2WDEA

Termus thermophilus sulfate thiohydrolase soxb in complex with thiosulfate
Total Genus 187
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
187
sequence length
545
structure length
545
Chain Sequence
RSLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSHWEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHDLTPRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYKRDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAYGGRLQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVRPEPNVKVIGRNYRLPEVTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords SULFUR OXIDATION PROTEIN SOXB
publication title Mechanism for the Hydrolysis of a Sulfur-Sulfur Bond Based on the Crystal Structure of the Thiosulfohydrolase Soxb.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
total genus 187
structure length 545
sequence length 545
ec nomenclature ec 3.12.2.1:
pdb deposition date 2009-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2wdeA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 2wdeA03
4H1SA 1HO5A 3H63A 4WWLA 1SU1A 5DNYA 3H64A 4LU9A 2WDDA 4V0VA 2R17A 2NYMC 4LTYA 4TUGA 2BQ8X 3CK2A 1MF8A 3N5UA 3H67A 3V4YA 1TCOA 4ZX2A 1HP1A 2USHA 3EGHA 1OIEA 1W24A 2IAEC 3QFMA 2WDEA 1Z2WA 3QFOA 3E7AA 1XZWA 4B2OA 2AHDA 2BDXA 3TGHA 4J6OA 3THNA 3KBPA 4H2FA 4DHLA 2Q8UA 1WAO1 2QFPA 1U32A 5INBA 3GVEA 3QG5C 1FJMA 1UF3A 2Z06A 4H2GA 4KKZA 1OIDA 2NYLC 4UT2A 5JJTA 2HY1A 2JOGA 3H61A 1S70A 2KKNA 1S3MA 2P6BA 5F3WA 2Z72A 1IT6A 1QHWA 2DFJA 4NZVA 4LACC 4Q7FA 1UTEA 2GJUA 2IE4C 5EQVA 3QFNA 1V73A 4MOVA 1M63A 1II7A 4JA9A 2Z1AA 5GTUA 3JYFA 5JPFA 2QJCA 4YKEA 1S3LA 1XM7A 1KBPA 3RL4A 3H66A 4DT2A 1NNWA 3K7WC 3ZU0A 4UT3A 2IE3C 4MP0A 3ZTVA 4ORCA 3RL5A 4F0ZA 5B8IA 3HVQA 3LL8A 1S3NA 3QFKA 4O43A 1T71A 1S95A 2NXFA 4DSYA 4TUIA 1OI8A 4G9JA 4JA7A 2WDCA 4H1YP 3H60A 3DSDA 1G5BA 1WARA 4V0WA 1Z2XA 3P71C 4I5NC 3C5WC 3E7BA 3EGGA 3PSNA 2XMOA 4MOYA 4ORBA 4FBKA 3C9FA 4KBPA 4FCXA 3T1IA 3ICFA 2YVTA 4FBQA 4M0VA 5HPEA 2WDFA 3H69A 4OR9A 4UWQA 3IVEA 2CV9A 2BCDA 5C1VA 1USHA 5JPEA 1T70A 4V0XA 3RL3A 4FBWA 3AUZA 2HYPA 2A22A 3IVDA 4IL1A 5J28A 2O8AA 3FGAC 3H68A 3K7VC 1HPUA 2NPPC 2ZBMA 4O4KA 1QFCA 3PSOA 4ZVZA 3DW8C 4O5GA 3THOB 2HYOA 2O8GA 4XPNA 3H62B 3RQZA 1S8EA 4H2BA 4H2IA 5IOHA 2QFRA 4O24A 4IYPC 3DSCA 3IB8A 4I5LC 4ORAA 1JK7A 4HD0A 4UT3B 3AV0A 1AUIA 3IB7A
chains in the Genus database with same CATH superfamily
4H1SA 1HO5A 3H63A 4WWLA 1SU1A 5DNYA 3H64A 4LU9A 2WDDA 4V0VA 2R17A 2NYMC 4LTYA 4TUGA 2BQ8X 3CK2A 1MF8A 3FLOA 3N5UA 3H67A 3V4YA 1TCOA 4ZX2A 1HP1A 2USHA 3EGHA 1OIEA 1W24A 2IAEC 3QFMA 2WDEA 1Z2WA 3QFOA 3E7AA 1XZWA 4B2OA 2AHDA 2BDXA 3TGHA 4J6OA 3THNA 3KBPA 4H2FA 4DHLA 2Q8UA 1WAO1 2QFPA 1U32A 5INBA 3GVEA 3QG5C 1FJMA 1UF3A 2Z06A 4H2GA 4KKZA 1OIDA 2NYLC 4UT2A 5JJTA 2HY1A 2JOGA 3H61A 1S70A 2DXLA 2KKNA 1S3MA 2P6BA 5F3WA 2Z72A 1IT6A 1QHWA 2DFJA 4NZVA 4LACC 4Q7FA 1UTEA 2GJUA 2IE4C 5EQVA 3QFNA 1V73A 4MOVA 1M63A 1II7A 4JA9A 2Z1AA 5GTUA 3JYFA 5JPFA 2QJCA 4YKEA 1S3LA 1XM7A 1KBPA 3RL4A 3E0JA 3H66A 4DT2A 1NNWA 3K7WC 3ZU0A 4UT3A 2IE3C 4MP0A 3ZTVA 4ORCA 3RL5A 4F0ZA 5B8IA 3HVQA 3LL8A 1S3NA 3QFKA 3D03A 4O43A 2ZO9B 1T71A 1S95A 2NXFA 4DSYA 4TUIA 1OI8A 4G9JA 4JA7A 2WDCA 4H1YP 3H60A 3DSDA 1G5BA 1WARA 4V0WA 1Z2XA 3P71C 4I5NC 3C5WC 3E7BA 3EGGA 3PSNA 2XMOA 4MOYA 4ORBA 4FBKA 3C9FA 4KBPA 4FCXA 3T1IA 3ICFA 2YVTA 4FBQA 4M0VA 5HPEA 2WDFA 3H69A 4OR9A 4UWQA 3IVEA 2CV9A 2BCDA 5C1VA 1USHA 5JPEA 1T70A 4V0XA 3RL3A 4FBWA 3AUZA 2HYPA 2A22A 3IVDA 4IL1A 5J28A 2O8AA 3FGAC 2DXNA 3H68A 3K7VC 1HPUA 2NPPC 2ZBMA 2ZOAA 4O4KA 1QFCA 3PSOA 4ZVZA 3DW8C 4O5GA 3THOB 2HYOA 2O8GA 2YEQA 4XPNA 3H62B 3RQZA 1S8EA 4H2BA 4H2IA 5IOHA 2QFRA 4O24A 4IYPC 3DSCA 3IB8A 4I5LC 4ORAA 1JK7A 4HD0A 4UT3B 3AV0A 1AUIA 3IB7A
chains in the Genus database with same CATH topology
4H1SA 1HO5A 3H63A 4WWLA 1SU1A 5DNYA 3H64A 4LU9A 2WDDA 4V0VA 2R17A 2NYMC 4LTYA 4TUGA 2BQ8X 3CK2A 1MF8A 3FLOA 3N5UA 3H67A 3V4YA 1TCOA 4ZX2A 1HP1A 2USHA 3EGHA 1OIEA 1W24A 2IAEC 3QFMA 2WDEA 1Z2WA 3QFOA 3E7AA 1XZWA 4B2OA 2AHDA 2BDXA 3TGHA 4J6OA 3THNA 3KBPA 4H2FA 4DHLA 2Q8UA 1WAO1 2QFPA 1U32A 5INBA 3GVEA 3QG5C 1FJMA 1UF3A 2Z06A 4H2GA 4KKZA 1OIDA 2NYLC 4UT2A 5JJTA 2HY1A 2JOGA 3H61A 1S70A 2DXLA 2KKNA 1S3MA 2P6BA 5F3WA 2Z72A 1IT6A 1QHWA 2DFJA 4NZVA 4LACC 4Q7FA 1UTEA 2GJUA 2IE4C 5EQVA 3QFNA 1V73A 4MOVA 1M63A 1II7A 4JA9A 2Z1AA 5GTUA 3JYFA 5JPFA 2QJCA 4YKEA 1S3LA 1XM7A 1KBPA 3RL4A 3E0JA 3H66A 4DT2A 1NNWA 3K7WC 3ZU0A 4UT3A 2IE3C 4MP0A 3ZTVA 4ORCA 3RL5A 4F0ZA 5B8IA 3HVQA 3LL8A 1S3NA 3QFKA 3D03A 4O43A 2ZO9B 1T71A 1S95A 2NXFA 4DSYA 4TUIA 1OI8A 4G9JA 4JA7A 2WDCA 4H1YP 3H60A 3DSDA 1G5BA 1WARA 4V0WA 1Z2XA 3P71C 4I5NC 3C5WC 3E7BA 3EGGA 3PSNA 2XMOA 4MOYA 4ORBA 4FBKA 3C9FA 4KBPA 4FCXA 3T1IA 3ICFA 2YVTA 4FBQA 4M0VA 5HPEA 2WDFA 3H69A 4OR9A 4UWQA 3IVEA 2CV9A 2BCDA 5C1VA 1USHA 5JPEA 1T70A 4V0XA 3RL3A 4FBWA 3AUZA 2HYPA 2A22A 3IVDA 4IL1A 5J28A 2O8AA 3FGAC 2DXNA 3H68A 3K7VC 1HPUA 2NPPC 2ZBMA 2ZOAA 4O4KA 1QFCA 3PSOA 4ZVZA 3DW8C 4O5GA 3THOB 2HYOA 2O8GA 2YEQA 4XPNA 3H62B 3RQZA 1S8EA 4H2BA 4H2IA 5IOHA 2QFRA 4O24A 4IYPC 3DSCA 3IB8A 4I5LC 4ORAA 1JK7A 4HD0A 4UT3B 3AV0A 1AUIA 3IB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H1S A;  1HO5 A;  3H63 A;  4WWL A;  1SU1 A;  5DNY A;  3H64 A;  4LU9 A;  2WDD A;  4V0V A;  2R17 A;  2NYM C;  4LTY A;  4TUG A;  2BQ8 X;  3CK2 A;  1MF8 A;  3N5U A;  3H67 A;  3V4Y A;  1TCO A;  4ZX2 A;  1HP1 A;  2USH A;  3EGH A;  1OIE A;  1W24 A;  2IAE C;  3QFM A;  2WDE A;  1Z2W A;  3QFO A;  3E7A A;  1XZW A;  4B2O A;  2AHD A;  2BDX A;  3TGH A;  4J6O A;  3THN A;  3KBP A;  4H2F A;  4DHL A;  2Q8U A;  1WAO 1;  2QFP A;  1U32 A;  5INB A;  3GVE A;  3QG5 C;  1FJM A;  1UF3 A;  2Z06 A;  4H2G A;  4KKZ A;  1OID A;  2NYL C;  4UT2 A;  5JJT A;  2HY1 A;  2JOG A;  3H61 A;  1S70 A;  2KKN A;  1S3M A;  2P6B A;  5F3W A;  2Z72 A;  1IT6 A;  1QHW A;  2DFJ A;  4NZV A;  4LAC C;  4Q7F A;  1UTE A;  2GJU A;  2IE4 C;  5EQV A;  3QFN A;  1V73 A;  4MOV A;  1M63 A;  1II7 A;  4JA9 A;  2Z1A A;  5GTU A;  3JYF A;  5JPF A;  2QJC A;  4YKE A;  1S3L A;  1XM7 A;  1KBP A;  3RL4 A;  3H66 A;  4DT2 A;  1NNW A;  3K7W C;  3ZU0 A;  4UT3 A;  2IE3 C;  4MP0 A;  3ZTV A;  4ORC A;  3RL5 A;  4F0Z A;  5B8I A;  3HVQ A;  3LL8 A;  1S3N A;  3QFK A;  4O43 A;  1T71 A;  1S95 A;  2NXF A;  4DSY A;  4TUI A;  1OI8 A;  4G9J A;  4JA7 A;  2WDC A;  4H1Y P;  3H60 A;  3DSD A;  1G5B A;  1WAR A;  4V0W A;  1Z2X A;  3P71 C;  4I5N C;  3C5W C;  3E7B A;  3EGG A;  3PSN A;  2XMO A;  4MOY A;  4ORB A;  4FBK A;  3C9F A;  4KBP A;  4FCX A;  3T1I A;  3ICF A;  2YVT A;  4FBQ A;  4M0V A;  5HPE A;  2WDF A;  3H69 A;  4OR9 A;  4UWQ A;  3IVE A;  2CV9 A;  2BCD A;  5C1V A;  1USH A;  5JPE A;  1T70 A;  4V0X A;  3RL3 A;  4FBW A;  3AUZ A;  2HYP A;  2A22 A;  3IVD A;  4IL1 A;  5J28 A;  2O8A A;  3FGA C;  3H68 A;  3K7V C;  1HPU A;  2NPP C;  2ZBM A;  4O4K A;  1QFC A;  3PSO A;  4ZVZ A;  3DW8 C;  4O5G A;  3THO B;  2HYO A;  2O8G A;  4XPN A;  3H62 B;  3RQZ A;  1S8E A;  4H2B A;  4H2I A;  5IOH A;  2QFR A;  4O24 A;  4IYP C;  3DSC A;  3IB8 A;  4I5L C;  4ORA A;  1JK7 A;  4HD0 A;  4UT3 B;  3AV0 A;  1AUI A;  3IB7 A; 
#chains in the Genus database with same CATH topology
 4H1S A;  1HO5 A;  3H63 A;  4WWL A;  1SU1 A;  5DNY A;  3H64 A;  4LU9 A;  2WDD A;  4V0V A;  2R17 A;  2NYM C;  4LTY A;  4TUG A;  2BQ8 X;  3CK2 A;  1MF8 A;  3FLO A;  3N5U A;  3H67 A;  3V4Y A;  1TCO A;  4ZX2 A;  1HP1 A;  2USH A;  3EGH A;  1OIE A;  1W24 A;  2IAE C;  3QFM A;  2WDE A;  1Z2W A;  3QFO A;  3E7A A;  1XZW A;  4B2O A;  2AHD A;  2BDX A;  3TGH A;  4J6O A;  3THN A;  3KBP A;  4H2F A;  4DHL A;  2Q8U A;  1WAO 1;  2QFP A;  1U32 A;  5INB A;  3GVE A;  3QG5 C;  1FJM A;  1UF3 A;  2Z06 A;  4H2G A;  4KKZ A;  1OID A;  2NYL C;  4UT2 A;  5JJT A;  2HY1 A;  2JOG A;  3H61 A;  1S70 A;  2DXL A;  2KKN A;  1S3M A;  2P6B A;  5F3W A;  2Z72 A;  1IT6 A;  1QHW A;  2DFJ A;  4NZV A;  4LAC C;  4Q7F A;  1UTE A;  2GJU A;  2IE4 C;  5EQV A;  3QFN A;  1V73 A;  4MOV A;  1M63 A;  1II7 A;  4JA9 A;  2Z1A A;  5GTU A;  3JYF A;  5JPF A;  2QJC A;  4YKE A;  1S3L A;  1XM7 A;  1KBP A;  3RL4 A;  3E0J A;  3H66 A;  4DT2 A;  1NNW A;  3K7W C;  3ZU0 A;  4UT3 A;  2IE3 C;  4MP0 A;  3ZTV A;  4ORC A;  3RL5 A;  4F0Z A;  5B8I A;  3HVQ A;  3LL8 A;  1S3N A;  3QFK A;  3D03 A;  4O43 A;  2ZO9 B;  1T71 A;  1S95 A;  2NXF A;  4DSY A;  4TUI A;  1OI8 A;  4G9J A;  4JA7 A;  2WDC A;  4H1Y P;  3H60 A;  3DSD A;  1G5B A;  1WAR A;  4V0W A;  1Z2X A;  3P71 C;  4I5N C;  3C5W C;  3E7B A;  3EGG A;  3PSN A;  2XMO A;  4MOY A;  4ORB A;  4FBK A;  3C9F A;  4KBP A;  4FCX A;  3T1I A;  3ICF A;  2YVT A;  4FBQ A;  4M0V A;  5HPE A;  2WDF A;  3H69 A;  4OR9 A;  4UWQ A;  3IVE A;  2CV9 A;  2BCD A;  5C1V A;  1USH A;  5JPE A;  1T70 A;  4V0X A;  3RL3 A;  4FBW A;  3AUZ A;  2HYP A;  2A22 A;  3IVD A;  4IL1 A;  5J28 A;  2O8A A;  3FGA C;  2DXN A;  3H68 A;  3K7V C;  1HPU A;  2NPP C;  2ZBM A;  2ZOA A;  4O4K A;  1QFC A;  3PSO A;  4ZVZ A;  3DW8 C;  4O5G A;  3THO B;  2HYO A;  2O8G A;  2YEQ A;  4XPN A;  3H62 B;  3RQZ A;  1S8E A;  4H2B A;  4H2I A;  5IOH A;  2QFR A;  4O24 A;  4IYP C;  3DSC A;  3IB8 A;  4I5L C;  4ORA A;  1JK7 A;  4HD0 A;  4UT3 B;  3AV0 A;  1AUI A;  3IB7 A; 
#chains in the Genus database with same CATH homology
 4H1S A;  1HO5 A;  3H63 A;  4WWL A;  1SU1 A;  5DNY A;  3H64 A;  4LU9 A;  2WDD A;  4V0V A;  2R17 A;  2NYM C;  4LTY A;  4TUG A;  2BQ8 X;  3CK2 A;  1MF8 A;  3FLO A;  3N5U A;  3H67 A;  3V4Y A;  1TCO A;  4ZX2 A;  1HP1 A;  2USH A;  3EGH A;  1OIE A;  1W24 A;  2IAE C;  3QFM A;  2WDE A;  1Z2W A;  3QFO A;  3E7A A;  1XZW A;  4B2O A;  2AHD A;  2BDX A;  3TGH A;  4J6O A;  3THN A;  3KBP A;  4H2F A;  4DHL A;  2Q8U A;  1WAO 1;  2QFP A;  1U32 A;  5INB A;  3GVE A;  3QG5 C;  1FJM A;  1UF3 A;  2Z06 A;  4H2G A;  4KKZ A;  1OID A;  2NYL C;  4UT2 A;  5JJT A;  2HY1 A;  2JOG A;  3H61 A;  1S70 A;  2DXL A;  2KKN A;  1S3M A;  2P6B A;  5F3W A;  2Z72 A;  1IT6 A;  1QHW A;  2DFJ A;  4NZV A;  4LAC C;  4Q7F A;  1UTE A;  2GJU A;  2IE4 C;  5EQV A;  3QFN A;  1V73 A;  4MOV A;  1M63 A;  1II7 A;  4JA9 A;  2Z1A A;  5GTU A;  3JYF A;  5JPF A;  2QJC A;  4YKE A;  1S3L A;  1XM7 A;  1KBP A;  3RL4 A;  3E0J A;  3H66 A;  4DT2 A;  1NNW A;  3K7W C;  3ZU0 A;  4UT3 A;  2IE3 C;  4MP0 A;  3ZTV A;  4ORC A;  3RL5 A;  4F0Z A;  5B8I A;  3HVQ A;  3LL8 A;  1S3N A;  3QFK A;  3D03 A;  4O43 A;  2ZO9 B;  1T71 A;  1S95 A;  2NXF A;  4DSY A;  4TUI A;  1OI8 A;  4G9J A;  4JA7 A;  2WDC A;  4H1Y P;  3H60 A;  3DSD A;  1G5B A;  1WAR A;  4V0W A;  1Z2X A;  3P71 C;  4I5N C;  3C5W C;  3E7B A;  3EGG A;  3PSN A;  2XMO A;  4MOY A;  4ORB A;  4FBK A;  3C9F A;  4KBP A;  4FCX A;  3T1I A;  3ICF A;  2YVT A;  4FBQ A;  4M0V A;  5HPE A;  2WDF A;  3H69 A;  4OR9 A;  4UWQ A;  3IVE A;  2CV9 A;  2BCD A;  5C1V A;  1USH A;  5JPE A;  1T70 A;  4V0X A;  3RL3 A;  4FBW A;  3AUZ A;  2HYP A;  2A22 A;  3IVD A;  4IL1 A;  5J28 A;  2O8A A;  3FGA C;  2DXN A;  3H68 A;  3K7V C;  1HPU A;  2NPP C;  2ZBM A;  2ZOA A;  4O4K A;  1QFC A;  3PSO A;  4ZVZ A;  3DW8 C;  4O5G A;  3THO B;  2HYO A;  2O8G A;  2YEQ A;  4XPN A;  3H62 B;  3RQZ A;  1S8E A;  4H2B A;  4H2I A;  5IOH A;  2QFR A;  4O24 A;  4IYP C;  3DSC A;  3IB8 A;  4I5L C;  4ORA A;  1JK7 A;  4HD0 A;  4UT3 B;  3AV0 A;  1AUI A;  3IB7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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