2WA5A

Crystal structure of human filamin b actin binding domain at 1.9 angstroms resolution
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
243
structure length
237
Chain Sequence
MAPVTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords FILAMIN-B
publication title Disease-Associated Substitutions in the Filamin B Actin Binding Domain Confer Enhanced Actin Binding Affinity in the Absence of Major Structural Disturbance: Insights from the Crystal Structures of Filamin B Actin Binding Domains.
pubmed doi rcsb
source organism Homo sapiens
total genus 82
structure length 237
sequence length 243
ec nomenclature
pdb deposition date 2009-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2wa5A02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2wa5A01
3F7PA 3JARM 2DK9A 3HOPA 4Q57B 3HORA 1PA7A 4EDNA 1UEGA 1SH5A 2VZCA 2VZDA 1WKUA 5A38A 1WYNA 2D86A 1SH6A 2WA7A 2D89A 1BHDA 1P2XA 1VKAA 1BKRA 2E9KA 3KMWB 1WYLA 5A37A 4TXIA 1RT8A 4Q59A 3HOCA 2EYIA 2K3SA 3JALM 1V5KA 2QJXA 1P5SA 3CO1A 1WYOA 4EDLA 4TXKA 2D88A 1WYMA 3I6XA 2L3GA 1WYPA 5BVRA 2VZGB 1TJTA 1QAGA 2YRNA 1MB8A 5A36A 4Q58A 2EYNA 1AOAA 1WYRA 3REPB 5L0OA 2JV9A 2RR8A 1PXYA 2VZIB 3FERA 1UJOA 2EE7A 2QJZA 2WFNA 5A4BA 4EDMA 1WJOA 5J8EA 3KY9A 1AA2A 1WYQA 2K2RA 3KMUB 2D85A 2WA5A 3JAKM 4B7LA 2D87A 1WIXA 1DXXA 2R0OA 2WA6A 2R8UA 1H67A
chains in the Genus database with same CATH superfamily
3F7PA 3JARM 2HL8A 2DK9A 3HOPA 4Q57B 3HORA 1PA7A 4EDNA 1UEGA 1SH5A 2VZCA 2VZDA 1WKUA 5A38A 1WYNA 3EAYA 2D86A 1SH6A 4LVRA 2WA7A 2D89A 1BHDA 2HL9A 1P2XA 1VKAA 1BKRA 2EQOA 2E9KA 3KMWB 1WYLA 5A37A 4TXIA 4DDPA 2HKPA 1RT8A 4Q59A 3HOCA 2EYIA 2K3SA 2WE6A 3JALM 1V5KA 2WDTA 1EUVA 2QJXA 1P5SA 3CO1A 1WYOA 4EDLA 4TXKA 2D88A 1WYMA 3I6XA 2L3GA 1WYPA 5BVRA 2VZGB 1TJTA 1QAGA 2YRNA 3VP7A 1MB8A 2IGPA 5A36A 4Q58A 2EYNA 1AOAA 1WYRA 3REPB 5L0OA 2JV9A 2RR8A 2VE7C 1PXYA 2VZIB 3FERA 1UJOA 2EE7A 2QJZA 2WFNA 5A4BA 4EDMA 1WJOA 5J8EA 5FMTA 3KY9A 1AA2A 1WYQA 2K2RA 3KMUB 2D85A 2WA5A 2VE7A 4LVPA 3JAKM 4B7LA 2D87A 1WIXA 1DXXA 2R0OA 2WA6A 2R8UA 1H67A 5FMUA
chains in the Genus database with same CATH topology
3F7PA 3JARM 2DK9A 3HOPA 4Q57B 3HORA 1PA7A 4EDNA 1UEGA 1SH5A 2VZCA 2VZDA 1WKUA 5A38A 1WYNA 2D86A 1SH6A 2WA7A 2D89A 1BHDA 1P2XA 1VKAA 1BKRA 2E9KA 3KMWB 1WYLA 5A37A 4TXIA 1RT8A 4Q59A 3HOCA 2EYIA 2K3SA 3JALM 1V5KA 2QJXA 1P5SA 3CO1A 1WYOA 4EDLA 4TXKA 2D88A 1WYMA 3I6XA 2L3GA 1WYPA 5BVRA 2VZGB 1TJTA 1QAGA 2YRNA 1MB8A 5A36A 4Q58A 2EYNA 1AOAA 1WYRA 3REPB 5L0OA 2JV9A 2RR8A 1PXYA 2VZIB 3FERA 1UJOA 2EE7A 2QJZA 2WFNA 5A4BA 4EDMA 1WJOA 5J8EA 3KY9A 1AA2A 1WYQA 2K2RA 3KMUB 2D85A 2WA5A 3JAKM 4B7LA 2D87A 1WIXA 1DXXA 2R0OA 2WA6A 2R8UA 1H67A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F7P A;  3JAR M;  2DK9 A;  3HOP A;  4Q57 B;  3HOR A;  1PA7 A;  4EDN A;  1UEG A;  1SH5 A;  2VZC A;  2VZD A;  1WKU A;  5A38 A;  1WYN A;  2D86 A;  1SH6 A;  2WA7 A;  2D89 A;  1BHD A;  1P2X A;  1VKA A;  1BKR A;  2E9K A;  3KMW B;  1WYL A;  5A37 A;  4TXI A;  1RT8 A;  4Q59 A;  3HOC A;  2EYI A;  2K3S A;  3JAL M;  1V5K A;  2QJX A;  1P5S A;  3CO1 A;  1WYO A;  4EDL A;  4TXK A;  2D88 A;  1WYM A;  3I6X A;  2L3G A;  1WYP A;  5BVR A;  2VZG B;  1TJT A;  1QAG A;  2YRN A;  1MB8 A;  5A36 A;  4Q58 A;  2EYN A;  1AOA A;  1WYR A;  3REP B;  5L0O A;  2JV9 A;  2RR8 A;  1PXY A;  2VZI B;  3FER A;  1UJO A;  2EE7 A;  2QJZ A;  2WFN A;  5A4B A;  4EDM A;  1WJO A;  5J8E A;  3KY9 A;  1AA2 A;  1WYQ A;  2K2R A;  3KMU B;  2D85 A;  2WA5 A;  3JAK M;  4B7L A;  2D87 A;  1WIX A;  1DXX A;  2R0O A;  2WA6 A;  2R8U A;  1H67 A; 
#chains in the Genus database with same CATH topology
 3F7P A;  3JAR M;  2HL8 A;  2DK9 A;  3HOP A;  4Q57 B;  3HOR A;  1PA7 A;  4EDN A;  1UEG A;  1SH5 A;  2VZC A;  2VZD A;  1WKU A;  5A38 A;  1WYN A;  3EAY A;  2D86 A;  1SH6 A;  4LVR A;  2WA7 A;  2D89 A;  1BHD A;  2HL9 A;  1P2X A;  1VKA A;  1BKR A;  2EQO A;  2E9K A;  3KMW B;  1WYL A;  5A37 A;  4TXI A;  4DDP A;  2HKP A;  1RT8 A;  4Q59 A;  3HOC A;  2EYI A;  2K3S A;  2WE6 A;  3JAL M;  1V5K A;  2WDT A;  1EUV A;  2QJX A;  1P5S A;  3CO1 A;  1WYO A;  4EDL A;  4TXK A;  2D88 A;  1WYM A;  3I6X A;  2L3G A;  1WYP A;  5BVR A;  2VZG B;  1TJT A;  1QAG A;  2YRN A;  3VP7 A;  1MB8 A;  2IGP A;  5A36 A;  4Q58 A;  2EYN A;  1AOA A;  1WYR A;  3REP B;  5L0O A;  2JV9 A;  2RR8 A;  2VE7 C;  1PXY A;  2VZI B;  3FER A;  1UJO A;  2EE7 A;  2QJZ A;  2WFN A;  5A4B A;  4EDM A;  1WJO A;  5J8E A;  5FMT A;  3KY9 A;  1AA2 A;  1WYQ A;  2K2R A;  3KMU B;  2D85 A;  2WA5 A;  2VE7 A;  4LVP A;  3JAK M;  4B7L A;  2D87 A;  1WIX A;  1DXX A;  2R0O A;  2WA6 A;  2R8U A;  1H67 A;  5FMU A; 
#chains in the Genus database with same CATH homology
 3F7P A;  3JAR M;  2DK9 A;  3HOP A;  4Q57 B;  3HOR A;  1PA7 A;  4EDN A;  1UEG A;  1SH5 A;  2VZC A;  2VZD A;  1WKU A;  5A38 A;  1WYN A;  2D86 A;  1SH6 A;  2WA7 A;  2D89 A;  1BHD A;  1P2X A;  1VKA A;  1BKR A;  2E9K A;  3KMW B;  1WYL A;  5A37 A;  4TXI A;  1RT8 A;  4Q59 A;  3HOC A;  2EYI A;  2K3S A;  3JAL M;  1V5K A;  2QJX A;  1P5S A;  3CO1 A;  1WYO A;  4EDL A;  4TXK A;  2D88 A;  1WYM A;  3I6X A;  2L3G A;  1WYP A;  5BVR A;  2VZG B;  1TJT A;  1QAG A;  2YRN A;  1MB8 A;  5A36 A;  4Q58 A;  2EYN A;  1AOA A;  1WYR A;  3REP B;  5L0O A;  2JV9 A;  2RR8 A;  1PXY A;  2VZI B;  3FER A;  1UJO A;  2EE7 A;  2QJZ A;  2WFN A;  5A4B A;  4EDM A;  1WJO A;  5J8E A;  3KY9 A;  1AA2 A;  1WYQ A;  2K2R A;  3KMU B;  2D85 A;  2WA5 A;  3JAK M;  4B7L A;  2D87 A;  1WIX A;  1DXX A;  2R0O A;  2WA6 A;  2R8U A;  1H67 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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