJ4 A; 3BUE A; 2B63 C; 3GTP A; 4LK1 A; 2R92 C; 4KAS A; 4KC6 A; 3GSI A; 3S15 K; 4X6A K; 5M5W K; 3GTL C; 4YFK A; 3AQP A; 2ZUF A; 4GFQ A; 3GTM K; 2VUM C; 2A6H A; 1IBA A; 4LQY A; 3H3V L; 3S1R K; 4KAW X; 3PO2 K; 3K7A K; 2JH3 A; 3GTG C; 2WB1 L; 1TWC K; 1AB4 A; 2XCR B; 3S14 K; 2KWA A; 1K83 A; 1WOS A; 3JST A; 4AYB L; 4A3D C; 2E2I C; 3I4N C; 5TMC A; 4G7O A; 3S2D C; 4OIO A; 1IL2 A; 1I3Q K; 1Y1W C; 2JA6 K; 3K7A C; 4Y7N K; 3H3V D; 4JK1 A; 2JA8 C; 3AD8 C; 5IYB K; 1TWH A; 3S14 C; 1WOO A; 5HL8 A; 2JA7 C; 1O28 A; 1I6H C; 3CQZ A; 4YFX A; 1ZYR A; 4AYB D; 3CAG A; 2V6U A; 3HOV C; 2E2J K; 1TWA C; 3M3Y C; 2R93 A; 2JA5 A; 4GTE A; 4O2D A; 3FKI A; 1Y1V C; 4A3K K; 3BP8 C; 3TTG A; 5IYB C; 2NVQ K; 4WJ3 M; 2ZFZ A; 3S0X A; 4A3I C; 4XSX A; 5C3E C; 3LAP A; 1XZQ B; 3GTP C; 1J6W A; 4NOI A; 2WAQ L; 1WOR A; 5IOT A; 4A3J K; 4QIW D; 3S2H C; 5M5Y K; 4P5B A; 4KMD A; 1I6V A; 3TFI A; 4XSZ A; 1J98 A; 4ZH4 A; 3S1Q C; 2R7Z K; 2GSU A; 3H0G A; 3RZO C; 4AH6 A; 5C4J K; 2NVY K; 4A3C K; 3S17 K; 1K83 C; 2WAQ D; 3GTK C; 3AQO A; 3S1M C; 3GTM A; 2NVT C; 3A8J A; 4A93 K; 3LPX A; 3HOY K; 2JA5 K; 3BP3 A; 3HOZ C; 1SFO C; 1PJ5 A; 3RZD K; 2GAG C; 1RU0 A; 3L4J A; 4A3E K; 1TWH C; 4KM8 A; 3HOW C; 2NVX A; 5C4X C; 4GTC A; 3CQZ C; 1I50 A; 4FM9 A; 4A3B C; 1SMY A; 3ADA C; 3AH5 A; 3GTO A; 4PAA A; 2V6S A; #chains in the Genus database with same CATH homology 1UV7 A; 5HL8 A; 2W7V A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
