2WDRD

E. coli succinate:quinone oxidoreductase (sqr) with pentachlorophenol bound
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
105
structure length
105
Chain Sequence
NGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
publication title Structure of Escherichia Coli Succinate:Quinone Oxidoreductase with an Occupied and Empty Quinone- Binding Site.
pubmed doi rcsb
source organism Escherichia coli
total genus 44
structure length 105
sequence length 105
chains with identical sequence H, L
ec nomenclature
pdb deposition date 2009-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2wdrD00
4YSYD 3ABVD 1ZP0C 3AEFD 2WQYC 2B76D 1KF6C 1ZP0D 1L0VC 1YQ3C 2H89C 3AEGC 2H88C 3AE4C 1KF6D 1YQ3D 4YTPD 3AEGD 2H88D 2WS3C 3AE5C 4KX6C 4YXDC 2WS3D 3AE5D 3P4QC 4KX6D 3AEEC 4YSXC 3AE6D 2WP9C 4YXDD 3P4QD 3AEED 4YSZD 4YSXD 2WP9D 2B76C 3AE8C 3VRAC 2WDVC 3AE2C 3P4RC 3AE8D 3AEBD 3VRAD 4YTPC 2WDVD 3AE2D 3P4RD 2BS2C 3CIRC 2WDRD 3AE6C 3SFED 3AECC 3CIRD 2BS4C 4YSZC 3P4SC 4YTMD 3AECD 3P4SD 1NENC 3AEBC 2WDQD 1NEND 4YT0C 1YQ4C 3AEDC 1QLBC 1E7PC 4YT0D 2WDRC 3P4PD 1YQ4D 2WU5C 3VRBD 3AEDD 3SFEC 2WU2C 3AEAC 2WU5D 4YTMC 2WU2D 3AEAD 2ACZC 1ZOYC 3VR8C 2FBWC 3AE3D 2WDQC 2ACZD 1ZOYD 3AE9C 1NEKC 2FBWD 3SFDC 3VR8D 4YTNC 1KFYC 2BS3C 5C2TC 2WQYD 3AE9D 3SFDD 1NEKD 4YTND 1L0VD 1KFYD 3VR9C 5C2TD 5C3JC 3P4PC 2H89D 3VRBC 3AE4D 3VR9D 3AE7C 5C3JD 3AE1C 4YSYC 3ABVC 3AE7D 3AE1D 3AE3C 3AEFC
chains in the Genus database with same CATH superfamily
4YSYD 3ABVD 4LDTA 1ZP0C 3AEFD 2WQYC 2B76D 1KF6C 1ZP0D 1L0VC 1YQ3C 4DDIA 2H89C 3AEGC 2H88C 3AE4C 1KF6D 1YQ3D 4YTPD 3AEGD 2H88D 2ZFYA 2WS3C 3AE5C 4KX6C 3VONA 4YXDC 2WS3D 3AE5D 3P4QC 4KX6D 3AEEC 4DHJA 4YSXC 3AE6D 2WP9C 4YXDD 3P4QD 3AEED 4YSZD 4YSXD 2WP9D 2B76C 3AE8C 3VRAC 2WDVC 3AE2C 3P4RC 3AE8D 3AEBD 3VRAD 4YTPC 2WDVD 3AE2D 3P4RD 2BS2C 3CIRC 1TFFA 2WDRD 3AE6C 4FJVA 3SFED 3AECC 3CIRD 2BS4C 4YSZC 3P4SC 4YTMD 3AECD 3P4SD 1NENC 3AEBC 2WDQD 4DHIB 1NEND 4YT0C 1YQ4C 3AEDC 1QLBC 1E7PC 4YT0D 2WDRC 3P4PD 1YQ4D 2WU5C 4DHZA 3VRBD 3AEDD 3SFEC 2WU2C 3AEAC 2WU5D 4DDGA 4YTMC 2WU2D 3AEAD 2ACZC 1ZOYC 3VR8C 2FBWC 3AE3D 2WDQC 2ACZD 1ZOYD 3AE9C 1NEKC 2FBWD 3SFDC 3VR8D 4YTNC 1KFYC 2BS3C 5C2TC 2WQYD 3AE9D 3SFDD 1NEKD 4YTND 1L0VD 1KFYD 3VR9C 5C2TD 5C3JC 3P4PC 2H89D 3VRBC 3AE4D 3VR9D 3AE7C 5C3JD 3AE1C 4I6LA 4YSYC 3ABVC 3AE7D 3AE1D 3AE3C 3AEFC
chains in the Genus database with same CATH topology
4YSYD 3ABVD 1ZP0C 3AEFD 2WQYC 2B76D 1KF6C 1ZP0D 1L0VC 1YQ3C 2H89C 3AEGC 2H88C 3AE4C 1KF6D 1YQ3D 4YTPD 3AEGD 2H88D 2WS3C 3AE5C 4KX6C 4YXDC 2WS3D 3AE5D 3P4QC 4KX6D 3AEEC 4YSXC 3AE6D 2WP9C 4YXDD 3P4QD 3AEED 4YSZD 4YSXD 2WP9D 2B76C 3AE8C 3VRAC 2WDVC 3AE2C 3P4RC 3AE8D 3AEBD 3VRAD 4YTPC 2WDVD 3AE2D 3P4RD 2BS2C 3CIRC 2WDRD 3AE6C 3SFED 3AECC 3CIRD 2BS4C 4YSZC 3P4SC 4YTMD 3AECD 3P4SD 1NENC 3AEBC 2WDQD 1NEND 4YT0C 1YQ4C 3AEDC 1QLBC 1E7PC 4YT0D 2WDRC 3P4PD 1YQ4D 2WU5C 3VRBD 3AEDD 3SFEC 2WU2C 3AEAC 2WU5D 4YTMC 2WU2D 3AEAD 2ACZC 1ZOYC 3VR8C 2FBWC 3AE3D 2WDQC 2ACZD 1ZOYD 3AE9C 1NEKC 2FBWD 3SFDC 3VR8D 4YTNC 1KFYC 2BS3C 5C2TC 2WQYD 3AE9D 3SFDD 1NEKD 4YTND 1L0VD 1KFYD 3VR9C 5C2TD 5C3JC 3P4PC 2H89D 3VRBC 3AE4D 3VR9D 3AE7C 5C3JD 3AE1C 4YSYC 3ABVC 3AE7D 3AE1D 3AE3C 3AEFC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YSY D;  3ABV D;  1ZP0 C;  3AEF D;  2WQY C;  2B76 D;  1KF6 C;  1ZP0 D;  1L0V C;  1YQ3 C;  2H89 C;  3AEG C;  2H88 C;  3AE4 C;  1KF6 D;  1YQ3 D;  4YTP D;  3AEG D;  2H88 D;  2WS3 C;  3AE5 C;  4KX6 C;  4YXD C;  2WS3 D;  3AE5 D;  3P4Q C;  4KX6 D;  3AEE C;  4YSX C;  3AE6 D;  2WP9 C;  4YXD D;  3P4Q D;  3AEE D;  4YSZ D;  4YSX D;  2WP9 D;  2B76 C;  3AE8 C;  3VRA C;  2WDV C;  3AE2 C;  3P4R C;  3AE8 D;  3AEB D;  3VRA D;  4YTP C;  2WDV D;  3AE2 D;  3P4R D;  2BS2 C;  3CIR C;  2WDR D;  3AE6 C;  3SFE D;  3AEC C;  3CIR D;  2BS4 C;  4YSZ C;  3P4S C;  4YTM D;  3AEC D;  3P4S D;  1NEN C;  3AEB C;  2WDQ D;  1NEN D;  4YT0 C;  1YQ4 C;  3AED C;  1QLB C;  1E7P C;  4YT0 D;  2WDR C;  3P4P D;  1YQ4 D;  2WU5 C;  3VRB D;  3AED D;  3SFE C;  2WU2 C;  3AEA C;  2WU5 D;  4YTM C;  2WU2 D;  3AEA D;  2ACZ C;  1ZOY C;  3VR8 C;  2FBW C;  3AE3 D;  2WDQ C;  2ACZ D;  1ZOY D;  3AE9 C;  1NEK C;  2FBW D;  3SFD C;  3VR8 D;  4YTN C;  1KFY C;  2BS3 C;  5C2T C;  2WQY D;  3AE9 D;  3SFD D;  1NEK D;  4YTN D;  1L0V D;  1KFY D;  3VR9 C;  5C2T D;  5C3J C;  3P4P C;  2H89 D;  3VRB C;  3AE4 D;  3VR9 D;  3AE7 C;  5C3J D;  3AE1 C;  4YSY C;  3ABV C;  3AE7 D;  3AE1 D;  3AE3 C;  3AEF C; 
#chains in the Genus database with same CATH topology
 4YSY D;  3ABV D;  4LDT A;  1ZP0 C;  3AEF D;  2WQY C;  2B76 D;  1KF6 C;  1ZP0 D;  1L0V C;  1YQ3 C;  4DDI A;  2H89 C;  3AEG C;  2H88 C;  3AE4 C;  1KF6 D;  1YQ3 D;  4YTP D;  3AEG D;  2H88 D;  2ZFY A;  2WS3 C;  3AE5 C;  4KX6 C;  3VON A;  4YXD C;  2WS3 D;  3AE5 D;  3P4Q C;  4KX6 D;  3AEE C;  4DHJ A;  4YSX C;  3AE6 D;  2WP9 C;  4YXD D;  3P4Q D;  3AEE D;  4YSZ D;  4YSX D;  2WP9 D;  2B76 C;  3AE8 C;  3VRA C;  2WDV C;  3AE2 C;  3P4R C;  3AE8 D;  3AEB D;  3VRA D;  4YTP C;  2WDV D;  3AE2 D;  3P4R D;  2BS2 C;  3CIR C;  1TFF A;  2WDR D;  3AE6 C;  4FJV A;  3SFE D;  3AEC C;  3CIR D;  2BS4 C;  4YSZ C;  3P4S C;  4YTM D;  3AEC D;  3P4S D;  1NEN C;  3AEB C;  2WDQ D;  4DHI B;  1NEN D;  4YT0 C;  1YQ4 C;  3AED C;  1QLB C;  1E7P C;  4YT0 D;  2WDR C;  3P4P D;  1YQ4 D;  2WU5 C;  4DHZ A;  3VRB D;  3AED D;  3SFE C;  2WU2 C;  3AEA C;  2WU5 D;  4DDG A;  4YTM C;  2WU2 D;  3AEA D;  2ACZ C;  1ZOY C;  3VR8 C;  2FBW C;  3AE3 D;  2WDQ C;  2ACZ D;  1ZOY D;  3AE9 C;  1NEK C;  2FBW D;  3SFD C;  3VR8 D;  4YTN C;  1KFY C;  2BS3 C;  5C2T C;  2WQY D;  3AE9 D;  3SFD D;  1NEK D;  4YTN D;  1L0V D;  1KFY D;  3VR9 C;  5C2T D;  5C3J C;  3P4P C;  2H89 D;  3VRB C;  3AE4 D;  3VR9 D;  3AE7 C;  5C3J D;  3AE1 C;  4I6L A;  4YSY C;  3ABV C;  3AE7 D;  3AE1 D;  3AE3 C;  3AEF C; 
#chains in the Genus database with same CATH homology
 4YSY D;  3ABV D;  1ZP0 C;  3AEF D;  2WQY C;  2B76 D;  1KF6 C;  1ZP0 D;  1L0V C;  1YQ3 C;  2H89 C;  3AEG C;  2H88 C;  3AE4 C;  1KF6 D;  1YQ3 D;  4YTP D;  3AEG D;  2H88 D;  2WS3 C;  3AE5 C;  4KX6 C;  4YXD C;  2WS3 D;  3AE5 D;  3P4Q C;  4KX6 D;  3AEE C;  4YSX C;  3AE6 D;  2WP9 C;  4YXD D;  3P4Q D;  3AEE D;  4YSZ D;  4YSX D;  2WP9 D;  2B76 C;  3AE8 C;  3VRA C;  2WDV C;  3AE2 C;  3P4R C;  3AE8 D;  3AEB D;  3VRA D;  4YTP C;  2WDV D;  3AE2 D;  3P4R D;  2BS2 C;  3CIR C;  2WDR D;  3AE6 C;  3SFE D;  3AEC C;  3CIR D;  2BS4 C;  4YSZ C;  3P4S C;  4YTM D;  3AEC D;  3P4S D;  1NEN C;  3AEB C;  2WDQ D;  1NEN D;  4YT0 C;  1YQ4 C;  3AED C;  1QLB C;  1E7P C;  4YT0 D;  2WDR C;  3P4P D;  1YQ4 D;  2WU5 C;  3VRB D;  3AED D;  3SFE C;  2WU2 C;  3AEA C;  2WU5 D;  4YTM C;  2WU2 D;  3AEA D;  2ACZ C;  1ZOY C;  3VR8 C;  2FBW C;  3AE3 D;  2WDQ C;  2ACZ D;  1ZOY D;  3AE9 C;  1NEK C;  2FBW D;  3SFD C;  3VR8 D;  4YTN C;  1KFY C;  2BS3 C;  5C2T C;  2WQY D;  3AE9 D;  3SFD D;  1NEK D;  4YTN D;  1L0V D;  1KFY D;  3VR9 C;  5C2T D;  5C3J C;  3P4P C;  2H89 D;  3VRB C;  3AE4 D;  3VR9 D;  3AE7 C;  5C3J D;  3AE1 C;  4YSY C;  3ABV C;  3AE7 D;  3AE1 D;  3AE3 C;  3AEF C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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