2WA9A

Structural basis of n-end rule substrate recognition in escherichia coli by the clpap adaptor protein clps - trp peptide structure
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
SMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKAGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Peptide binding protein
molecule keywords ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS
publication title Structural Basis of N-End Rule Substrate Recognition in Escherichia Coli by the Clpap Adaptor Protein Clps.
pubmed doi rcsb
source organism Escherichia coli
total genus 25
structure length 83
sequence length 83
chains with identical sequence B, C, D, E, F, G
ec nomenclature
pdb deposition date 2009-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 2wa9A00
1MBUC 3O2HA 3GW1A 1DD3A 1CTFA 1R6OC 1R6QC 3O2OA 3G19A 3GQ1A 1DD4A 2WA8A 4YJMA 1RQSA 1RQVA 3GQ0A 3DNJA 3G3PA 3O1FA 1MG9A 2WA9A 4YJXA 1RQUA 4YKAA 2W9RA 1MBXC 3O2BA 3O1FB 1MBVB 3G1BA 1LZWA
chains in the Genus database with same CATH superfamily
1MBUC 1YHQW 3ZG0A 2OTLW 4CPKA 3ZFZA 3D3IA 4IO9W 1R6QC 1N8RX 5JVGW 1VQ5W 1M90X 5GADa 3CC4W 1VQ4W 3W7TA 4YJMA 3G71W 1VQKW 3GQ0A 1Q86X 5M19A 3DNJA 3O1FA 2QA4W 1K73X 5GAHa 3CCVW 1QVFV 3W7WA 3G6EW 1RQUA 2W9RA 1S72W 3PIOW 3O2BA 5CA3A 3OW2V 1VQ9W 1LZWA 1Q82X 1DD3A 3W7SA 5DM7W 1YIJW 3ZG5A 5DM6W 4BL3A 1DD4A 1K8AX 3G4SW 3CCRW 1YI2W 1M1KX 3CCJW 1MG9A 3CCSW 3W7XA 4BL2A 5GW7A 3CC7W 3PIPW 4YKAA 3CPWV 4IOCW 3CMEW 1MWSA 1YJNW 3W7UA 4WFBW 1MBXC 1KC8X 1VQQA 1MWUA 1VQLW 3CCMW 5JVHW 1MBVB 3G1BA 1JJ2V 3CF5W 3O2HA 1VQ7W 3CCEW 3I56W 1K9MX 4IOAW 1VQMW 1NJIX 2ZJQW 3GQ1A 2WA8A 4WCEW 1VQ8W 4DKIA 1BXYA 1RQSA 1YJWW 3CCLW 3J7ZZ 3CMAW 3G3PA 4WF9W 1W2BV 5M1AA 1KQSV 1VQPW 2QEXW 4YJXA 5GAEa 2ZJRW 1YITW 1VQNW 3CCUW 1MWRA 3CC2W 1Q81X 3CD6W 2ZJPW 4WFAW 1Q7YX 5HL7W 3GW1A 4U67W 1CTFA 1R6OC 4UY8Z 1YJ9W 5M18A 3O2OA 3G19A 3CXCV 3CCQW 3DLLW 1KD1X 1RQVA 1VQOW 5GAGa 4CJNA 2WA9A 2OTJW 4WFNW 1MWTA 1QVGV 1VQ6W 3O1FB 3I55W
chains in the Genus database with same CATH topology
1MBUC 3O2HA 3GW1A 1DD3A 1CTFA 1R6OC 1R6QC 3O2OA 3G19A 3GQ1A 1DD4A 2WA8A 4YJMA 1RQSA 1RQVA 3GQ0A 3DNJA 3G3PA 3O1FA 1MG9A 2WA9A 4YJXA 1RQUA 4YKAA 2W9RA 1MBXC 3O2BA 3O1FB 1MBVB 3G1BA 1LZWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MBU C;  3O2H A;  3GW1 A;  1DD3 A;  1CTF A;  1R6O C;  1R6Q C;  3O2O A;  3G19 A;  3GQ1 A;  1DD4 A;  2WA8 A;  4YJM A;  1RQS A;  1RQV A;  3GQ0 A;  3DNJ A;  3G3P A;  3O1F A;  1MG9 A;  2WA9 A;  4YJX A;  1RQU A;  4YKA A;  2W9R A;  1MBX C;  3O2B A;  3O1F B;  1MBV B;  3G1B A;  1LZW A; 
#chains in the Genus database with same CATH topology
 1MBU C;  1YHQ W;  3ZG0 A;  2OTL W;  4CPK A;  3ZFZ A;  3D3I A;  4IO9 W;  1R6Q C;  1N8R X;  5JVG W;  1VQ5 W;  1M90 X;  5GAD a;  3CC4 W;  1VQ4 W;  3W7T A;  4YJM A;  3G71 W;  1VQK W;  3GQ0 A;  1Q86 X;  5M19 A;  3DNJ A;  3O1F A;  2QA4 W;  1K73 X;  5GAH a;  3CCV W;  1QVF V;  3W7W A;  3G6E W;  1RQU A;  2W9R A;  1S72 W;  3PIO W;  3O2B A;  5CA3 A;  3OW2 V;  1VQ9 W;  1LZW A;  1Q82 X;  1DD3 A;  3W7S A;  5DM7 W;  1YIJ W;  3ZG5 A;  5DM6 W;  4BL3 A;  1DD4 A;  1K8A X;  3G4S W;  3CCR W;  1YI2 W;  1M1K X;  3CCJ W;  1MG9 A;  3CCS W;  3W7X A;  4BL2 A;  5GW7 A;  3CC7 W;  3PIP W;  4YKA A;  3CPW V;  4IOC W;  3CME W;  1MWS A;  1YJN W;  3W7U A;  4WFB W;  1MBX C;  1KC8 X;  1VQQ A;  1MWU A;  1VQL W;  3CCM W;  5JVH W;  1MBV B;  3G1B A;  1JJ2 V;  3CF5 W;  3O2H A;  1VQ7 W;  3CCE W;  3I56 W;  1K9M X;  4IOA W;  1VQM W;  1NJI X;  2ZJQ W;  3GQ1 A;  2WA8 A;  4WCE W;  1VQ8 W;  4DKI A;  1BXY A;  1RQS A;  1YJW W;  3CCL W;  3J7Z Z;  3CMA W;  3G3P A;  4WF9 W;  1W2B V;  5M1A A;  1KQS V;  1VQP W;  2QEX W;  4YJX A;  5GAE a;  2ZJR W;  1YIT W;  1VQN W;  3CCU W;  1MWR A;  3CC2 W;  1Q81 X;  3CD6 W;  2ZJP W;  4WFA W;  1Q7Y X;  5HL7 W;  3GW1 A;  4U67 W;  1CTF A;  1R6O C;  4UY8 Z;  1YJ9 W;  5M18 A;  3O2O A;  3G19 A;  3CXC V;  3CCQ W;  3DLL W;  1KD1 X;  1RQV A;  1VQO W;  5GAG a;  4CJN A;  2WA9 A;  2OTJ W;  4WFN W;  1MWT A;  1QVG V;  1VQ6 W;  3O1F B;  3I55 W; 
#chains in the Genus database with same CATH homology
 1MBU C;  3O2H A;  3GW1 A;  1DD3 A;  1CTF A;  1R6O C;  1R6Q C;  3O2O A;  3G19 A;  3GQ1 A;  1DD4 A;  2WA8 A;  4YJM A;  1RQS A;  1RQV A;  3GQ0 A;  3DNJ A;  3G3P A;  3O1F A;  1MG9 A;  2WA9 A;  4YJX A;  1RQU A;  4YKA A;  2W9R A;  1MBX C;  3O2B A;  3O1F B;  1MBV B;  3G1B A;  1LZW A; 
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similar chains in the Genus database (?% sequence similarity)
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