2WFGA

Structure of the candida albicans cytosolic leucyl-trna synthetase editing domain bound to a benzoxaborole-amp adduct
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
250
structure length
250
Chain Sequence
GYVGIKIRLTDVAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords CYTOSOLIC LEUCYL-TRNA SYNTHETASE
publication title Crystal Structures of the Human and Fungal Cytosolic Leucyl-tRNA Synthetase Editing Domains: A Structural Basis for the Rational Design of Antifungal Benzoxaboroles.
pubmed doi rcsb
source organism Candida albicans
total genus 78
structure length 250
sequence length 250
ec nomenclature
pdb deposition date 2009-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 2wfgA00
2AJGA 3ZJVA 1WK8A 5AGIA 5AGHA 1FFYA 2BTEA 2BYTA 2V0GA 1ILEA 2AJIA 2AJHA 5AGRA 2V0CA 2WFDA 1H3NA 4K47A 1IVSA 1OBCA 4AS1A 4ARCA 3ZGZA 1WKBA 1UE0A 2WFEA 1QU3A 1WNYA 5AGJA 1JZQA 1QU2A 3ZJTA 4AQ7A 1JZSA 4CQNA 5AGSA 5AGTA 1WK9A 3ZJUA 3O0AA 3PZ6A 2WFGA 4ARIA 3PZ0A 1OBHA 1GAXA 1WKAA 1UDZA 3PZ5A 4K48A 1WNZA 1WZ2A
chains in the Genus database with same CATH superfamily
2AJGA 3ZJVA 1WK8A 5AGIA 5AGHA 1FFYA 2BTEA 2BYTA 2V0GA 1ILEA 2AJIA 2AJHA 5AGRA 2V0CA 2WFDA 1H3NA 4K47A 1IVSA 1OBCA 4AS1A 4ARCA 3ZGZA 1WKBA 1UE0A 2WFEA 1QU3A 1WNYA 5AGJA 1JZQA 1QU2A 3ZJTA 4AQ7A 1JZSA 4CQNA 5AGSA 5AGTA 1WK9A 3ZJUA 3O0AA 3PZ6A 2WFGA 4ARIA 3PZ0A 1OBHA 1GAXA 1WKAA 1UDZA 3PZ5A 4K48A 1WNZA 1WZ2A
chains in the Genus database with same CATH topology
2AJGA 3ZJVA 1WK8A 5AGIA 5AGHA 1FFYA 2BTEA 2BYTA 2V0GA 1ILEA 2AJIA 2AJHA 5AGRA 2V0CA 2WFDA 1H3NA 4K47A 1IVSA 1OBCA 4AS1A 4ARCA 3ZGZA 1WKBA 1UE0A 2WFEA 1QU3A 1WNYA 5AGJA 1JZQA 1QU2A 3ZJTA 4AQ7A 1JZSA 4CQNA 5AGSA 5AGTA 1WK9A 3ZJUA 3O0AA 3PZ6A 2WFGA 4ARIA 3PZ0A 1OBHA 1GAXA 1WKAA 1UDZA 3PZ5A 4K48A 1WNZA 1WZ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AJG A;  3ZJV A;  1WK8 A;  5AGI A;  5AGH A;  1FFY A;  2BTE A;  2BYT A;  2V0G A;  1ILE A;  2AJI A;  2AJH A;  5AGR A;  2V0C A;  2WFD A;  1H3N A;  4K47 A;  1IVS A;  1OBC A;  4AS1 A;  4ARC A;  3ZGZ A;  1WKB A;  1UE0 A;  2WFE A;  1QU3 A;  1WNY A;  5AGJ A;  1JZQ A;  1QU2 A;  3ZJT A;  4AQ7 A;  1JZS A;  4CQN A;  5AGS A;  5AGT A;  1WK9 A;  3ZJU A;  3O0A A;  3PZ6 A;  2WFG A;  4ARI A;  3PZ0 A;  1OBH A;  1GAX A;  1WKA A;  1UDZ A;  3PZ5 A;  4K48 A;  1WNZ A;  1WZ2 A; 
#chains in the Genus database with same CATH topology
 2AJG A;  3ZJV A;  1WK8 A;  5AGI A;  5AGH A;  1FFY A;  2BTE A;  2BYT A;  2V0G A;  1ILE A;  2AJI A;  2AJH A;  5AGR A;  2V0C A;  2WFD A;  1H3N A;  4K47 A;  1IVS A;  1OBC A;  4AS1 A;  4ARC A;  3ZGZ A;  1WKB A;  1UE0 A;  2WFE A;  1QU3 A;  1WNY A;  5AGJ A;  1JZQ A;  1QU2 A;  3ZJT A;  4AQ7 A;  1JZS A;  4CQN A;  5AGS A;  5AGT A;  1WK9 A;  3ZJU A;  3O0A A;  3PZ6 A;  2WFG A;  4ARI A;  3PZ0 A;  1OBH A;  1GAX A;  1WKA A;  1UDZ A;  3PZ5 A;  4K48 A;  1WNZ A;  1WZ2 A; 
#chains in the Genus database with same CATH homology
 2AJG A;  3ZJV A;  1WK8 A;  5AGI A;  5AGH A;  1FFY A;  2BTE A;  2BYT A;  2V0G A;  1ILE A;  2AJI A;  2AJH A;  5AGR A;  2V0C A;  2WFD A;  1H3N A;  4K47 A;  1IVS A;  1OBC A;  4AS1 A;  4ARC A;  3ZGZ A;  1WKB A;  1UE0 A;  2WFE A;  1QU3 A;  1WNY A;  5AGJ A;  1JZQ A;  1QU2 A;  3ZJT A;  4AQ7 A;  1JZS A;  4CQN A;  5AGS A;  5AGT A;  1WK9 A;  3ZJU A;  3O0A A;  3PZ6 A;  2WFG A;  4ARI A;  3PZ0 A;  1OBH A;  1GAX A;  1WKA A;  1UDZ A;  3PZ5 A;  4K48 A;  1WNZ A;  1WZ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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