2WDQD

E. coli succinate:quinone oxidoreductase (sqr) with carboxin bound
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
105
structure length
105
Chain Sequence
NGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
publication title Structure of Escherichia coli succinate:quinone oxidoreductase with an occupied and empty quinone-binding site.
pubmed doi rcsb
source organism Escherichia coli
total genus 47
structure length 105
sequence length 105
chains with identical sequence H, L
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2wdqD00
2WDVC 4KX6C 4KX6D 2WP9C 2WP9D 1E7PC 1ZP0C 1ZP0D 3AE2C 3AE4C 3AE2D 2H89C 2H89D 2WDQD 3CIRD 3AE5C 3AE5D 3AE3C 3AE3D 2WU2C 2FBWC 2FBWD 3P4QC 3P4QD 3VRAD 1YQ3C 1YQ3D 5C3JC 5C3JD 3VR9C 3VR9D 2WQYC 2WQYD 3AECC 3AECD 3VR8C 3SFEC 3VR8D 3SFED 1QLBC 2WDQC 3CIRC 4YSYC 4YSYD 3VRBC 3VRBD 1L0VC 3AEDC 1L0VD 3AE8C 3AEDD 3AE8D 3P4RC 3P4RD 1NEKC 1NEKD 2WS3C 2WS3D 1ZOYC 2ACZD 1ZOYD 3VRAC 2H88C 2H88D 3AEFC 3AEFD 2WU5C 2WU5D 3SFDC 1KF6C 3SFDD 1KF6D 3AE7C 3AE7D 3AE6C 3AE6D 3P4SC 3P4SD 3AEGC 3AEGD 4YT0C 4YT0D 1NEND 2B76D 3AEEC 3AEED 1KFYC 3AEBC 1KFYD 3AEBD 2WDRC 2WDRD 4YTPC 4YSZC 4YTPD 4YSZD 2WDVD 3AE1C 3AE1D 1YQ4C 2BS3C 3AE4D 1YQ4D 4YTNC 4YTND 2BS2C 3P4PC 3P4PD 1NENC 2B76C 4YXDC 4YXDD 3ABVC 5C2TC 3ABVD 3AEAC 5C2TD 3AEAD 2WU2D 3AE9C 3AE9D 4YTMC 4YSXC 4YTMD 4YSXD 2ACZC 2BS4C
chains in the Genus database with same CATH superfamily
2WDVC 4KX6C 4KX6D 1TFFA 2WP9C 2WP9D 1E7PC 1ZP0C 1ZP0D 3AE2C 3AE4C 3AE2D 2H89C 2H89D 2WDQD 3CIRD 3AE5C 3AE5D 3AE3C 3AE3D 2WU2C 2FBWC 2FBWD 3P4QC 3P4QD 3VRAD 1YQ3C 1YQ3D 5C3JC 5C3JD 3VR9C 3VR9D 2WQYC 2WQYD 3AECC 3AECD 3VR8C 3SFEC 3VR8D 3SFED 1QLBC 2WDQC 4FJVA 3CIRC 4YSYC 4YSYD 4DHZA 3VRBC 3VRBD 1L0VC 3AEDC 1L0VD 3AE8C 3AEDD 3AE8D 3P4RC 3P4RD 4DHIB 1NEKC 1NEKD 2WS3C 2WS3D 1ZOYC 2ACZD 1ZOYD 4I6LA 3VRAC 2H88C 2H88D 3AEFC 3AEFD 2WU5C 2WU5D 3SFDC 1KF6C 3SFDD 1KF6D 3AE7C 3AE7D 4DDIA 3AE6C 3AE6D 3P4SC 3P4SD 3AEGC 3AEGD 4YT0C 4YT0D 1NEND 2B76D 3AEEC 3AEED 1KFYC 3AEBC 1KFYD 3AEBD 2WDRC 2WDRD 4LDTA 4YTPC 4YSZC 4YTPD 4YSZD 2WDVD 4DHJA 3AE1C 3AE1D 1YQ4C 2BS3C 3AE4D 1YQ4D 3VONA 4YTNC 4YTND 2BS2C 3P4PC 3P4PD 1NENC 4DDGA 2B76C 4YXDC 4YXDD 3ABVC 5C2TC 3ABVD 3AEAC 5C2TD 3AEAD 2WU2D 3AE9C 3AE9D 4YTMC 2ZFYA 4YSXC 4YTMD 4YSXD 2ACZC 2BS4C
chains in the Genus database with same CATH topology
2WDVC 4KX6C 4KX6D 2WP9C 2WP9D 1E7PC 1ZP0C 1ZP0D 3AE2C 3AE4C 3AE2D 2H89C 2H89D 2WDQD 3CIRD 3AE5C 3AE5D 3AE3C 3AE3D 2WU2C 2FBWC 2FBWD 3P4QC 3P4QD 3VRAD 1YQ3C 1YQ3D 5C3JC 5C3JD 3VR9C 3VR9D 2WQYC 2WQYD 3AECC 3AECD 3VR8C 3SFEC 3VR8D 3SFED 1QLBC 2WDQC 3CIRC 4YSYC 4YSYD 3VRBC 3VRBD 1L0VC 3AEDC 1L0VD 3AE8C 3AEDD 3AE8D 3P4RC 3P4RD 1NEKC 1NEKD 2WS3C 2WS3D 1ZOYC 2ACZD 1ZOYD 3VRAC 2H88C 2H88D 3AEFC 3AEFD 2WU5C 2WU5D 3SFDC 1KF6C 3SFDD 1KF6D 3AE7C 3AE7D 3AE6C 3AE6D 3P4SC 3P4SD 3AEGC 3AEGD 4YT0C 4YT0D 1NEND 2B76D 3AEEC 3AEED 1KFYC 3AEBC 1KFYD 3AEBD 2WDRC 2WDRD 4YTPC 4YSZC 4YTPD 4YSZD 2WDVD 3AE1C 3AE1D 1YQ4C 2BS3C 3AE4D 1YQ4D 4YTNC 4YTND 2BS2C 3P4PC 3P4PD 1NENC 2B76C 4YXDC 4YXDD 3ABVC 5C2TC 3ABVD 3AEAC 5C2TD 3AEAD 2WU2D 3AE9C 3AE9D 4YTMC 4YSXC 4YTMD 4YSXD 2ACZC 2BS4C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WDV C;  4KX6 C;  4KX6 D;  2WP9 C;  2WP9 D;  1E7P C;  1ZP0 C;  1ZP0 D;  3AE2 C;  3AE4 C;  3AE2 D;  2H89 C;  2H89 D;  2WDQ D;  3CIR D;  3AE5 C;  3AE5 D;  3AE3 C;  3AE3 D;  2WU2 C;  2FBW C;  2FBW D;  3P4Q C;  3P4Q D;  3VRA D;  1YQ3 C;  1YQ3 D;  5C3J C;  5C3J D;  3VR9 C;  3VR9 D;  2WQY C;  2WQY D;  3AEC C;  3AEC D;  3VR8 C;  3SFE C;  3VR8 D;  3SFE D;  1QLB C;  2WDQ C;  3CIR C;  4YSY C;  4YSY D;  3VRB C;  3VRB D;  1L0V C;  3AED C;  1L0V D;  3AE8 C;  3AED D;  3AE8 D;  3P4R C;  3P4R D;  1NEK C;  1NEK D;  2WS3 C;  2WS3 D;  1ZOY C;  2ACZ D;  1ZOY D;  3VRA C;  2H88 C;  2H88 D;  3AEF C;  3AEF D;  2WU5 C;  2WU5 D;  3SFD C;  1KF6 C;  3SFD D;  1KF6 D;  3AE7 C;  3AE7 D;  3AE6 C;  3AE6 D;  3P4S C;  3P4S D;  3AEG C;  3AEG D;  4YT0 C;  4YT0 D;  1NEN D;  2B76 D;  3AEE C;  3AEE D;  1KFY C;  3AEB C;  1KFY D;  3AEB D;  2WDR C;  2WDR D;  4YTP C;  4YSZ C;  4YTP D;  4YSZ D;  2WDV D;  3AE1 C;  3AE1 D;  1YQ4 C;  2BS3 C;  3AE4 D;  1YQ4 D;  4YTN C;  4YTN D;  2BS2 C;  3P4P C;  3P4P D;  1NEN C;  2B76 C;  4YXD C;  4YXD D;  3ABV C;  5C2T C;  3ABV D;  3AEA C;  5C2T D;  3AEA D;  2WU2 D;  3AE9 C;  3AE9 D;  4YTM C;  4YSX C;  4YTM D;  4YSX D;  2ACZ C;  2BS4 C; 
#chains in the Genus database with same CATH topology
 2WDV C;  4KX6 C;  4KX6 D;  1TFF A;  2WP9 C;  2WP9 D;  1E7P C;  1ZP0 C;  1ZP0 D;  3AE2 C;  3AE4 C;  3AE2 D;  2H89 C;  2H89 D;  2WDQ D;  3CIR D;  3AE5 C;  3AE5 D;  3AE3 C;  3AE3 D;  2WU2 C;  2FBW C;  2FBW D;  3P4Q C;  3P4Q D;  3VRA D;  1YQ3 C;  1YQ3 D;  5C3J C;  5C3J D;  3VR9 C;  3VR9 D;  2WQY C;  2WQY D;  3AEC C;  3AEC D;  3VR8 C;  3SFE C;  3VR8 D;  3SFE D;  1QLB C;  2WDQ C;  4FJV A;  3CIR C;  4YSY C;  4YSY D;  4DHZ A;  3VRB C;  3VRB D;  1L0V C;  3AED C;  1L0V D;  3AE8 C;  3AED D;  3AE8 D;  3P4R C;  3P4R D;  4DHI B;  1NEK C;  1NEK D;  2WS3 C;  2WS3 D;  1ZOY C;  2ACZ D;  1ZOY D;  4I6L A;  3VRA C;  2H88 C;  2H88 D;  3AEF C;  3AEF D;  2WU5 C;  2WU5 D;  3SFD C;  1KF6 C;  3SFD D;  1KF6 D;  3AE7 C;  3AE7 D;  4DDI A;  3AE6 C;  3AE6 D;  3P4S C;  3P4S D;  3AEG C;  3AEG D;  4YT0 C;  4YT0 D;  1NEN D;  2B76 D;  3AEE C;  3AEE D;  1KFY C;  3AEB C;  1KFY D;  3AEB D;  2WDR C;  2WDR D;  4LDT A;  4YTP C;  4YSZ C;  4YTP D;  4YSZ D;  2WDV D;  4DHJ A;  3AE1 C;  3AE1 D;  1YQ4 C;  2BS3 C;  3AE4 D;  1YQ4 D;  3VON A;  4YTN C;  4YTN D;  2BS2 C;  3P4P C;  3P4P D;  1NEN C;  4DDG A;  2B76 C;  4YXD C;  4YXD D;  3ABV C;  5C2T C;  3ABV D;  3AEA C;  5C2T D;  3AEA D;  2WU2 D;  3AE9 C;  3AE9 D;  4YTM C;  2ZFY A;  4YSX C;  4YTM D;  4YSX D;  2ACZ C;  2BS4 C; 
#chains in the Genus database with same CATH homology
 2WDV C;  4KX6 C;  4KX6 D;  2WP9 C;  2WP9 D;  1E7P C;  1ZP0 C;  1ZP0 D;  3AE2 C;  3AE4 C;  3AE2 D;  2H89 C;  2H89 D;  2WDQ D;  3CIR D;  3AE5 C;  3AE5 D;  3AE3 C;  3AE3 D;  2WU2 C;  2FBW C;  2FBW D;  3P4Q C;  3P4Q D;  3VRA D;  1YQ3 C;  1YQ3 D;  5C3J C;  5C3J D;  3VR9 C;  3VR9 D;  2WQY C;  2WQY D;  3AEC C;  3AEC D;  3VR8 C;  3SFE C;  3VR8 D;  3SFE D;  1QLB C;  2WDQ C;  3CIR C;  4YSY C;  4YSY D;  3VRB C;  3VRB D;  1L0V C;  3AED C;  1L0V D;  3AE8 C;  3AED D;  3AE8 D;  3P4R C;  3P4R D;  1NEK C;  1NEK D;  2WS3 C;  2WS3 D;  1ZOY C;  2ACZ D;  1ZOY D;  3VRA C;  2H88 C;  2H88 D;  3AEF C;  3AEF D;  2WU5 C;  2WU5 D;  3SFD C;  1KF6 C;  3SFD D;  1KF6 D;  3AE7 C;  3AE7 D;  3AE6 C;  3AE6 D;  3P4S C;  3P4S D;  3AEG C;  3AEG D;  4YT0 C;  4YT0 D;  1NEN D;  2B76 D;  3AEE C;  3AEE D;  1KFY C;  3AEB C;  1KFY D;  3AEB D;  2WDR C;  2WDR D;  4YTP C;  4YSZ C;  4YTP D;  4YSZ D;  2WDV D;  3AE1 C;  3AE1 D;  1YQ4 C;  2BS3 C;  3AE4 D;  1YQ4 D;  4YTN C;  4YTN D;  2BS2 C;  3P4P C;  3P4P D;  1NEN C;  2B76 C;  4YXD C;  4YXD D;  3ABV C;  5C2T C;  3ABV D;  3AEA C;  5C2T D;  3AEA D;  2WU2 D;  3AE9 C;  3AE9 D;  4YTM C;  4YSX C;  4YTM D;  4YSX D;  2ACZ C;  2BS4 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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