2W8GA

Aplysia californica achbp bound to in silico compound 35
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Use of Acetylcholine Binding Protein in the Search for Novel Alpha7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X- Ray Analysis.
pubmed doi rcsb
total genus 49
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2009-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2w8gA00
4ZR6A 2ZJVA 2WNJA 5AINA 5BRXA 2YKSA 2WN9A 2YMDA 4UM3S 3ZDHA 2Y7YA 3RQWA 2WNLA 3U8MA 3P4WA 2Y58A 4XHEA 2BG9A 2Y56A 4ZK1A 5BW2A 4TNWA 2VL0A 4QH4A 4ILCA 2XQ8A 4ILAA 4XK9A 4QH5A 4DBMA 4NPPA 5J5GA 2W8FA 2XQ3A 2XYTA 3U8KA 3WTKA 3ZKRA 4AFGA 4AFHA 5LXBA 4FRRA 1UW6A 2BYSA 4LMJA 3U8NA 3JAFA 5J5IA 4UXUA 5HCMA 2XZ6A 4BQTA 4ZZBA 4QABA 3SQ6A 4NZBA 5HEGA 4HFEA 5AFHA 5FJVA 3P50A 4ZJSA 3IGQA 2WZYA 3JAEA 2BYNA 4UY2A 3U8LA 4HFIA 5IUXA 4ZK4A 5CFBA 3WTOA 3UQ4A 4Z91A 3C79A 3UU4A 4Z90A 5HEUA 3WIPA 4D01A 2X00D 3WTNA 2QC1B 5TVCA 5KE4A 3PMZA 2Y54A 4UM3P 4BFQA 3RHWA 3UU3A 5L47A 5BP0A 3JADA 3SQ9A 5SYOA 3WTJA 3PEOA 3SH1A 4ILBA 2BYRA 2BG9C 2UZ6A 5AFJA 2PGZA 4QACA 4ZJTA 2BYPA 4QAAA 2C9TA 2XQ4A 4ZRUA 2XQAA 4B5DA 5AFMB 4WV9A 3SIOA 5HEHA 5AFMA 2XNVA 5HEJA 2XZ5A 2W8GA 4LMKA 3UQ7A 2XQ7A 4A97A 3EAMA 4HFDA 3GUAA 3RIAA 5L4HA 5CO5A 4F8HA 3TLWA 2YMEA 4HQPA 2XQ6A 4LMLA 2YN6A 2BR8A 4COFA 3EI0A 2YOEA 3RI5A 4A98A 4ZZCA 3TLVA 5J5HA 4IL4A 2BG9E 2BYQA 3TLTA 5HCJA 4ALXA 5J5FA 3WTLA 2WNCA 4TWFA 2BR7A 3UUBA 1UV6A 3UU5A 3WTIA 4QH1A 5J0ZA 4TWHA 3U8JA 5JMEA 4IREA 1UX2A 2ZJUA 4AFTA 2BJ0A 5HEOA 2Y57A 2XNTA 3UU8A 1I9BA 3LSVA 2XYSA 5KZUA 2BG9B 5AFNA 5LG3A 4UM3A 3TLSA 5AFLA 2XQ5A 4X5TA 3WTMA 4IL9A 3RQUA 3ZDGA 4HFBA 2X00A 3UU6A 2XNUA 3WTHA 3T4MA 5AFKA 4TNVA 4UM1A 3C84A 4EZ1A 3EHZA 3TLUA 4HFHA 2XQ9A 3RIFA 4HFCA 2PH9A 5L4EA 4TWDA 4PIRA
chains in the Genus database with same CATH superfamily
4ZR6A 2ZJVA 2WNJA 5AINA 5BRXA 2YKSA 2WN9A 2YMDA 4UM3S 3ZDHA 2Y7YA 3RQWA 2WNLA 3U8MA 3P4WA 2Y58A 4XHEA 2BG9A 2Y56A 4ZK1A 5BW2A 4TNWA 2VL0A 4QH4A 4ILCA 2XQ8A 4ILAA 4XK9A 4QH5A 4DBMA 4NPPA 5J5GA 2W8FA 2XQ3A 2XYTA 3U8KA 3WTKA 3ZKRA 4AFGA 4AFHA 5LXBA 4FRRA 1UW6A 2BYSA 4LMJA 3U8NA 3JAFA 5J5IA 4UXUA 5HCMA 2XZ6A 4BQTA 4ZZBA 4QABA 3SQ6A 4NZBA 5HEGA 4HFEA 5AFHA 5FJVA 3P50A 4ZJSA 3IGQA 2WZYA 3JAEA 2BYNA 4UY2A 3U8LA 4HFIA 5IUXA 4ZK4A 5CFBA 3WTOA 3UQ4A 4Z91A 3C79A 3UU4A 4Z90A 5HEUA 3WIPA 4D01A 2X00D 3WTNA 2QC1B 5TVCA 5KE4A 3PMZA 2Y54A 4UM3P 4BFQA 3RHWA 3UU3A 5L47A 5BP0A 3JADA 3SQ9A 5SYOA 3WTJA 3PEOA 3SH1A 4ILBA 2BYRA 2BG9C 2UZ6A 5AFJA 2PGZA 4QACA 4ZJTA 2BYPA 4QAAA 2C9TA 2XQ4A 4ZRUA 2XQAA 4B5DA 5AFMB 4WV9A 3SIOA 5HEHA 5AFMA 2XNVA 5HEJA 2XZ5A 2W8GA 4LMKA 3UQ7A 2XQ7A 4A97A 3EAMA 4HFDA 3GUAA 3RIAA 5L4HA 5CO5A 4F8HA 3TLWA 2YMEA 4HQPA 2XQ6A 4LMLA 2YN6A 2BR8A 4COFA 3EI0A 2YOEA 3RI5A 4A98A 4ZZCA 3TLVA 5J5HA 4IL4A 2BG9E 2BYQA 3TLTA 5HCJA 4ALXA 5J5FA 3WTLA 2WNCA 4TWFA 2BR7A 3UUBA 1UV6A 3UU5A 3WTIA 4QH1A 5J0ZA 4TWHA 3U8JA 5JMEA 4IREA 1UX2A 2ZJUA 4AFTA 2BJ0A 5HEOA 2Y57A 2XNTA 3UU8A 1I9BA 3LSVA 2XYSA 5KZUA 2BG9B 5AFNA 5LG3A 4UM3A 3TLSA 5AFLA 2XQ5A 4X5TA 3WTMA 4IL9A 3RQUA 3ZDGA 4HFBA 2X00A 3UU6A 2XNUA 3WTHA 3T4MA 5AFKA 4TNVA 4UM1A 3C84A 4EZ1A 3EHZA 3TLUA 4HFHA 2XQ9A 3RIFA 4HFCA 2PH9A 5L4EA 4TWDA 4PIRA
chains in the Genus database with same CATH topology
4ZR6A 2ZJVA 2WNJA 5AINA 5BRXA 2YKSA 2WN9A 2YMDA 4UM3S 3ZDHA 2Y7YA 3RQWA 2WNLA 3U8MA 3P4WA 2Y58A 4XHEA 2BG9A 2Y56A 4ZK1A 5BW2A 4TNWA 2VL0A 4QH4A 4ILCA 2XQ8A 4ILAA 4XK9A 4QH5A 4DBMA 4NPPA 5J5GA 2W8FA 2XQ3A 2XYTA 3U8KA 3WTKA 3ZKRA 4AFGA 4AFHA 5LXBA 4FRRA 1UW6A 2BYSA 4LMJA 3U8NA 3JAFA 5J5IA 4UXUA 5HCMA 2XZ6A 4BQTA 4ZZBA 4QABA 3SQ6A 4NZBA 5HEGA 4HFEA 5AFHA 5FJVA 3P50A 4ZJSA 3IGQA 2WZYA 3JAEA 2BYNA 4UY2A 3U8LA 4HFIA 5IUXA 4ZK4A 5CFBA 3WTOA 3UQ4A 4Z91A 3C79A 3UU4A 4Z90A 5HEUA 3WIPA 4D01A 2X00D 3WTNA 2QC1B 5TVCA 5KE4A 3PMZA 2Y54A 4UM3P 4BFQA 3RHWA 3UU3A 5L47A 5BP0A 3JADA 3SQ9A 5SYOA 3WTJA 3PEOA 3SH1A 4ILBA 2BYRA 2BG9C 2UZ6A 5AFJA 2PGZA 4QACA 4ZJTA 2BYPA 4QAAA 2C9TA 2XQ4A 4ZRUA 2XQAA 4B5DA 5AFMB 4WV9A 3SIOA 5HEHA 5AFMA 2XNVA 5HEJA 2XZ5A 2W8GA 4LMKA 3UQ7A 2XQ7A 4A97A 3EAMA 4HFDA 3GUAA 3RIAA 5L4HA 5CO5A 4F8HA 3TLWA 2YMEA 4HQPA 2XQ6A 4LMLA 2YN6A 2BR8A 4COFA 3EI0A 2YOEA 3RI5A 4A98A 4ZZCA 3TLVA 5J5HA 4IL4A 2BG9E 2BYQA 3TLTA 5HCJA 4ALXA 5J5FA 3WTLA 2WNCA 4TWFA 2BR7A 3UUBA 1UV6A 3UU5A 3WTIA 4QH1A 5J0ZA 4TWHA 3U8JA 5JMEA 4IREA 1UX2A 2ZJUA 4AFTA 2BJ0A 5HEOA 2Y57A 2XNTA 3UU8A 1I9BA 3LSVA 2XYSA 5KZUA 2BG9B 5AFNA 5LG3A 4UM3A 3TLSA 5AFLA 2XQ5A 4X5TA 3WTMA 4IL9A 3RQUA 3ZDGA 4HFBA 2X00A 3UU6A 2XNUA 3WTHA 3T4MA 5AFKA 4TNVA 4UM1A 3C84A 4EZ1A 3EHZA 3TLUA 4HFHA 2XQ9A 3RIFA 4HFCA 2PH9A 5L4EA 4TWDA 4PIRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZR6 A;  2ZJV A;  2WNJ A;  5AIN A;  5BRX A;  2YKS A;  2WN9 A;  2YMD A;  4UM3 S;  3ZDH A;  2Y7Y A;  3RQW A;  2WNL A;  3U8M A;  3P4W A;  2Y58 A;  4XHE A;  2BG9 A;  2Y56 A;  4ZK1 A;  5BW2 A;  4TNW A;  2VL0 A;  4QH4 A;  4ILC A;  2XQ8 A;  4ILA A;  4XK9 A;  4QH5 A;  4DBM A;  4NPP A;  5J5G A;  2W8F A;  2XQ3 A;  2XYT A;  3U8K A;  3WTK A;  3ZKR A;  4AFG A;  4AFH A;  5LXB A;  4FRR A;  1UW6 A;  2BYS A;  4LMJ A;  3U8N A;  3JAF A;  5J5I A;  4UXU A;  5HCM A;  2XZ6 A;  4BQT A;  4ZZB A;  4QAB A;  3SQ6 A;  4NZB A;  5HEG A;  4HFE A;  5AFH A;  5FJV A;  3P50 A;  4ZJS A;  3IGQ A;  2WZY A;  3JAE A;  2BYN A;  4UY2 A;  3U8L A;  4HFI A;  5IUX A;  4ZK4 A;  5CFB A;  3WTO A;  3UQ4 A;  4Z91 A;  3C79 A;  3UU4 A;  4Z90 A;  5HEU A;  3WIP A;  4D01 A;  2X00 D;  3WTN A;  2QC1 B;  5TVC A;  5KE4 A;  3PMZ A;  2Y54 A;  4UM3 P;  4BFQ A;  3RHW A;  3UU3 A;  5L47 A;  5BP0 A;  3JAD A;  3SQ9 A;  5SYO A;  3WTJ A;  3PEO A;  3SH1 A;  4ILB A;  2BYR A;  2BG9 C;  2UZ6 A;  5AFJ A;  2PGZ A;  4QAC A;  4ZJT A;  2BYP A;  4QAA A;  2C9T A;  2XQ4 A;  4ZRU A;  2XQA A;  4B5D A;  5AFM B;  4WV9 A;  3SIO A;  5HEH A;  5AFM A;  2XNV A;  5HEJ A;  2XZ5 A;  2W8G A;  4LMK A;  3UQ7 A;  2XQ7 A;  4A97 A;  3EAM A;  4HFD A;  3GUA A;  3RIA A;  5L4H A;  5CO5 A;  4F8H A;  3TLW A;  2YME A;  4HQP A;  2XQ6 A;  4LML A;  2YN6 A;  2BR8 A;  4COF A;  3EI0 A;  2YOE A;  3RI5 A;  4A98 A;  4ZZC A;  3TLV A;  5J5H A;  4IL4 A;  2BG9 E;  2BYQ A;  3TLT A;  5HCJ A;  4ALX A;  5J5F A;  3WTL A;  2WNC A;  4TWF A;  2BR7 A;  3UUB A;  1UV6 A;  3UU5 A;  3WTI A;  4QH1 A;  5J0Z A;  4TWH A;  3U8J A;  5JME A;  4IRE A;  1UX2 A;  2ZJU A;  4AFT A;  2BJ0 A;  5HEO A;  2Y57 A;  2XNT A;  3UU8 A;  1I9B A;  3LSV A;  2XYS A;  5KZU A;  2BG9 B;  5AFN A;  5LG3 A;  4UM3 A;  3TLS A;  5AFL A;  2XQ5 A;  4X5T A;  3WTM A;  4IL9 A;  3RQU A;  3ZDG A;  4HFB A;  2X00 A;  3UU6 A;  2XNU A;  3WTH A;  3T4M A;  5AFK A;  4TNV A;  4UM1 A;  3C84 A;  4EZ1 A;  3EHZ A;  3TLU A;  4HFH A;  2XQ9 A;  3RIF A;  4HFC A;  2PH9 A;  5L4E A;  4TWD A;  4PIR A; 
#chains in the Genus database with same CATH topology
 4ZR6 A;  2ZJV A;  2WNJ A;  5AIN A;  5BRX A;  2YKS A;  2WN9 A;  2YMD A;  4UM3 S;  3ZDH A;  2Y7Y A;  3RQW A;  2WNL A;  3U8M A;  3P4W A;  2Y58 A;  4XHE A;  2BG9 A;  2Y56 A;  4ZK1 A;  5BW2 A;  4TNW A;  2VL0 A;  4QH4 A;  4ILC A;  2XQ8 A;  4ILA A;  4XK9 A;  4QH5 A;  4DBM A;  4NPP A;  5J5G A;  2W8F A;  2XQ3 A;  2XYT A;  3U8K A;  3WTK A;  3ZKR A;  4AFG A;  4AFH A;  5LXB A;  4FRR A;  1UW6 A;  2BYS A;  4LMJ A;  3U8N A;  3JAF A;  5J5I A;  4UXU A;  5HCM A;  2XZ6 A;  4BQT A;  4ZZB A;  4QAB A;  3SQ6 A;  4NZB A;  5HEG A;  4HFE A;  5AFH A;  5FJV A;  3P50 A;  4ZJS A;  3IGQ A;  2WZY A;  3JAE A;  2BYN A;  4UY2 A;  3U8L A;  4HFI A;  5IUX A;  4ZK4 A;  5CFB A;  3WTO A;  3UQ4 A;  4Z91 A;  3C79 A;  3UU4 A;  4Z90 A;  5HEU A;  3WIP A;  4D01 A;  2X00 D;  3WTN A;  2QC1 B;  5TVC A;  5KE4 A;  3PMZ A;  2Y54 A;  4UM3 P;  4BFQ A;  3RHW A;  3UU3 A;  5L47 A;  5BP0 A;  3JAD A;  3SQ9 A;  5SYO A;  3WTJ A;  3PEO A;  3SH1 A;  4ILB A;  2BYR A;  2BG9 C;  2UZ6 A;  5AFJ A;  2PGZ A;  4QAC A;  4ZJT A;  2BYP A;  4QAA A;  2C9T A;  2XQ4 A;  4ZRU A;  2XQA A;  4B5D A;  5AFM B;  4WV9 A;  3SIO A;  5HEH A;  5AFM A;  2XNV A;  5HEJ A;  2XZ5 A;  2W8G A;  4LMK A;  3UQ7 A;  2XQ7 A;  4A97 A;  3EAM A;  4HFD A;  3GUA A;  3RIA A;  5L4H A;  5CO5 A;  4F8H A;  3TLW A;  2YME A;  4HQP A;  2XQ6 A;  4LML A;  2YN6 A;  2BR8 A;  4COF A;  3EI0 A;  2YOE A;  3RI5 A;  4A98 A;  4ZZC A;  3TLV A;  5J5H A;  4IL4 A;  2BG9 E;  2BYQ A;  3TLT A;  5HCJ A;  4ALX A;  5J5F A;  3WTL A;  2WNC A;  4TWF A;  2BR7 A;  3UUB A;  1UV6 A;  3UU5 A;  3WTI A;  4QH1 A;  5J0Z A;  4TWH A;  3U8J A;  5JME A;  4IRE A;  1UX2 A;  2ZJU A;  4AFT A;  2BJ0 A;  5HEO A;  2Y57 A;  2XNT A;  3UU8 A;  1I9B A;  3LSV A;  2XYS A;  5KZU A;  2BG9 B;  5AFN A;  5LG3 A;  4UM3 A;  3TLS A;  5AFL A;  2XQ5 A;  4X5T A;  3WTM A;  4IL9 A;  3RQU A;  3ZDG A;  4HFB A;  2X00 A;  3UU6 A;  2XNU A;  3WTH A;  3T4M A;  5AFK A;  4TNV A;  4UM1 A;  3C84 A;  4EZ1 A;  3EHZ A;  3TLU A;  4HFH A;  2XQ9 A;  3RIF A;  4HFC A;  2PH9 A;  5L4E A;  4TWD A;  4PIR A; 
#chains in the Genus database with same CATH homology
 4ZR6 A;  2ZJV A;  2WNJ A;  5AIN A;  5BRX A;  2YKS A;  2WN9 A;  2YMD A;  4UM3 S;  3ZDH A;  2Y7Y A;  3RQW A;  2WNL A;  3U8M A;  3P4W A;  2Y58 A;  4XHE A;  2BG9 A;  2Y56 A;  4ZK1 A;  5BW2 A;  4TNW A;  2VL0 A;  4QH4 A;  4ILC A;  2XQ8 A;  4ILA A;  4XK9 A;  4QH5 A;  4DBM A;  4NPP A;  5J5G A;  2W8F A;  2XQ3 A;  2XYT A;  3U8K A;  3WTK A;  3ZKR A;  4AFG A;  4AFH A;  5LXB A;  4FRR A;  1UW6 A;  2BYS A;  4LMJ A;  3U8N A;  3JAF A;  5J5I A;  4UXU A;  5HCM A;  2XZ6 A;  4BQT A;  4ZZB A;  4QAB A;  3SQ6 A;  4NZB A;  5HEG A;  4HFE A;  5AFH A;  5FJV A;  3P50 A;  4ZJS A;  3IGQ A;  2WZY A;  3JAE A;  2BYN A;  4UY2 A;  3U8L A;  4HFI A;  5IUX A;  4ZK4 A;  5CFB A;  3WTO A;  3UQ4 A;  4Z91 A;  3C79 A;  3UU4 A;  4Z90 A;  5HEU A;  3WIP A;  4D01 A;  2X00 D;  3WTN A;  2QC1 B;  5TVC A;  5KE4 A;  3PMZ A;  2Y54 A;  4UM3 P;  4BFQ A;  3RHW A;  3UU3 A;  5L47 A;  5BP0 A;  3JAD A;  3SQ9 A;  5SYO A;  3WTJ A;  3PEO A;  3SH1 A;  4ILB A;  2BYR A;  2BG9 C;  2UZ6 A;  5AFJ A;  2PGZ A;  4QAC A;  4ZJT A;  2BYP A;  4QAA A;  2C9T A;  2XQ4 A;  4ZRU A;  2XQA A;  4B5D A;  5AFM B;  4WV9 A;  3SIO A;  5HEH A;  5AFM A;  2XNV A;  5HEJ A;  2XZ5 A;  2W8G A;  4LMK A;  3UQ7 A;  2XQ7 A;  4A97 A;  3EAM A;  4HFD A;  3GUA A;  3RIA A;  5L4H A;  5CO5 A;  4F8H A;  3TLW A;  2YME A;  4HQP A;  2XQ6 A;  4LML A;  2YN6 A;  2BR8 A;  4COF A;  3EI0 A;  2YOE A;  3RI5 A;  4A98 A;  4ZZC A;  3TLV A;  5J5H A;  4IL4 A;  2BG9 E;  2BYQ A;  3TLT A;  5HCJ A;  4ALX A;  5J5F A;  3WTL A;  2WNC A;  4TWF A;  2BR7 A;  3UUB A;  1UV6 A;  3UU5 A;  3WTI A;  4QH1 A;  5J0Z A;  4TWH A;  3U8J A;  5JME A;  4IRE A;  1UX2 A;  2ZJU A;  4AFT A;  2BJ0 A;  5HEO A;  2Y57 A;  2XNT A;  3UU8 A;  1I9B A;  3LSV A;  2XYS A;  5KZU A;  2BG9 B;  5AFN A;  5LG3 A;  4UM3 A;  3TLS A;  5AFL A;  2XQ5 A;  4X5T A;  3WTM A;  4IL9 A;  3RQU A;  3ZDG A;  4HFB A;  2X00 A;  3UU6 A;  2XNU A;  3WTH A;  3T4M A;  5AFK A;  4TNV A;  4UM1 A;  3C84 A;  4EZ1 A;  3EHZ A;  3TLU A;  4HFH A;  2XQ9 A;  3RIF A;  4HFC A;  2PH9 A;  5L4E A;  4TWD A;  4PIR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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