2W8GA

Aplysia californica achbp bound to in silico compound 35
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
205
Chain Sequence
b'QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Use of Acetylcholine Binding Protein in the Search for Novel Alpha7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X- Ray Analysis.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
molecule tags Receptor
total genus 49
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2009-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2w8gA00
3PEOA 3U8KA 3ZDGA 3U8MA 2C9TA 3JAEA 4UM3A 4A97A 3UU6A 3SQ6A 4ALXA 2UZ6A 4NZBA 5L4HA 2BJ0A 2BYSA 5J5IA 3WTHA 4UM3P 2ZJVA 4NPPA 5HEHA 3EHZA 5HEJA 4BQTA 2XNUA 2XYSA 2YN6A 4QH4A 3SIOA 5LXBA 5AFKA 2Y7YA 4HQPA 5AFJA 2VL0A 2WNJA 2W8FA 3SH1A 5BP0A 3TLVA 5HEUA 4ILCA 3UUBA 2Y56A 3TLTA 3WTLA 5J0ZA 2Y57A 4ZZCA 3UU5A 2PGZA 1UW6A 5KE4A 2W8GA 4QACA 5HEGA 4ILBA 4ILAA 5JMEA 4HFBA 4F8HA 4HFDA 5HEOA 4QAAA 2BG9A 5HCJA 3U8JA 3ZDHA 4AFHA 2BYPA 2YMEA 3WTOA 4HFIA 2WN9A 4TNWA 4LMKA 3WTNA 2XQ4A 3RIAA 4UXUA 4HFHA 4X5TA 5TVCA 3UU3A 4A98A 4AFTA 4ZK4A 2X00D 1I9BA 4UM1A 3LSVA 3P50A 3EI0A 4PIRA 4BFQA 3WTMA 2BYQA 4TWDA 3UU4A 3EAMA 3U8LA 2XQ6A 5AFMB 2BG9B 2XNTA 3C84A 3RIFA 4AFGA 5KZUA 4XK9A 2WZYA 4HFEA 2BG9E 4QH1A 2X00A 2BR8A 2Y58A 4TNVA 3UU8A 4ZR6A 5J5HA 5AFMA 5J5FA 4UY2A 5J5GA 3IGQA 5FJVA 3WTKA 2BG9C 3ZKRA 5HCMA 2WNCA 5SYOA 5AFLA 5CFBA 3JADA 4TWHA 5AFNA 2XNVA 3RHWA 2QC1B 4QABA 2YMDA 4EZ1A 5AFHA 4WV9A 3TLUA 3TLSA 3T4MA 5L47A 2XQ8A 2XYTA 4B5DA 2XQ9A 4ZJSA 3JAFA 3WIPA 3SQ9A 1UV6A 2Y54A 4COFA 2XQ3A 3PMZA 2PH9A 4LMJA 5AINA 5LG3A 2XQ7A 3GUAA 2ZJUA 4HFCA 2BYRA 3WTIA 2XQ5A 3RQUA 4LMLA 3UQ7A 4IL4A 2WNLA 2YOEA 4ZZBA 3C79A 5IUXA 4UM3S 4D01A 4Z90A 4TWFA 1UX2A 2BYNA 3P4WA 4ZJTA 2BR7A 2XQAA 4ZRUA 4IREA 4QH5A 2XZ6A 3RI5A 4IL9A 3TLWA 5CO5A 4XHEA 4FRRA 4ZK1A 3RQWA 5L4EA 2XZ5A 3WTJA 2YKSA 5BRXA 5BW2A 4Z91A 3U8NA 4DBMA 3UQ4A
chains in the Genus database with same CATH superfamily
3PEOA 3U8KA 3ZDGA 3U8MA 2C9TA 3JAEA 4UM3A 4A97A 3UU6A 3SQ6A 4ALXA 2UZ6A 4NZBA 5L4HA 2BJ0A 2BYSA 5J5IA 3WTHA 4UM3P 2ZJVA 4NPPA 5HEHA 3EHZA 5HEJA 4BQTA 2XNUA 2XYSA 2YN6A 4QH4A 3SIOA 5LXBA 5AFKA 2Y7YA 4HQPA 5AFJA 2VL0A 2WNJA 2W8FA 3SH1A 5BP0A 3TLVA 5HEUA 4ILCA 3UUBA 2Y56A 3TLTA 3WTLA 5J0ZA 2Y57A 4ZZCA 3UU5A 2PGZA 1UW6A 5KE4A 2W8GA 4QACA 5HEGA 4ILBA 4ILAA 5JMEA 4HFBA 4F8HA 4HFDA 5HEOA 4QAAA 2BG9A 5HCJA 3U8JA 3ZDHA 4AFHA 2BYPA 2YMEA 3WTOA 4HFIA 2WN9A 4TNWA 4LMKA 3WTNA 2XQ4A 3RIAA 4UXUA 4HFHA 4X5TA 5TVCA 3UU3A 4A98A 4AFTA 4ZK4A 2X00D 1I9BA 4UM1A 3LSVA 3P50A 3EI0A 4PIRA 4BFQA 3WTMA 2BYQA 4TWDA 3UU4A 3EAMA 3U8LA 2XQ6A 5AFMB 2BG9B 2XNTA 3C84A 3RIFA 4AFGA 5KZUA 4XK9A 2WZYA 4HFEA 2BG9E 4QH1A 2X00A 2BR8A 2Y58A 4TNVA 3UU8A 4ZR6A 5J5HA 5AFMA 5J5FA 4UY2A 5J5GA 3IGQA 5FJVA 3WTKA 2BG9C 3ZKRA 5HCMA 2WNCA 5SYOA 5AFLA 5CFBA 3JADA 4TWHA 5AFNA 2XNVA 3RHWA 2QC1B 4QABA 2YMDA 4EZ1A 5AFHA 4WV9A 3TLUA 3TLSA 3T4MA 5L47A 2XQ8A 2XYTA 4B5DA 2XQ9A 4ZJSA 3JAFA 3WIPA 3SQ9A 1UV6A 2Y54A 4COFA 2XQ3A 3PMZA 2PH9A 4LMJA 5AINA 5LG3A 2XQ7A 3GUAA 2ZJUA 4HFCA 2BYRA 3WTIA 2XQ5A 3RQUA 4LMLA 3UQ7A 4IL4A 2WNLA 2YOEA 4ZZBA 3C79A 5IUXA 4UM3S 4D01A 4Z90A 4TWFA 1UX2A 2BYNA 3P4WA 4ZJTA 2BR7A 2XQAA 4ZRUA 4IREA 4QH5A 2XZ6A 3RI5A 4IL9A 3TLWA 5CO5A 4XHEA 4FRRA 4ZK1A 3RQWA 5L4EA 2XZ5A 3WTJA 2YKSA 5BRXA 5BW2A 4Z91A 3U8NA 4DBMA 3UQ4A
chains in the Genus database with same CATH topology
3PEOA 3U8KA 3ZDGA 3U8MA 2C9TA 3JAEA 4UM3A 4A97A 3UU6A 3SQ6A 4ALXA 2UZ6A 4NZBA 5L4HA 2BJ0A 2BYSA 5J5IA 3WTHA 4UM3P 2ZJVA 4NPPA 5HEHA 3EHZA 5HEJA 4BQTA 2XNUA 2XYSA 2YN6A 4QH4A 3SIOA 5LXBA 5AFKA 2Y7YA 4HQPA 5AFJA 2VL0A 2WNJA 2W8FA 3SH1A 5BP0A 3TLVA 5HEUA 4ILCA 3UUBA 2Y56A 3TLTA 3WTLA 5J0ZA 2Y57A 4ZZCA 3UU5A 2PGZA 1UW6A 5KE4A 2W8GA 4QACA 5HEGA 4ILBA 4ILAA 5JMEA 4HFBA 4F8HA 4HFDA 5HEOA 4QAAA 2BG9A 5HCJA 3U8JA 3ZDHA 4AFHA 2BYPA 2YMEA 3WTOA 4HFIA 2WN9A 4TNWA 4LMKA 3WTNA 2XQ4A 3RIAA 4UXUA 4HFHA 4X5TA 5TVCA 3UU3A 4A98A 4AFTA 4ZK4A 2X00D 1I9BA 4UM1A 3LSVA 3P50A 3EI0A 4PIRA 4BFQA 3WTMA 2BYQA 4TWDA 3UU4A 3EAMA 3U8LA 2XQ6A 5AFMB 2BG9B 2XNTA 3C84A 3RIFA 4AFGA 5KZUA 4XK9A 2WZYA 4HFEA 2BG9E 4QH1A 2X00A 2BR8A 2Y58A 4TNVA 3UU8A 4ZR6A 5J5HA 5AFMA 5J5FA 4UY2A 5J5GA 3IGQA 5FJVA 3WTKA 2BG9C 3ZKRA 5HCMA 2WNCA 5SYOA 5AFLA 5CFBA 3JADA 4TWHA 5AFNA 2XNVA 3RHWA 2QC1B 4QABA 2YMDA 4EZ1A 5AFHA 4WV9A 3TLUA 3TLSA 3T4MA 5L47A 2XQ8A 2XYTA 4B5DA 2XQ9A 4ZJSA 3JAFA 3WIPA 3SQ9A 1UV6A 2Y54A 4COFA 2XQ3A 3PMZA 2PH9A 4LMJA 5AINA 5LG3A 2XQ7A 3GUAA 2ZJUA 4HFCA 2BYRA 3WTIA 2XQ5A 3RQUA 4LMLA 3UQ7A 4IL4A 2WNLA 2YOEA 4ZZBA 3C79A 5IUXA 4UM3S 4D01A 4Z90A 4TWFA 1UX2A 2BYNA 3P4WA 4ZJTA 2BR7A 2XQAA 4ZRUA 4IREA 4QH5A 2XZ6A 3RI5A 4IL9A 3TLWA 5CO5A 4XHEA 4FRRA 4ZK1A 3RQWA 5L4EA 2XZ5A 3WTJA 2YKSA 5BRXA 5BW2A 4Z91A 3U8NA 4DBMA 3UQ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PEO A;  3U8K A;  3ZDG A;  3U8M A;  2C9T A;  3JAE A;  4UM3 A;  4A97 A;  3UU6 A;  3SQ6 A;  4ALX A;  2UZ6 A;  4NZB A;  5L4H A;  2BJ0 A;  2BYS A;  5J5I A;  3WTH A;  4UM3 P;  2ZJV A;  4NPP A;  5HEH A;  3EHZ A;  5HEJ A;  4BQT A;  2XNU A;  2XYS A;  2YN6 A;  4QH4 A;  3SIO A;  5LXB A;  5AFK A;  2Y7Y A;  4HQP A;  5AFJ A;  2VL0 A;  2WNJ A;  2W8F A;  3SH1 A;  5BP0 A;  3TLV A;  5HEU A;  4ILC A;  3UUB A;  2Y56 A;  3TLT A;  3WTL A;  5J0Z A;  2Y57 A;  4ZZC A;  3UU5 A;  2PGZ A;  1UW6 A;  5KE4 A;  2W8G A;  4QAC A;  5HEG A;  4ILB A;  4ILA A;  5JME A;  4HFB A;  4F8H A;  4HFD A;  5HEO A;  4QAA A;  2BG9 A;  5HCJ A;  3U8J A;  3ZDH A;  4AFH A;  2BYP A;  2YME A;  3WTO A;  4HFI A;  2WN9 A;  4TNW A;  4LMK A;  3WTN A;  2XQ4 A;  3RIA A;  4UXU A;  4HFH A;  4X5T A;  5TVC A;  3UU3 A;  4A98 A;  4AFT A;  4ZK4 A;  2X00 D;  1I9B A;  4UM1 A;  3LSV A;  3P50 A;  3EI0 A;  4PIR A;  4BFQ A;  3WTM A;  2BYQ A;  4TWD A;  3UU4 A;  3EAM A;  3U8L A;  2XQ6 A;  5AFM B;  2BG9 B;  2XNT A;  3C84 A;  3RIF A;  4AFG A;  5KZU A;  4XK9 A;  2WZY A;  4HFE A;  2BG9 E;  4QH1 A;  2X00 A;  2BR8 A;  2Y58 A;  4TNV A;  3UU8 A;  4ZR6 A;  5J5H A;  5AFM A;  5J5F A;  4UY2 A;  5J5G A;  3IGQ A;  5FJV A;  3WTK A;  2BG9 C;  3ZKR A;  5HCM A;  2WNC A;  5SYO A;  5AFL A;  5CFB A;  3JAD A;  4TWH A;  5AFN A;  2XNV A;  3RHW A;  2QC1 B;  4QAB A;  2YMD A;  4EZ1 A;  5AFH A;  4WV9 A;  3TLU A;  3TLS A;  3T4M A;  5L47 A;  2XQ8 A;  2XYT A;  4B5D A;  2XQ9 A;  4ZJS A;  3JAF A;  3WIP A;  3SQ9 A;  1UV6 A;  2Y54 A;  4COF A;  2XQ3 A;  3PMZ A;  2PH9 A;  4LMJ A;  5AIN A;  5LG3 A;  2XQ7 A;  3GUA A;  2ZJU A;  4HFC A;  2BYR A;  3WTI A;  2XQ5 A;  3RQU A;  4LML A;  3UQ7 A;  4IL4 A;  2WNL A;  2YOE A;  4ZZB A;  3C79 A;  5IUX A;  4UM3 S;  4D01 A;  4Z90 A;  4TWF A;  1UX2 A;  2BYN A;  3P4W A;  4ZJT A;  2BR7 A;  2XQA A;  4ZRU A;  4IRE A;  4QH5 A;  2XZ6 A;  3RI5 A;  4IL9 A;  3TLW A;  5CO5 A;  4XHE A;  4FRR A;  4ZK1 A;  3RQW A;  5L4E A;  2XZ5 A;  3WTJ A;  2YKS A;  5BRX A;  5BW2 A;  4Z91 A;  3U8N A;  4DBM A;  3UQ4 A; 
#chains in the Genus database with same CATH topology
 3PEO A;  3U8K A;  3ZDG A;  3U8M A;  2C9T A;  3JAE A;  4UM3 A;  4A97 A;  3UU6 A;  3SQ6 A;  4ALX A;  2UZ6 A;  4NZB A;  5L4H A;  2BJ0 A;  2BYS A;  5J5I A;  3WTH A;  4UM3 P;  2ZJV A;  4NPP A;  5HEH A;  3EHZ A;  5HEJ A;  4BQT A;  2XNU A;  2XYS A;  2YN6 A;  4QH4 A;  3SIO A;  5LXB A;  5AFK A;  2Y7Y A;  4HQP A;  5AFJ A;  2VL0 A;  2WNJ A;  2W8F A;  3SH1 A;  5BP0 A;  3TLV A;  5HEU A;  4ILC A;  3UUB A;  2Y56 A;  3TLT A;  3WTL A;  5J0Z A;  2Y57 A;  4ZZC A;  3UU5 A;  2PGZ A;  1UW6 A;  5KE4 A;  2W8G A;  4QAC A;  5HEG A;  4ILB A;  4ILA A;  5JME A;  4HFB A;  4F8H A;  4HFD A;  5HEO A;  4QAA A;  2BG9 A;  5HCJ A;  3U8J A;  3ZDH A;  4AFH A;  2BYP A;  2YME A;  3WTO A;  4HFI A;  2WN9 A;  4TNW A;  4LMK A;  3WTN A;  2XQ4 A;  3RIA A;  4UXU A;  4HFH A;  4X5T A;  5TVC A;  3UU3 A;  4A98 A;  4AFT A;  4ZK4 A;  2X00 D;  1I9B A;  4UM1 A;  3LSV A;  3P50 A;  3EI0 A;  4PIR A;  4BFQ A;  3WTM A;  2BYQ A;  4TWD A;  3UU4 A;  3EAM A;  3U8L A;  2XQ6 A;  5AFM B;  2BG9 B;  2XNT A;  3C84 A;  3RIF A;  4AFG A;  5KZU A;  4XK9 A;  2WZY A;  4HFE A;  2BG9 E;  4QH1 A;  2X00 A;  2BR8 A;  2Y58 A;  4TNV A;  3UU8 A;  4ZR6 A;  5J5H A;  5AFM A;  5J5F A;  4UY2 A;  5J5G A;  3IGQ A;  5FJV A;  3WTK A;  2BG9 C;  3ZKR A;  5HCM A;  2WNC A;  5SYO A;  5AFL A;  5CFB A;  3JAD A;  4TWH A;  5AFN A;  2XNV A;  3RHW A;  2QC1 B;  4QAB A;  2YMD A;  4EZ1 A;  5AFH A;  4WV9 A;  3TLU A;  3TLS A;  3T4M A;  5L47 A;  2XQ8 A;  2XYT A;  4B5D A;  2XQ9 A;  4ZJS A;  3JAF A;  3WIP A;  3SQ9 A;  1UV6 A;  2Y54 A;  4COF A;  2XQ3 A;  3PMZ A;  2PH9 A;  4LMJ A;  5AIN A;  5LG3 A;  2XQ7 A;  3GUA A;  2ZJU A;  4HFC A;  2BYR A;  3WTI A;  2XQ5 A;  3RQU A;  4LML A;  3UQ7 A;  4IL4 A;  2WNL A;  2YOE A;  4ZZB A;  3C79 A;  5IUX A;  4UM3 S;  4D01 A;  4Z90 A;  4TWF A;  1UX2 A;  2BYN A;  3P4W A;  4ZJT A;  2BR7 A;  2XQA A;  4ZRU A;  4IRE A;  4QH5 A;  2XZ6 A;  3RI5 A;  4IL9 A;  3TLW A;  5CO5 A;  4XHE A;  4FRR A;  4ZK1 A;  3RQW A;  5L4E A;  2XZ5 A;  3WTJ A;  2YKS A;  5BRX A;  5BW2 A;  4Z91 A;  3U8N A;  4DBM A;  3UQ4 A; 
#chains in the Genus database with same CATH homology
 3PEO A;  3U8K A;  3ZDG A;  3U8M A;  2C9T A;  3JAE A;  4UM3 A;  4A97 A;  3UU6 A;  3SQ6 A;  4ALX A;  2UZ6 A;  4NZB A;  5L4H A;  2BJ0 A;  2BYS A;  5J5I A;  3WTH A;  4UM3 P;  2ZJV A;  4NPP A;  5HEH A;  3EHZ A;  5HEJ A;  4BQT A;  2XNU A;  2XYS A;  2YN6 A;  4QH4 A;  3SIO A;  5LXB A;  5AFK A;  2Y7Y A;  4HQP A;  5AFJ A;  2VL0 A;  2WNJ A;  2W8F A;  3SH1 A;  5BP0 A;  3TLV A;  5HEU A;  4ILC A;  3UUB A;  2Y56 A;  3TLT A;  3WTL A;  5J0Z A;  2Y57 A;  4ZZC A;  3UU5 A;  2PGZ A;  1UW6 A;  5KE4 A;  2W8G A;  4QAC A;  5HEG A;  4ILB A;  4ILA A;  5JME A;  4HFB A;  4F8H A;  4HFD A;  5HEO A;  4QAA A;  2BG9 A;  5HCJ A;  3U8J A;  3ZDH A;  4AFH A;  2BYP A;  2YME A;  3WTO A;  4HFI A;  2WN9 A;  4TNW A;  4LMK A;  3WTN A;  2XQ4 A;  3RIA A;  4UXU A;  4HFH A;  4X5T A;  5TVC A;  3UU3 A;  4A98 A;  4AFT A;  4ZK4 A;  2X00 D;  1I9B A;  4UM1 A;  3LSV A;  3P50 A;  3EI0 A;  4PIR A;  4BFQ A;  3WTM A;  2BYQ A;  4TWD A;  3UU4 A;  3EAM A;  3U8L A;  2XQ6 A;  5AFM B;  2BG9 B;  2XNT A;  3C84 A;  3RIF A;  4AFG A;  5KZU A;  4XK9 A;  2WZY A;  4HFE A;  2BG9 E;  4QH1 A;  2X00 A;  2BR8 A;  2Y58 A;  4TNV A;  3UU8 A;  4ZR6 A;  5J5H A;  5AFM A;  5J5F A;  4UY2 A;  5J5G A;  3IGQ A;  5FJV A;  3WTK A;  2BG9 C;  3ZKR A;  5HCM A;  2WNC A;  5SYO A;  5AFL A;  5CFB A;  3JAD A;  4TWH A;  5AFN A;  2XNV A;  3RHW A;  2QC1 B;  4QAB A;  2YMD A;  4EZ1 A;  5AFH A;  4WV9 A;  3TLU A;  3TLS A;  3T4M A;  5L47 A;  2XQ8 A;  2XYT A;  4B5D A;  2XQ9 A;  4ZJS A;  3JAF A;  3WIP A;  3SQ9 A;  1UV6 A;  2Y54 A;  4COF A;  2XQ3 A;  3PMZ A;  2PH9 A;  4LMJ A;  5AIN A;  5LG3 A;  2XQ7 A;  3GUA A;  2ZJU A;  4HFC A;  2BYR A;  3WTI A;  2XQ5 A;  3RQU A;  4LML A;  3UQ7 A;  4IL4 A;  2WNL A;  2YOE A;  4ZZB A;  3C79 A;  5IUX A;  4UM3 S;  4D01 A;  4Z90 A;  4TWF A;  1UX2 A;  2BYN A;  3P4W A;  4ZJT A;  2BR7 A;  2XQA A;  4ZRU A;  4IRE A;  4QH5 A;  2XZ6 A;  3RI5 A;  4IL9 A;  3TLW A;  5CO5 A;  4XHE A;  4FRR A;  4ZK1 A;  3RQW A;  5L4E A;  2XZ5 A;  3WTJ A;  2YKS A;  5BRX A;  5BW2 A;  4Z91 A;  3U8N A;  4DBM A;  3UQ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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