2WCVA

Crystal structure of bacterial fucu
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
Knots found
sequence length
140
structure length
138
Chain Sequence
MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLPCPDIIRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structures and Enzyme Mechanism of a Dual Fucose Mutarotase/Ribose Pyranase
pubmed doi rcsb
source organism Escherichia coli
molecule tags Isomerase
molecule keywords L-FUCOSE MUTAROTASE
total genus 40
structure length 138
sequence length 140
chains with identical sequence B, C, D, E, F, G, H, I, J
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.1.3.29: L-fucose mutarotase.
pdb deposition date 2009-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05025 RbsD_FucU RbsD / FucU transport protein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1650.10 Alpha Beta 3-Layer(aba) Sandwich RbsD-like fold RbsD-like domain 2wcvA01
1OGEA 3E7NA 1OGCA 1OGFA 4A34A 3P13A 2WCVA 1OGDA 3MVKA 2WCUA 3P12A 2OB5A
chains in the Genus database with same CATH superfamily
1OGEA 3E7NA 1OGCA 1OGFA 4A34A 3P13A 2WCVA 1OGDA 3MVKA 2WCUA 3P12A 2OB5A
chains in the Genus database with same CATH topology
1OGEA 3E7NA 1OGCA 1OGFA 4A34A 3P13A 2WCVA 1OGDA 3MVKA 2WCUA 3P12A 2OB5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OGE A;  3E7N A;  1OGC A;  1OGF A;  4A34 A;  3P13 A;  2WCV A;  1OGD A;  3MVK A;  2WCU A;  3P12 A;  2OB5 A; 
#chains in the Genus database with same CATH topology
 1OGE A;  3E7N A;  1OGC A;  1OGF A;  4A34 A;  3P13 A;  2WCV A;  1OGD A;  3MVK A;  2WCU A;  3P12 A;  2OB5 A; 
#chains in the Genus database with same CATH homology
 1OGE A;  3E7N A;  1OGC A;  1OGF A;  4A34 A;  3P13 A;  2WCV A;  1OGD A;  3MVK A;  2WCU A;  3P12 A;  2OB5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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