2WCWA

1.6a resolution structure of archaeoglobus fulgidus hjc, a holliday junction resolvase from an archaeal hyperthermophile
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
126
structure length
126
Chain Sequence
KGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAGNGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGAEAYVALKLPRAAWRFFPVQMLERTEKNFKIDESVYPLGLEIAEVAGKFFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HJC
publication title 1.6 A Resolution Structure of Archaeoglobus Fulgidus Hjc, a Holliday Junction Resolvase from an Archaeal Hyperthermophile
rcsb
source organism Archaeoglobus fulgidus
total genus 32
structure length 126
sequence length 126
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2009-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2wcwA00
2FCOA 3P1ZB 2INBA 1OB9A 2VLDA 2WIWA 1OB8A 1XMXA 1Y1OA 2ZYZB 4QBOA 1R11A 3P1ZA 1T0FA 2GJWA 4QBLA 1GEFA 2ZYZA 3AJVB 2WIZA 2OKFA 5FDKA 3IEYA 4QBNA 2WJ0A 1Y88A 2WCZA 3DNXA 2OSTA 1F1ZA 3AJVA 1A79A 1IPIA 1RLVA 1RZNA 1R0VA 4TKDA 2EO0A 2GW6A 3P1YA 2CV8A 2WCWA 3FOVA 1ZP7A 4TKKA 1HH1A
chains in the Genus database with same CATH superfamily
1YNMA 4LQEA 2FKHB 4E6ZA 2DBSA 2FKCA 2FCOA 3P1ZB 2INBA 1OB9A 2VLDA 2WIWA 1OB8A 2IXSA 2JJQA 1XMXA 2CZRA 1Y1OA 2ZYZB 4QBOA 1R11A 2FLCA 3IEYB 1T0FA 3P1ZA 2GJWA 2Z0RA 2VS1A 4QBLA 1GEFA 4DAVA 2ZYZA 3AJVB 2WIZA 2OKFA 1UWVA 2W8MA 3IEYA 4G6UA 5FDKA 4QBNA 2WJ0A 2FL3A 3BT7A 1Y88A 2WCZA 3DNXA 2OSTA 1F1ZA 3AJVA 1A79A 4DAPA 1IPIA 4ZQUA 2BH2A 1RLVA 1RZNA 1R0VA 3IF0X 4G6VA 4EV1A 4TKDA 2EO0A 2GW6A 3P1YA 2CV8A 2WCWA 3FOVA 4DA2A 1ZP7A 4TKKA 1HH1A
chains in the Genus database with same CATH topology
1YNMA 4LQEA 2FKHB 4E6ZA 2DBSA 2FKCA 2FCOA 3P1ZB 2INBA 1OB9A 2VLDA 2WIWA 1OB8A 2IXSA 2JJQA 1XMXA 2CZRA 1Y1OA 2ZYZB 4QBOA 1R11A 2FLCA 3IEYB 1T0FA 3P1ZA 2GJWA 2Z0RA 2VS1A 4QBLA 1GEFA 4DAVA 2ZYZA 3AJVB 2WIZA 2OKFA 1UWVA 2W8MA 3IEYA 4G6UA 5FDKA 4QBNA 2WJ0A 2FL3A 3BT7A 1Y88A 2WCZA 3DNXA 2OSTA 1F1ZA 3AJVA 1A79A 4DAPA 1IPIA 4ZQUA 2BH2A 1RLVA 1RZNA 1R0VA 3IF0X 4G6VA 4EV1A 4TKDA 2EO0A 2GW6A 3P1YA 2CV8A 2WCWA 3FOVA 4DA2A 1ZP7A 4TKKA 1HH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FCO A;  3P1Z B;  2INB A;  1OB9 A;  2VLD A;  2WIW A;  1OB8 A;  1XMX A;  1Y1O A;  2ZYZ B;  4QBO A;  1R11 A;  3P1Z A;  1T0F A;  2GJW A;  4QBL A;  1GEF A;  2ZYZ A;  3AJV B;  2WIZ A;  2OKF A;  5FDK A;  3IEY A;  4QBN A;  2WJ0 A;  1Y88 A;  2WCZ A;  3DNX A;  2OST A;  1F1Z A;  3AJV A;  1A79 A;  1IPI A;  1RLV A;  1RZN A;  1R0V A;  4TKD A;  2EO0 A;  2GW6 A;  3P1Y A;  2CV8 A;  2WCW A;  3FOV A;  1ZP7 A;  4TKK A;  1HH1 A; 
#chains in the Genus database with same CATH topology
 1YNM A;  4LQE A;  2FKH B;  4E6Z A;  2DBS A;  2FKC A;  2FCO A;  3P1Z B;  2INB A;  1OB9 A;  2VLD A;  2WIW A;  1OB8 A;  2IXS A;  2JJQ A;  1XMX A;  2CZR A;  1Y1O A;  2ZYZ B;  4QBO A;  1R11 A;  2FLC A;  3IEY B;  1T0F A;  3P1Z A;  2GJW A;  2Z0R A;  2VS1 A;  4QBL A;  1GEF A;  4DAV A;  2ZYZ A;  3AJV B;  2WIZ A;  2OKF A;  1UWV A;  2W8M A;  3IEY A;  4G6U A;  5FDK A;  4QBN A;  2WJ0 A;  2FL3 A;  3BT7 A;  1Y88 A;  2WCZ A;  3DNX A;  2OST A;  1F1Z A;  3AJV A;  1A79 A;  4DAP A;  1IPI A;  4ZQU A;  2BH2 A;  1RLV A;  1RZN A;  1R0V A;  3IF0 X;  4G6V A;  4EV1 A;  4TKD A;  2EO0 A;  2GW6 A;  3P1Y A;  2CV8 A;  2WCW A;  3FOV A;  4DA2 A;  1ZP7 A;  4TKK A;  1HH1 A; 
#chains in the Genus database with same CATH homology
 1YNM A;  4LQE A;  2FKH B;  4E6Z A;  2DBS A;  2FKC A;  2FCO A;  3P1Z B;  2INB A;  1OB9 A;  2VLD A;  2WIW A;  1OB8 A;  2IXS A;  2JJQ A;  1XMX A;  2CZR A;  1Y1O A;  2ZYZ B;  4QBO A;  1R11 A;  2FLC A;  3IEY B;  1T0F A;  3P1Z A;  2GJW A;  2Z0R A;  2VS1 A;  4QBL A;  1GEF A;  4DAV A;  2ZYZ A;  3AJV B;  2WIZ A;  2OKF A;  1UWV A;  2W8M A;  3IEY A;  4G6U A;  5FDK A;  4QBN A;  2WJ0 A;  2FL3 A;  3BT7 A;  1Y88 A;  2WCZ A;  3DNX A;  2OST A;  1F1Z A;  3AJV A;  1A79 A;  4DAP A;  1IPI A;  4ZQU A;  2BH2 A;  1RLV A;  1RZN A;  1R0V A;  3IF0 X;  4G6V A;  4EV1 A;  4TKD A;  2EO0 A;  2GW6 A;  3P1Y A;  2CV8 A;  2WCW A;  3FOV A;  4DA2 A;  1ZP7 A;  4TKK A;  1HH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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