2WAQH

The complete structure of the archaeal 13-subunit dna-directed rna polymerase
Total Genus 8
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
74
structure length
74
Chain Sequence
IDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRASDPVARSINAKPGDIIRIIRKSQLYGEVVSYRYVI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription
molecule keywords DNA-DIRECTED RNA POLYMERASE RPO1N SUBUNIT
publication title Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure.
pubmed doi rcsb
total genus 8
structure length 74
sequence length 74
ec nomenclature
pdb deposition date 2009-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 2waqH00
5IYBE 5C44E 3CQZE 2JA6E 2R93E 1I6HE 4QIWH 2NVTE 5M5WE 3S1RE 4A3FE 5IP7E 3S14E 5M5XE 2JA8E 2E2IE 4A3ME 3GTJE 5M3ME 2VUME 5FJ8E 2NVQE 1I3QE 5M3FE 1EIKA 3GTLE 4A3JE 3S1QE 3I4ME 2R7ZE 2R92E 3I4NE 3GTQE 2WAQH 4A3EE 2B63E 5C4XE 3GTKE 5C4JE 3M4OE 1TWCE 3GTME 4C2ME 4A3BE 3GTOE 4C3IE 3HKZH 3S15E 2NVXE 3RZDE 4BBSE 4BBRE 4A3DE 4A3LE 4A3IE 1TWAE 4AYBH 3H3VF 3M3YE 4X6AE 2NVYE 4A93E 3K7AE 2E2JE 4A3KE 4C3HE 3HOVE 4A3GE 2JA5E 3HOZE 2E2HE 1TWHE 2WB1H 3HOUE 5FLME 3S2HE 2PMZH 2JA7E 3FKIE 1Y1VE 2YU9E 1Y1WE 1WCME 4BY7E 5IYDE 4A3CE 4Y7NE 3S16E 3S17E 3HOWE 4BY1E 3PO3E 5C3EE 3PO2E 1TWFE 3S2DE 1K83E 1DZFA 3GTPE 4Y52E 5IYCE 4C3JE 4BXXE 1R9TE 1I50E 3S1NE 5IP9E 3HOYE 1TWGE 2Y0SH 3H0GE 1SFOE 3HOXE 3RZOE 3GTGE 5M5YE 3S1ME
chains in the Genus database with same CATH superfamily
4LK1E 5IYBE 5C44E 4A3IF 3CQZE 2JA6E 2O5JE 1TWAF 3M3YF 2R93E 4X6AF 1I6HE 4QIWH 2NVYF 2NVTE 4A93F 3K7AF 3I4NF 5M5WE 3S1RE 4A3FE 2A69E 5IP7E 3S14E 5M5XE 2E2JF 2E2IE 4A3KF 4G7HE 4A3ME 4LJZE 3GTJE 4OIQE 2JA8E 5M3ME 2VUME 5FJ8E 2NVQE 5E18E 5IPLE 4C3HF 1I3QE 3HOVF 4A3GF 5TMCE 5M3FE 2JA5F 5TMFE 2E2HF 3H3VG 3HOZF 1EIKA 1TWHF 3GTLE 3HOUF 4A3JE 3S1QE 5FLMF 3I4ME 2R7ZE 3S2HF 2R92E 3I4NE 3GTQE 2WAQH 4A3EE 2B63E 3FKIF 2JA7F 5C4XE 1Y1VF 2YU9F 3GTKE 1Y1WF 4G7ZE 5C4JE 1WCMF 4AYBK 2Y0SI 4BY7F 3WODE 4YFKE 3M4OE 1TWCE 4JK1E 1I6VE 5IYDF 2PPBE 3GTME 1YNJK 2WAQK 4C2ME 4A3BE 4A3CF 3S16F 3GTOE 5D4CE 3S17F 3HOWF 4BY1F 4C3IE 3HKZH 4YG2E 5C3EF 3S15E 3PO3F 4GZYE 3PO2F 2NVXE 3RZDE 1TWFF 4YFXE 3S2DF 4BBSE 5D4EE 2A68E 4BBRE 1K83F 4A3DE 4Y52F 3GTPF 4XSXE 4A3LE 3HKZK 4C3JF 5IYCF 4A3IE 4Q4ZE 4BXXF 1R9TF 1I50F 5E17E 1TWAE 4AYBH 2PMZK 3H3VF 4KMUE 3M3YE 4X6AE 2NVYE 3S1NF 4A93E 3K7AE 4XLNE 4ZH4E 5IP9F 3HOYF 2E2JE 1TWGF 4A3KE 4MQ9E 3H0GF 1SFOF 3HOXF 4KN4E 3RZOF 1YNNK 4Q5SE 3GTGF 4Y7NF 5M5YF 3S1MF 4C3HE 5IYBF 5C44F 2JA5E 3HOVE 3HOZE 2E2HE 4A3GE 3CQZF 2JA6F 1TWHE 2R93F 2WB1H 1I6HF 3HOUE 5FLME 2NVTF 3EQLE 3S2HE 2KRXA 5M5WF 3S1RF 2PMZH 4KN7E 4LK0E 3FKIE 4A3FF 2JA7E 5IP7F 1Y1VE 2YU9E 5M5XF 1Y1WE 3S14F 2JA8F 2E2IF 4XSZE 1WCME 4A3MF 3GTJF 5M3MF 2VUMF 4BY7E 5FJ8F 4YFNE 2NVQF 5IYDE 1SMYE 1ZYRE 4A3CE 4Y7NE 4MEXE 1I3QF 5M3FF 2CW0E 3S16E 5D4DE 2A6HE 4XLPE 1IW7E 3S17E 3GTLF 3HOWE 4A3JF 4BY1E 3I4MF 3S1QF 3PO3E 5C3EE 4OINE 4G7OE 2R7ZF 3PO2E 2R92F 3GTQF 4A3EF 4OIOE 1TWFE 5BYHE 2B63F 3S2DE 5C4XF 3GTKF 5C4JF 1K83E 1DZFA 3GTPE 4Y52E 4QIWK 3M4OF 1TWCF 5IYCE 4C3JE 4OIRE 4BXXE 1HQME 1R9TE 1I50E 3GTMF 4C2MF 4A3BF 2A6EE 3S1NE 3GTOF 2BE5E 3DXJE 4LLGE 5IP9E 2WB1I 4C3IF 2O5IE 3S15F 4MEYE 3HOYE 1TWGE 2NVXF 4OIPE 2Y0SH 3RZDF 3H0GE 1SFOE 4BBSF 3HOXE 1QKLA 4BBRF 3RZOE 4A3DF 3GTGE 5M5YE 3S1ME 4A3LF
chains in the Genus database with same CATH topology
5IYBE 5C44E 3CQZE 2JA6E 2R93E 1I6HE 4QIWH 2NVTE 5M5WE 3S1RE 4A3FE 5IP7E 3S14E 5M5XE 2JA8E 2E2IE 4A3ME 3GTJE 5M3ME 2VUME 5FJ8E 2NVQE 1I3QE 5M3FE 1EIKA 3GTLE 4A3JE 3S1QE 3I4ME 2R7ZE 2R92E 3I4NE 3GTQE 2WAQH 4A3EE 2B63E 5C4XE 3GTKE 5C4JE 3M4OE 1TWCE 3GTME 4C2ME 4A3BE 3GTOE 4C3IE 3HKZH 3S15E 2NVXE 3RZDE 4BBSE 4BBRE 4A3DE 4A3LE 4A3IE 1TWAE 4AYBH 3H3VF 3M3YE 4X6AE 2NVYE 4A93E 3K7AE 2E2JE 4A3KE 4C3HE 3HOVE 4A3GE 2JA5E 3HOZE 2E2HE 1TWHE 2WB1H 3HOUE 5FLME 3S2HE 2PMZH 2JA7E 3FKIE 1Y1VE 2YU9E 1Y1WE 1WCME 4BY7E 5IYDE 4A3CE 4Y7NE 3S16E 3S17E 3HOWE 4BY1E 3PO3E 5C3EE 3PO2E 1TWFE 3S2DE 1K83E 1DZFA 3GTPE 4Y52E 5IYCE 4C3JE 4BXXE 1R9TE 1I50E 3S1NE 5IP9E 3HOYE 1TWGE 2Y0SH 3H0GE 1SFOE 3HOXE 3RZOE 3GTGE 5M5YE 3S1ME
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYB E;  5C44 E;  3CQZ E;  2JA6 E;  2R93 E;  1I6H E;  4QIW H;  2NVT E;  5M5W E;  3S1R E;  4A3F E;  5IP7 E;  3S14 E;  5M5X E;  2JA8 E;  2E2I E;  4A3M E;  3GTJ E;  5M3M E;  2VUM E;  5FJ8 E;  2NVQ E;  1I3Q E;  5M3F E;  1EIK A;  3GTL E;  4A3J E;  3S1Q E;  3I4M E;  2R7Z E;  2R92 E;  3I4N E;  3GTQ E;  2WAQ H;  4A3E E;  2B63 E;  5C4X E;  3GTK E;  5C4J E;  3M4O E;  1TWC E;  3GTM E;  4C2M E;  4A3B E;  3GTO E;  4C3I E;  3HKZ H;  3S15 E;  2NVX E;  3RZD E;  4BBS E;  4BBR E;  4A3D E;  4A3L E;  4A3I E;  1TWA E;  4AYB H;  3H3V F;  3M3Y E;  4X6A E;  2NVY E;  4A93 E;  3K7A E;  2E2J E;  4A3K E;  4C3H E;  3HOV E;  4A3G E;  2JA5 E;  3HOZ E;  2E2H E;  1TWH E;  2WB1 H;  3HOU E;  5FLM E;  3S2H E;  2PMZ H;  2JA7 E;  3FKI E;  1Y1V E;  2YU9 E;  1Y1W E;  1WCM E;  4BY7 E;  5IYD E;  4A3C E;  4Y7N E;  3S16 E;  3S17 E;  3HOW E;  4BY1 E;  3PO3 E;  5C3E E;  3PO2 E;  1TWF E;  3S2D E;  1K83 E;  1DZF A;  3GTP E;  4Y52 E;  5IYC E;  4C3J E;  4BXX E;  1R9T E;  1I50 E;  3S1N E;  5IP9 E;  3HOY E;  1TWG E;  2Y0S H;  3H0G E;  1SFO E;  3HOX E;  3RZO E;  3GTG E;  5M5Y E;  3S1M E; 
#chains in the Genus database with same CATH topology
 4LK1 E;  5IYB E;  5C44 E;  4A3I F;  3CQZ E;  2JA6 E;  2O5J E;  1TWA F;  3M3Y F;  2R93 E;  4X6A F;  1I6H E;  4QIW H;  2NVY F;  2NVT E;  4A93 F;  3K7A F;  3I4N F;  5M5W E;  3S1R E;  4A3F E;  2A69 E;  5IP7 E;  3S14 E;  5M5X E;  2E2J F;  2E2I E;  4A3K F;  4G7H E;  4A3M E;  4LJZ E;  3GTJ E;  4OIQ E;  2JA8 E;  5M3M E;  2VUM E;  5FJ8 E;  2NVQ E;  5E18 E;  5IPL E;  4C3H F;  1I3Q E;  3HOV F;  4A3G F;  5TMC E;  5M3F E;  2JA5 F;  5TMF E;  2E2H F;  3H3V G;  3HOZ F;  1EIK A;  1TWH F;  3GTL E;  3HOU F;  4A3J E;  3S1Q E;  5FLM F;  3I4M E;  2R7Z E;  3S2H F;  2R92 E;  3I4N E;  3GTQ E;  2WAQ H;  4A3E E;  2B63 E;  3FKI F;  2JA7 F;  5C4X E;  1Y1V F;  2YU9 F;  3GTK E;  1Y1W F;  4G7Z E;  5C4J E;  1WCM F;  4AYB K;  2Y0S I;  4BY7 F;  3WOD E;  4YFK E;  3M4O E;  1TWC E;  4JK1 E;  1I6V E;  5IYD F;  2PPB E;  3GTM E;  1YNJ K;  2WAQ K;  4C2M E;  4A3B E;  4A3C F;  3S16 F;  3GTO E;  5D4C E;  3S17 F;  3HOW F;  4BY1 F;  4C3I E;  3HKZ H;  4YG2 E;  5C3E F;  3S15 E;  3PO3 F;  4GZY E;  3PO2 F;  2NVX E;  3RZD E;  1TWF F;  4YFX E;  3S2D F;  4BBS E;  5D4E E;  2A68 E;  4BBR E;  1K83 F;  4A3D E;  4Y52 F;  3GTP F;  4XSX E;  4A3L E;  3HKZ K;  4C3J F;  5IYC F;  4A3I E;  4Q4Z E;  4BXX F;  1R9T F;  1I50 F;  5E17 E;  1TWA E;  4AYB H;  2PMZ K;  3H3V F;  4KMU E;  3M3Y E;  4X6A E;  2NVY E;  3S1N F;  4A93 E;  3K7A E;  4XLN E;  4ZH4 E;  5IP9 F;  3HOY F;  2E2J E;  1TWG F;  4A3K E;  4MQ9 E;  3H0G F;  1SFO F;  3HOX F;  4KN4 E;  3RZO F;  1YNN K;  4Q5S E;  3GTG F;  4Y7N F;  5M5Y F;  3S1M F;  4C3H E;  5IYB F;  5C44 F;  2JA5 E;  3HOV E;  3HOZ E;  2E2H E;  4A3G E;  3CQZ F;  2JA6 F;  1TWH E;  2R93 F;  2WB1 H;  1I6H F;  3HOU E;  5FLM E;  2NVT F;  3EQL E;  3S2H E;  2KRX A;  5M5W F;  3S1R F;  2PMZ H;  4KN7 E;  4LK0 E;  3FKI E;  4A3F F;  2JA7 E;  5IP7 F;  1Y1V E;  2YU9 E;  5M5X F;  1Y1W E;  3S14 F;  2JA8 F;  2E2I F;  4XSZ E;  1WCM E;  4A3M F;  3GTJ F;  5M3M F;  2VUM F;  4BY7 E;  5FJ8 F;  4YFN E;  2NVQ F;  5IYD E;  1SMY E;  1ZYR E;  4A3C E;  4Y7N E;  4MEX E;  1I3Q F;  5M3F F;  2CW0 E;  3S16 E;  5D4D E;  2A6H E;  4XLP E;  1IW7 E;  3S17 E;  3GTL F;  3HOW E;  4A3J F;  4BY1 E;  3I4M F;  3S1Q F;  3PO3 E;  5C3E E;  4OIN E;  4G7O E;  2R7Z F;  3PO2 E;  2R92 F;  3GTQ F;  4A3E F;  4OIO E;  1TWF E;  5BYH E;  2B63 F;  3S2D E;  5C4X F;  3GTK F;  5C4J F;  1K83 E;  1DZF A;  3GTP E;  4Y52 E;  4QIW K;  3M4O F;  1TWC F;  5IYC E;  4C3J E;  4OIR E;  4BXX E;  1HQM E;  1R9T E;  1I50 E;  3GTM F;  4C2M F;  4A3B F;  2A6E E;  3S1N E;  3GTO F;  2BE5 E;  3DXJ E;  4LLG E;  5IP9 E;  2WB1 I;  4C3I F;  2O5I E;  3S15 F;  4MEY E;  3HOY E;  1TWG E;  2NVX F;  4OIP E;  2Y0S H;  3RZD F;  3H0G E;  1SFO E;  4BBS F;  3HOX E;  1QKL A;  4BBR F;  3RZO E;  4A3D F;  3GTG E;  5M5Y E;  3S1M E;  4A3L F; 
#chains in the Genus database with same CATH homology
 5IYB E;  5C44 E;  3CQZ E;  2JA6 E;  2R93 E;  1I6H E;  4QIW H;  2NVT E;  5M5W E;  3S1R E;  4A3F E;  5IP7 E;  3S14 E;  5M5X E;  2JA8 E;  2E2I E;  4A3M E;  3GTJ E;  5M3M E;  2VUM E;  5FJ8 E;  2NVQ E;  1I3Q E;  5M3F E;  1EIK A;  3GTL E;  4A3J E;  3S1Q E;  3I4M E;  2R7Z E;  2R92 E;  3I4N E;  3GTQ E;  2WAQ H;  4A3E E;  2B63 E;  5C4X E;  3GTK E;  5C4J E;  3M4O E;  1TWC E;  3GTM E;  4C2M E;  4A3B E;  3GTO E;  4C3I E;  3HKZ H;  3S15 E;  2NVX E;  3RZD E;  4BBS E;  4BBR E;  4A3D E;  4A3L E;  4A3I E;  1TWA E;  4AYB H;  3H3V F;  3M3Y E;  4X6A E;  2NVY E;  4A93 E;  3K7A E;  2E2J E;  4A3K E;  4C3H E;  3HOV E;  4A3G E;  2JA5 E;  3HOZ E;  2E2H E;  1TWH E;  2WB1 H;  3HOU E;  5FLM E;  3S2H E;  2PMZ H;  2JA7 E;  3FKI E;  1Y1V E;  2YU9 E;  1Y1W E;  1WCM E;  4BY7 E;  5IYD E;  4A3C E;  4Y7N E;  3S16 E;  3S17 E;  3HOW E;  4BY1 E;  3PO3 E;  5C3E E;  3PO2 E;  1TWF E;  3S2D E;  1K83 E;  1DZF A;  3GTP E;  4Y52 E;  5IYC E;  4C3J E;  4BXX E;  1R9T E;  1I50 E;  3S1N E;  5IP9 E;  3HOY E;  1TWG E;  2Y0S H;  3H0G E;  1SFO E;  3HOX E;  3RZO E;  3GTG E;  5M5Y E;  3S1M E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...