2W8GA

Aplysia californica achbp bound to in silico compound 35
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
publication title Use of Acetylcholine Binding Protein in the Search for Novel Alpha7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X- Ray Analysis.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 49
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2009-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2w8gA00
4ILAA 5BP0A 4BFQA 3TLWA 2BR7A 3U8LA 4UM1A 2BG9A 3EAMA 2YN6A 2BYQA 3EI0A 2BG9B 4HFBA 5HEHA 2XQ5A 3ZDGA 2UZ6A 4HFDA 5L4HA 5J5IA 2X00A 5J0ZA 3UU8A 2XZ6A 3UU5A 2YOEA 4D01A 3SH1A 3UUBA 2QC1B 2WNJA 4QH1A 4QH4A 2YMEA 4Z90A 3RIFA 3RQWA 3UU6A 3WTKA 4ZZCA 3WTHA 3WIPA 5HCJA 5BW2A 4UXUA 5LG3A 3RQUA 2XQ9A 2XZ5A 4LMJA 5AFKA 2BJ0A 3U8KA 5J5FA 3IGQA 2BG9E 1UV6A 3SQ9A 2XYSA 3TLSA 4HQPA 4UY2A 4ZR6A 3C84A 2BYRA 2Y58A 5AFMA 5AFMB 4AFGA 2X00D 4COFA 1UX2A 4IL9A 5AINA 5J5HA 4TNWA 4A98A 4EZ1A 4UM3P 4XHEA 4Z91A 3EHZA 4ZK4A 5KE4A 5IUXA 2PGZA 3WTIA 4ILBA 2BYNA 2W8GA 3TLUA 3UU3A 4AFHA 3WTOA 2YMDA 3SIOA 5HEJA 2XQ4A 2XQ6A 3PEOA 4ILCA 4PIRA 2XQAA 5CFBA 4ZZBA 3UU4A 4HFCA 3P50A 3T4MA 3U8NA 5AFNA 2BYSA 2YKSA 2WNLA 4LMLA 4FRRA 3GUAA 4X5TA 3P4WA 5AFJA 2XQ7A 4QABA 2ZJUA 4TWFA 3UQ4A 4A97A 2Y56A 2PH9A 5LXBA 4QH5A 2WN9A 3ZKRA 2XQ8A 3WTMA 4NPPA 5L47A 4B5DA 5FJVA 5HEUA 5BRXA 5JMEA 2W8FA 3RIAA 2WNCA 5HEGA 3JAEA 4ALXA 3RHWA 2XNVA 5SYOA 2Y57A 4QAAA 2Y54A 2WZYA 4IL4A 3U8MA 3PMZA 5CO5A 3C79A 3WTLA 4F8HA 4UM3S 2XNTA 1UW6A 5TVCA 3UQ7A 3TLVA 2VL0A 4XK9A 5AFLA 2XNUA 4ZRUA 3RI5A 3WTJA 3LSVA 4QACA 4TWHA 2XQ3A 2BG9C 3TLTA 5L4EA 3SQ6A 3JAFA 4HFEA 4DBMA 3U8JA 3JADA 5HEOA 4BQTA 4WV9A 2BYPA 4HFHA 5HCMA 3WTNA 2Y7YA 2C9TA 4HFIA 4UM3A 3ZDHA 4ZK1A 4AFTA 4ZJSA 2BR8A 4IREA 4TWDA 1I9BA 5KZUA 2XYTA 4TNVA 4ZJTA 5AFHA 5J5GA 4NZBA 2ZJVA 4LMKA
chains in the Genus database with same CATH superfamily
4ILAA 5BP0A 4BFQA 3TLWA 2BR7A 3U8LA 4UM1A 2BG9A 3EAMA 2YN6A 2BYQA 3EI0A 2BG9B 4HFBA 5HEHA 2XQ5A 3ZDGA 2UZ6A 4HFDA 5L4HA 5J5IA 2X00A 5J0ZA 3UU8A 2XZ6A 3UU5A 2YOEA 4D01A 3SH1A 3UUBA 2QC1B 2WNJA 4QH1A 4QH4A 2YMEA 4Z90A 3RIFA 3RQWA 3UU6A 3WTKA 4ZZCA 3WTHA 3WIPA 5HCJA 5BW2A 4UXUA 5LG3A 3RQUA 2XQ9A 2XZ5A 4LMJA 5AFKA 2BJ0A 3U8KA 5J5FA 3IGQA 2BG9E 1UV6A 3SQ9A 2XYSA 3TLSA 4HQPA 4UY2A 4ZR6A 3C84A 2BYRA 2Y58A 5AFMA 5AFMB 4AFGA 2X00D 4COFA 1UX2A 4IL9A 5AINA 5J5HA 4TNWA 4A98A 4EZ1A 4UM3P 4XHEA 4Z91A 3EHZA 4ZK4A 5KE4A 5IUXA 2PGZA 3WTIA 4ILBA 2BYNA 2W8GA 3TLUA 3UU3A 4AFHA 3WTOA 2YMDA 3SIOA 5HEJA 2XQ4A 2XQ6A 3PEOA 4ILCA 4PIRA 2XQAA 5CFBA 4ZZBA 3UU4A 4HFCA 3P50A 3T4MA 3U8NA 5AFNA 2BYSA 2YKSA 2WNLA 4LMLA 4FRRA 3GUAA 4X5TA 3P4WA 5AFJA 2XQ7A 4QABA 2ZJUA 4TWFA 3UQ4A 4A97A 2Y56A 2PH9A 5LXBA 4QH5A 2WN9A 3ZKRA 2XQ8A 3WTMA 4NPPA 5L47A 4B5DA 5FJVA 5HEUA 5BRXA 5JMEA 2W8FA 3RIAA 2WNCA 5HEGA 3JAEA 4ALXA 3RHWA 2XNVA 5SYOA 2Y57A 4QAAA 2Y54A 2WZYA 4IL4A 3U8MA 3PMZA 5CO5A 3C79A 3WTLA 4F8HA 4UM3S 2XNTA 1UW6A 5TVCA 3UQ7A 3TLVA 2VL0A 4XK9A 5AFLA 2XNUA 4ZRUA 3RI5A 3WTJA 3LSVA 4QACA 4TWHA 2XQ3A 2BG9C 3TLTA 5L4EA 3SQ6A 3JAFA 4HFEA 4DBMA 3U8JA 3JADA 5HEOA 4BQTA 4WV9A 2BYPA 4HFHA 5HCMA 3WTNA 2Y7YA 2C9TA 4HFIA 4UM3A 3ZDHA 4ZK1A 4AFTA 4ZJSA 2BR8A 4IREA 4TWDA 1I9BA 5KZUA 2XYTA 4TNVA 4ZJTA 5AFHA 5J5GA 4NZBA 2ZJVA 4LMKA
chains in the Genus database with same CATH topology
4ILAA 5BP0A 4BFQA 3TLWA 2BR7A 3U8LA 4UM1A 2BG9A 3EAMA 2YN6A 2BYQA 3EI0A 2BG9B 4HFBA 5HEHA 2XQ5A 3ZDGA 2UZ6A 4HFDA 5L4HA 5J5IA 2X00A 5J0ZA 3UU8A 2XZ6A 3UU5A 2YOEA 4D01A 3SH1A 3UUBA 2QC1B 2WNJA 4QH1A 4QH4A 2YMEA 4Z90A 3RIFA 3RQWA 3UU6A 3WTKA 4ZZCA 3WTHA 3WIPA 5HCJA 5BW2A 4UXUA 5LG3A 3RQUA 2XQ9A 2XZ5A 4LMJA 5AFKA 2BJ0A 3U8KA 5J5FA 3IGQA 2BG9E 1UV6A 3SQ9A 2XYSA 3TLSA 4HQPA 4UY2A 4ZR6A 3C84A 2BYRA 2Y58A 5AFMA 5AFMB 4AFGA 2X00D 4COFA 1UX2A 4IL9A 5AINA 5J5HA 4TNWA 4A98A 4EZ1A 4UM3P 4XHEA 4Z91A 3EHZA 4ZK4A 5KE4A 5IUXA 2PGZA 3WTIA 4ILBA 2BYNA 2W8GA 3TLUA 3UU3A 4AFHA 3WTOA 2YMDA 3SIOA 5HEJA 2XQ4A 2XQ6A 3PEOA 4ILCA 4PIRA 2XQAA 5CFBA 4ZZBA 3UU4A 4HFCA 3P50A 3T4MA 3U8NA 5AFNA 2BYSA 2YKSA 2WNLA 4LMLA 4FRRA 3GUAA 4X5TA 3P4WA 5AFJA 2XQ7A 4QABA 2ZJUA 4TWFA 3UQ4A 4A97A 2Y56A 2PH9A 5LXBA 4QH5A 2WN9A 3ZKRA 2XQ8A 3WTMA 4NPPA 5L47A 4B5DA 5FJVA 5HEUA 5BRXA 5JMEA 2W8FA 3RIAA 2WNCA 5HEGA 3JAEA 4ALXA 3RHWA 2XNVA 5SYOA 2Y57A 4QAAA 2Y54A 2WZYA 4IL4A 3U8MA 3PMZA 5CO5A 3C79A 3WTLA 4F8HA 4UM3S 2XNTA 1UW6A 5TVCA 3UQ7A 3TLVA 2VL0A 4XK9A 5AFLA 2XNUA 4ZRUA 3RI5A 3WTJA 3LSVA 4QACA 4TWHA 2XQ3A 2BG9C 3TLTA 5L4EA 3SQ6A 3JAFA 4HFEA 4DBMA 3U8JA 3JADA 5HEOA 4BQTA 4WV9A 2BYPA 4HFHA 5HCMA 3WTNA 2Y7YA 2C9TA 4HFIA 4UM3A 3ZDHA 4ZK1A 4AFTA 4ZJSA 2BR8A 4IREA 4TWDA 1I9BA 5KZUA 2XYTA 4TNVA 4ZJTA 5AFHA 5J5GA 4NZBA 2ZJVA 4LMKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ILA A;  5BP0 A;  4BFQ A;  3TLW A;  2BR7 A;  3U8L A;  4UM1 A;  2BG9 A;  3EAM A;  2YN6 A;  2BYQ A;  3EI0 A;  2BG9 B;  4HFB A;  5HEH A;  2XQ5 A;  3ZDG A;  2UZ6 A;  4HFD A;  5L4H A;  5J5I A;  2X00 A;  5J0Z A;  3UU8 A;  2XZ6 A;  3UU5 A;  2YOE A;  4D01 A;  3SH1 A;  3UUB A;  2QC1 B;  2WNJ A;  4QH1 A;  4QH4 A;  2YME A;  4Z90 A;  3RIF A;  3RQW A;  3UU6 A;  3WTK A;  4ZZC A;  3WTH A;  3WIP A;  5HCJ A;  5BW2 A;  4UXU A;  5LG3 A;  3RQU A;  2XQ9 A;  2XZ5 A;  4LMJ A;  5AFK A;  2BJ0 A;  3U8K A;  5J5F A;  3IGQ A;  2BG9 E;  1UV6 A;  3SQ9 A;  2XYS A;  3TLS A;  4HQP A;  4UY2 A;  4ZR6 A;  3C84 A;  2BYR A;  2Y58 A;  5AFM A;  5AFM B;  4AFG A;  2X00 D;  4COF A;  1UX2 A;  4IL9 A;  5AIN A;  5J5H A;  4TNW A;  4A98 A;  4EZ1 A;  4UM3 P;  4XHE A;  4Z91 A;  3EHZ A;  4ZK4 A;  5KE4 A;  5IUX A;  2PGZ A;  3WTI A;  4ILB A;  2BYN A;  2W8G A;  3TLU A;  3UU3 A;  4AFH A;  3WTO A;  2YMD A;  3SIO A;  5HEJ A;  2XQ4 A;  2XQ6 A;  3PEO A;  4ILC A;  4PIR A;  2XQA A;  5CFB A;  4ZZB A;  3UU4 A;  4HFC A;  3P50 A;  3T4M A;  3U8N A;  5AFN A;  2BYS A;  2YKS A;  2WNL A;  4LML A;  4FRR A;  3GUA A;  4X5T A;  3P4W A;  5AFJ A;  2XQ7 A;  4QAB A;  2ZJU A;  4TWF A;  3UQ4 A;  4A97 A;  2Y56 A;  2PH9 A;  5LXB A;  4QH5 A;  2WN9 A;  3ZKR A;  2XQ8 A;  3WTM A;  4NPP A;  5L47 A;  4B5D A;  5FJV A;  5HEU A;  5BRX A;  5JME A;  2W8F A;  3RIA A;  2WNC A;  5HEG A;  3JAE A;  4ALX A;  3RHW A;  2XNV A;  5SYO A;  2Y57 A;  4QAA A;  2Y54 A;  2WZY A;  4IL4 A;  3U8M A;  3PMZ A;  5CO5 A;  3C79 A;  3WTL A;  4F8H A;  4UM3 S;  2XNT A;  1UW6 A;  5TVC A;  3UQ7 A;  3TLV A;  2VL0 A;  4XK9 A;  5AFL A;  2XNU A;  4ZRU A;  3RI5 A;  3WTJ A;  3LSV A;  4QAC A;  4TWH A;  2XQ3 A;  2BG9 C;  3TLT A;  5L4E A;  3SQ6 A;  3JAF A;  4HFE A;  4DBM A;  3U8J A;  3JAD A;  5HEO A;  4BQT A;  4WV9 A;  2BYP A;  4HFH A;  5HCM A;  3WTN A;  2Y7Y A;  2C9T A;  4HFI A;  4UM3 A;  3ZDH A;  4ZK1 A;  4AFT A;  4ZJS A;  2BR8 A;  4IRE A;  4TWD A;  1I9B A;  5KZU A;  2XYT A;  4TNV A;  4ZJT A;  5AFH A;  5J5G A;  4NZB A;  2ZJV A;  4LMK A; 
#chains in the Genus database with same CATH topology
 4ILA A;  5BP0 A;  4BFQ A;  3TLW A;  2BR7 A;  3U8L A;  4UM1 A;  2BG9 A;  3EAM A;  2YN6 A;  2BYQ A;  3EI0 A;  2BG9 B;  4HFB A;  5HEH A;  2XQ5 A;  3ZDG A;  2UZ6 A;  4HFD A;  5L4H A;  5J5I A;  2X00 A;  5J0Z A;  3UU8 A;  2XZ6 A;  3UU5 A;  2YOE A;  4D01 A;  3SH1 A;  3UUB A;  2QC1 B;  2WNJ A;  4QH1 A;  4QH4 A;  2YME A;  4Z90 A;  3RIF A;  3RQW A;  3UU6 A;  3WTK A;  4ZZC A;  3WTH A;  3WIP A;  5HCJ A;  5BW2 A;  4UXU A;  5LG3 A;  3RQU A;  2XQ9 A;  2XZ5 A;  4LMJ A;  5AFK A;  2BJ0 A;  3U8K A;  5J5F A;  3IGQ A;  2BG9 E;  1UV6 A;  3SQ9 A;  2XYS A;  3TLS A;  4HQP A;  4UY2 A;  4ZR6 A;  3C84 A;  2BYR A;  2Y58 A;  5AFM A;  5AFM B;  4AFG A;  2X00 D;  4COF A;  1UX2 A;  4IL9 A;  5AIN A;  5J5H A;  4TNW A;  4A98 A;  4EZ1 A;  4UM3 P;  4XHE A;  4Z91 A;  3EHZ A;  4ZK4 A;  5KE4 A;  5IUX A;  2PGZ A;  3WTI A;  4ILB A;  2BYN A;  2W8G A;  3TLU A;  3UU3 A;  4AFH A;  3WTO A;  2YMD A;  3SIO A;  5HEJ A;  2XQ4 A;  2XQ6 A;  3PEO A;  4ILC A;  4PIR A;  2XQA A;  5CFB A;  4ZZB A;  3UU4 A;  4HFC A;  3P50 A;  3T4M A;  3U8N A;  5AFN A;  2BYS A;  2YKS A;  2WNL A;  4LML A;  4FRR A;  3GUA A;  4X5T A;  3P4W A;  5AFJ A;  2XQ7 A;  4QAB A;  2ZJU A;  4TWF A;  3UQ4 A;  4A97 A;  2Y56 A;  2PH9 A;  5LXB A;  4QH5 A;  2WN9 A;  3ZKR A;  2XQ8 A;  3WTM A;  4NPP A;  5L47 A;  4B5D A;  5FJV A;  5HEU A;  5BRX A;  5JME A;  2W8F A;  3RIA A;  2WNC A;  5HEG A;  3JAE A;  4ALX A;  3RHW A;  2XNV A;  5SYO A;  2Y57 A;  4QAA A;  2Y54 A;  2WZY A;  4IL4 A;  3U8M A;  3PMZ A;  5CO5 A;  3C79 A;  3WTL A;  4F8H A;  4UM3 S;  2XNT A;  1UW6 A;  5TVC A;  3UQ7 A;  3TLV A;  2VL0 A;  4XK9 A;  5AFL A;  2XNU A;  4ZRU A;  3RI5 A;  3WTJ A;  3LSV A;  4QAC A;  4TWH A;  2XQ3 A;  2BG9 C;  3TLT A;  5L4E A;  3SQ6 A;  3JAF A;  4HFE A;  4DBM A;  3U8J A;  3JAD A;  5HEO A;  4BQT A;  4WV9 A;  2BYP A;  4HFH A;  5HCM A;  3WTN A;  2Y7Y A;  2C9T A;  4HFI A;  4UM3 A;  3ZDH A;  4ZK1 A;  4AFT A;  4ZJS A;  2BR8 A;  4IRE A;  4TWD A;  1I9B A;  5KZU A;  2XYT A;  4TNV A;  4ZJT A;  5AFH A;  5J5G A;  4NZB A;  2ZJV A;  4LMK A; 
#chains in the Genus database with same CATH homology
 4ILA A;  5BP0 A;  4BFQ A;  3TLW A;  2BR7 A;  3U8L A;  4UM1 A;  2BG9 A;  3EAM A;  2YN6 A;  2BYQ A;  3EI0 A;  2BG9 B;  4HFB A;  5HEH A;  2XQ5 A;  3ZDG A;  2UZ6 A;  4HFD A;  5L4H A;  5J5I A;  2X00 A;  5J0Z A;  3UU8 A;  2XZ6 A;  3UU5 A;  2YOE A;  4D01 A;  3SH1 A;  3UUB A;  2QC1 B;  2WNJ A;  4QH1 A;  4QH4 A;  2YME A;  4Z90 A;  3RIF A;  3RQW A;  3UU6 A;  3WTK A;  4ZZC A;  3WTH A;  3WIP A;  5HCJ A;  5BW2 A;  4UXU A;  5LG3 A;  3RQU A;  2XQ9 A;  2XZ5 A;  4LMJ A;  5AFK A;  2BJ0 A;  3U8K A;  5J5F A;  3IGQ A;  2BG9 E;  1UV6 A;  3SQ9 A;  2XYS A;  3TLS A;  4HQP A;  4UY2 A;  4ZR6 A;  3C84 A;  2BYR A;  2Y58 A;  5AFM A;  5AFM B;  4AFG A;  2X00 D;  4COF A;  1UX2 A;  4IL9 A;  5AIN A;  5J5H A;  4TNW A;  4A98 A;  4EZ1 A;  4UM3 P;  4XHE A;  4Z91 A;  3EHZ A;  4ZK4 A;  5KE4 A;  5IUX A;  2PGZ A;  3WTI A;  4ILB A;  2BYN A;  2W8G A;  3TLU A;  3UU3 A;  4AFH A;  3WTO A;  2YMD A;  3SIO A;  5HEJ A;  2XQ4 A;  2XQ6 A;  3PEO A;  4ILC A;  4PIR A;  2XQA A;  5CFB A;  4ZZB A;  3UU4 A;  4HFC A;  3P50 A;  3T4M A;  3U8N A;  5AFN A;  2BYS A;  2YKS A;  2WNL A;  4LML A;  4FRR A;  3GUA A;  4X5T A;  3P4W A;  5AFJ A;  2XQ7 A;  4QAB A;  2ZJU A;  4TWF A;  3UQ4 A;  4A97 A;  2Y56 A;  2PH9 A;  5LXB A;  4QH5 A;  2WN9 A;  3ZKR A;  2XQ8 A;  3WTM A;  4NPP A;  5L47 A;  4B5D A;  5FJV A;  5HEU A;  5BRX A;  5JME A;  2W8F A;  3RIA A;  2WNC A;  5HEG A;  3JAE A;  4ALX A;  3RHW A;  2XNV A;  5SYO A;  2Y57 A;  4QAA A;  2Y54 A;  2WZY A;  4IL4 A;  3U8M A;  3PMZ A;  5CO5 A;  3C79 A;  3WTL A;  4F8H A;  4UM3 S;  2XNT A;  1UW6 A;  5TVC A;  3UQ7 A;  3TLV A;  2VL0 A;  4XK9 A;  5AFL A;  2XNU A;  4ZRU A;  3RI5 A;  3WTJ A;  3LSV A;  4QAC A;  4TWH A;  2XQ3 A;  2BG9 C;  3TLT A;  5L4E A;  3SQ6 A;  3JAF A;  4HFE A;  4DBM A;  3U8J A;  3JAD A;  5HEO A;  4BQT A;  4WV9 A;  2BYP A;  4HFH A;  5HCM A;  3WTN A;  2Y7Y A;  2C9T A;  4HFI A;  4UM3 A;  3ZDH A;  4ZK1 A;  4AFT A;  4ZJS A;  2BR8 A;  4IRE A;  4TWD A;  1I9B A;  5KZU A;  2XYT A;  4TNV A;  4ZJT A;  5AFH A;  5J5G A;  4NZB A;  2ZJV A;  4LMK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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