2W8MA

Structure of d212, a nuclease from a fusselovirus.
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
189
structure length
165
Chain Sequence
ILPTVGLGREYLVLGKLLISLSKWRAKGLIDFDVYLYEYYKGLEDKYDLTLYIRAKDSYYPLLWIDITGSSWTEEQGESIYAILSVKVETAKKYDVLGRVFFIHYNDTEDKLKCISALQILNLERQNKIKKDKSEYYLIPTSYWKNLTELRIALRGFYQSFKEYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ORF D212
publication title The crystal structure of D212 from sulfolobus spindle-shaped virus ragged hills reveals a new member of the PD-(D/E)XK nuclease superfamily.
pubmed doi rcsb
source organism Sulfolobus virus ragged hills
total genus 50
structure length 165
sequence length 189
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF12187 VirArc_Nuclease Viral/Archaeal nuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.50 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2w8mA00
2W8MA
chains in the Genus database with same CATH superfamily
1RLVA 2FLCA 2CZRA 4G6VA 3FOVA 3P1YA 2INBA 2FL3A 2OKFA 1OB8A 1GEFA 3P1ZB 1XMXA 4G6UA 4E6ZA 2WIWA 1RZNA 3P1ZA 3IEYB 2GJWA 2ZYZB 3IEYA 2FKHB 3AJVB 1A79A 2EO0A 2ZYZA 2W8MA 2WJ0A 3AJVA 1R0VA 4LQEA 1UWVA 2IXSA 1F1ZA 1YNMA 2FKCA 2DBSA 4TKDA 1ZP7A 3DNXA 2BH2A 2WCZA 2OSTA 4DAVA 2GW6A 4DA2A 3BT7A 4ZQUA 4TKKA 2VS1A 2CV8A 1OB9A 1Y88A 4QBLA 1R11A 2WIZA 4QBOA 1HH1A 2JJQA 2WCWA 2Z0RA 2FCOA 4DAPA 3IF0X 5FDKA 1IPIA 2VLDA 1T0FA 1Y1OA 4EV1A 4QBNA
chains in the Genus database with same CATH topology
1RLVA 2FLCA 2CZRA 4G6VA 3FOVA 3P1YA 2INBA 2FL3A 2OKFA 1OB8A 1GEFA 3P1ZB 1XMXA 4G6UA 4E6ZA 2WIWA 1RZNA 3P1ZA 3IEYB 2GJWA 2ZYZB 3IEYA 2FKHB 3AJVB 1A79A 2EO0A 2ZYZA 2W8MA 2WJ0A 3AJVA 1R0VA 4LQEA 1UWVA 2IXSA 1F1ZA 1YNMA 2FKCA 2DBSA 4TKDA 1ZP7A 3DNXA 2BH2A 2WCZA 2OSTA 4DAVA 2GW6A 4DA2A 3BT7A 4ZQUA 4TKKA 2VS1A 2CV8A 1OB9A 1Y88A 4QBLA 1R11A 2WIZA 4QBOA 1HH1A 2JJQA 2WCWA 2Z0RA 2FCOA 4DAPA 3IF0X 5FDKA 1IPIA 2VLDA 1T0FA 1Y1OA 4EV1A 4QBNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W8M A; 
#chains in the Genus database with same CATH topology
 1RLV A;  2FLC A;  2CZR A;  4G6V A;  3FOV A;  3P1Y A;  2INB A;  2FL3 A;  2OKF A;  1OB8 A;  1GEF A;  3P1Z B;  1XMX A;  4G6U A;  4E6Z A;  2WIW A;  1RZN A;  3P1Z A;  3IEY B;  2GJW A;  2ZYZ B;  3IEY A;  2FKH B;  3AJV B;  1A79 A;  2EO0 A;  2ZYZ A;  2W8M A;  2WJ0 A;  3AJV A;  1R0V A;  4LQE A;  1UWV A;  2IXS A;  1F1Z A;  1YNM A;  2FKC A;  2DBS A;  4TKD A;  1ZP7 A;  3DNX A;  2BH2 A;  2WCZ A;  2OST A;  4DAV A;  2GW6 A;  4DA2 A;  3BT7 A;  4ZQU A;  4TKK A;  2VS1 A;  2CV8 A;  1OB9 A;  1Y88 A;  4QBL A;  1R11 A;  2WIZ A;  4QBO A;  1HH1 A;  2JJQ A;  2WCW A;  2Z0R A;  2FCO A;  4DAP A;  3IF0 X;  5FDK A;  1IPI A;  2VLD A;  1T0F A;  1Y1O A;  4EV1 A;  4QBN A; 
#chains in the Genus database with same CATH homology
 1RLV A;  2FLC A;  2CZR A;  4G6V A;  3FOV A;  3P1Y A;  2INB A;  2FL3 A;  2OKF A;  1OB8 A;  1GEF A;  3P1Z B;  1XMX A;  4G6U A;  4E6Z A;  2WIW A;  1RZN A;  3P1Z A;  3IEY B;  2GJW A;  2ZYZ B;  3IEY A;  2FKH B;  3AJV B;  1A79 A;  2EO0 A;  2ZYZ A;  2W8M A;  2WJ0 A;  3AJV A;  1R0V A;  4LQE A;  1UWV A;  2IXS A;  1F1Z A;  1YNM A;  2FKC A;  2DBS A;  4TKD A;  1ZP7 A;  3DNX A;  2BH2 A;  2WCZ A;  2OST A;  4DAV A;  2GW6 A;  4DA2 A;  3BT7 A;  4ZQU A;  4TKK A;  2VS1 A;  2CV8 A;  1OB9 A;  1Y88 A;  4QBL A;  1R11 A;  2WIZ A;  4QBO A;  1HH1 A;  2JJQ A;  2WCW A;  2Z0R A;  2FCO A;  4DAP A;  3IF0 X;  5FDK A;  1IPI A;  2VLD A;  1T0F A;  1Y1O A;  4EV1 A;  4QBN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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