2W9RA

Structural basis of n-end rule substrate recognition in escherichia coli by the clpap adaptor protein clps
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
97
structure length
97
Chain Sequence
QLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKAGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of N-End Rule Substrate Recognition in Escherichia Coli by the Clpap Adaptor Protein Clps.
pubmed doi rcsb
molecule tags Chaperone
source organism Escherichia coli
molecule keywords ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS
total genus 27
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2009-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 2w9rA00
1R6OC 3GQ0A 4YJMA 1LZWA 1R6QC 1MBUC 3O1FB 3G19A 1CTFA 2WA9A 2WA8A 1MBVB 4YKAA 3GQ1A 1DD3A 3DNJA 1RQUA 3GW1A 4YJXA 2W9RA 1DD4A 3G3PA 3G1BA 1RQVA 3O2BA 1MBXC 1RQSA 3O1FA 3O2HA 3O2OA 1MG9A
chains in the Genus database with same CATH superfamily
1VQMW 3CMEW 1MBUC 1JJ2V 1N8RX 3W7WA 1W2BV 3G6EW 3G19A 1CTFA 4WFNW 1BXYA 5DM6W 3I56W 5GW7A 4IOCW 3GQ1A 3CCUW 1YIJW 1DD3A 3DNJA 1RQUA 3CCLW 4YJXA 1M90X 1VQKW 1YJ9W 1K73X 2W9RA 5GAHa 3ZG5A 1VQ7W 3W7XA 1KC8X 1MBXC 2QA4W 1MWUA 3CCSW 3CXCV 1R6OC 3W7TA 3CCJW 1R6QC 1Q86X 1VQNW 3J7ZZ 2WA9A 4WFAW 4BL3A 5M18A 1VQOW 4WCEW 2OTJW 1YJWW 1MWSA 4YKAA 1NJIX 1YITW 1VQ9W 1VQQA 4CJNA 4IOAW 1VQPW 2QEXW 1RQVA 4WF9W 1VQ6W 1VQ5W 1RQSA 3D3IA 4CPKA 3CC2W 3G4SW 3O2OA 5GADa 3OW2V 3CF5W 4YJMA 1LZWA 3CCQW 1K8AX 1MWTA 4IO9W 5M19A 2WA8A 1VQ4W 1MBVB 5M1AA 3CC4W 1K9MX 2ZJPW 4UY8Z 3CD6W 3G1BA 3CCEW 1YJNW 1KD1X 1QVFV 1QVGV 2ZJRW 1YHQW 3CCMW 3PIOW 3CCRW 1KQSV 3DLLW 1Q81X 5GAGa 3PIPW 3W7SA 3GQ0A 3ZFZA 3CCVW 3CC7W 2ZJQW 1VQ8W 1MWRA 3O1FB 5GAEa 4U67W 4BL2A 3GW1A 1M1KX 3I55W 1DD4A 3G3PA 3CMAW 1YI2W 5JVGW 1Q82X 1S72W 1Q7YX 1VQLW 4WFBW 3O2BA 2OTLW 3O1FA 5JVHW 3ZG0A 3O2HA 5HL7W 3CPWV 3G71W 1MG9A 3W7UA 4DKIA 5CA3A 5DM7W
chains in the Genus database with same CATH topology
1R6OC 3GQ0A 4YJMA 1LZWA 1R6QC 1MBUC 3O1FB 3G19A 1CTFA 2WA9A 2WA8A 1MBVB 4YKAA 3GQ1A 1DD3A 3DNJA 1RQUA 3GW1A 4YJXA 2W9RA 1DD4A 3G3PA 3G1BA 1RQVA 3O2BA 1MBXC 1RQSA 3O1FA 3O2HA 3O2OA 1MG9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R6O C;  3GQ0 A;  4YJM A;  1LZW A;  1R6Q C;  1MBU C;  3O1F B;  3G19 A;  1CTF A;  2WA9 A;  2WA8 A;  1MBV B;  4YKA A;  3GQ1 A;  1DD3 A;  3DNJ A;  1RQU A;  3GW1 A;  4YJX A;  2W9R A;  1DD4 A;  3G3P A;  3G1B A;  1RQV A;  3O2B A;  1MBX C;  1RQS A;  3O1F A;  3O2H A;  3O2O A;  1MG9 A; 
#chains in the Genus database with same CATH topology
 1VQM W;  3CME W;  1MBU C;  1JJ2 V;  1N8R X;  3W7W A;  1W2B V;  3G6E W;  3G19 A;  1CTF A;  4WFN W;  1BXY A;  5DM6 W;  3I56 W;  5GW7 A;  4IOC W;  3GQ1 A;  3CCU W;  1YIJ W;  1DD3 A;  3DNJ A;  1RQU A;  3CCL W;  4YJX A;  1M90 X;  1VQK W;  1YJ9 W;  1K73 X;  2W9R A;  5GAH a;  3ZG5 A;  1VQ7 W;  3W7X A;  1KC8 X;  1MBX C;  2QA4 W;  1MWU A;  3CCS W;  3CXC V;  1R6O C;  3W7T A;  3CCJ W;  1R6Q C;  1Q86 X;  1VQN W;  3J7Z Z;  2WA9 A;  4WFA W;  4BL3 A;  5M18 A;  1VQO W;  4WCE W;  2OTJ W;  1YJW W;  1MWS A;  4YKA A;  1NJI X;  1YIT W;  1VQ9 W;  1VQQ A;  4CJN A;  4IOA W;  1VQP W;  2QEX W;  1RQV A;  4WF9 W;  1VQ6 W;  1VQ5 W;  1RQS A;  3D3I A;  4CPK A;  3CC2 W;  3G4S W;  3O2O A;  5GAD a;  3OW2 V;  3CF5 W;  4YJM A;  1LZW A;  3CCQ W;  1K8A X;  1MWT A;  4IO9 W;  5M19 A;  2WA8 A;  1VQ4 W;  1MBV B;  5M1A A;  3CC4 W;  1K9M X;  2ZJP W;  4UY8 Z;  3CD6 W;  3G1B A;  3CCE W;  1YJN W;  1KD1 X;  1QVF V;  1QVG V;  2ZJR W;  1YHQ W;  3CCM W;  3PIO W;  3CCR W;  1KQS V;  3DLL W;  1Q81 X;  5GAG a;  3PIP W;  3W7S A;  3GQ0 A;  3ZFZ A;  3CCV W;  3CC7 W;  2ZJQ W;  1VQ8 W;  1MWR A;  3O1F B;  5GAE a;  4U67 W;  4BL2 A;  3GW1 A;  1M1K X;  3I55 W;  1DD4 A;  3G3P A;  3CMA W;  1YI2 W;  5JVG W;  1Q82 X;  1S72 W;  1Q7Y X;  1VQL W;  4WFB W;  3O2B A;  2OTL W;  3O1F A;  5JVH W;  3ZG0 A;  3O2H A;  5HL7 W;  3CPW V;  3G71 W;  1MG9 A;  3W7U A;  4DKI A;  5CA3 A;  5DM7 W; 
#chains in the Genus database with same CATH homology
 1R6O C;  3GQ0 A;  4YJM A;  1LZW A;  1R6Q C;  1MBU C;  3O1F B;  3G19 A;  1CTF A;  2WA9 A;  2WA8 A;  1MBV B;  4YKA A;  3GQ1 A;  1DD3 A;  3DNJ A;  1RQU A;  3GW1 A;  4YJX A;  2W9R A;  1DD4 A;  3G3P A;  3G1B A;  1RQV A;  3O2B A;  1MBX C;  1RQS A;  3O1F A;  3O2H A;  3O2O A;  1MG9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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