2WIIC

Complement c3b in complex with factor h domains 1-4
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
245
structure length
245
Chain Sequence
CNELPPRRNTEILTGSWSDQTYPEGTQAIYKCRPGYRSLGNIIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWRPLPSCEEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords COMPLEMENT C3 BETA CHAIN
publication title Structure of complement fragment C3b-factor H and implications for host protection by complement regulators.
pubmed doi rcsb
source organism Homo sapiens
total genus 34
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2009-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2wiiC04
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2wiiC02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2wiiC01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2wiiC03
3O8EB 4CSYA 2JGWA 5JPMG 2MCYA 2CKUA 2BZMA 2XWJI 4J38B 3OP8A 2CG6A 4LOSA 4ONTD 1PPQA 2RKZA 2EHFA 3L89M 3ERBA 1G4FA 2B5ID 2MCZA 1LY2A 2CG7A 2W80A 1OK9A 3ZRZA 1ELVA 1MD8A 4DJZA 2EC3A 2A55A 5HYPA 3NFPI 4AYDA 1OK2A 3TVJA 1H2QP 4AYIA 1GKGA 1VVDA 2KRIA 5FO8C 1E8BA 1G4GA 1GKNA 3M7PA 3GOVA 1OJWA 1E88A 2RKYA 3MQLA 4FXGG 4LOTA 2W81A 5HZPB 3KZJA 4MUCA 3GXEA 4AYMA 3RJ3D 2XRDA 1TPMA 1OJYA 1GHQB 2KMSA 2V8EA 1FBRA 4PZ5A 2LOJA 2RL0A 1CKLA 1UOTP 5HYUB 1SRZA 2JGXA 1E5GA 1TPNA 1QGBA 2YBYA 3KXVA 3IU3I 3EJHA 1VVCA 4JHSA 1H2PP 3OXUD 4A5WB 5HYTB 2IZ3A 2UWNA 2XQWC 1NWVA 1O9AA 5I0QB 4YNXA 4WJG2 2RLPA 4B2RA 2ERJA 1U5MA 3INBC 1OK3A 3R62A 2QY0A 4K12A 4AYEA 1ZJKA 1H04P 1HFHA 2WIIC 3ZD2A 1SS2A 1C1ZA 2G7IA 1QUBA 4ZH1D 3T5OA 2RLQA 1OK1A 3CALA 1QO6A 2O39C 2XWBF 4B2SA 3IX0A 1HCCA 4C16A 2JRAA 1TPGA 4IGDA 1Z92B 4KKDA 2XRBA 4F4OC 1OJVA 1MD7A 3ZD1A 1Q3XA 1HFIA 2IZ4A 1H03P 1GPZA 2YRAA 3OEDC 3SW0X
chains in the Genus database with same CATH superfamily
2Y8RA 4PO7A 3O8EB 4CSYA 2JGWA 5JPMG 2MCYA 2CKUA 2BZMA 2XWJI 4J38B 3OP8A 2CG6A 4LOSA 4ONTD 2ZYCA 3WSXA 1PPQA 2RKZA 2EHFA 3L89M 3ERBA 1G4FA 2B5ID 2MCZA 1LY2A 3NJAA 2CG7A 2W80A 1OK9A 3ZRZA 3ZLEA 3VWOA 1ELVA 1MD8A 2Y8TA 2EC3A 4DJZA 2A55A 5DN4A 5HYPA 3NFPI 4AYDA 1OK2A 3TVJA 1H2QP 4AYIA 3K3TA 1VVDA 1GKGA 2KRIA 5FO8C 1E8BA 1G4GA 1GKNA 3M7PA 3GOVA 3FGRA 1OJWA 1E88A 2RKYA 3MQLA 5DN5A 4FXGG 4LOTA 2W81A 5HZPB 3KZJA 4MUCA 3GXEA 4AYMA 3RJ3D 2XRDA 1TPMA 3F6KA 1OJYA 1GHQB 2KMSA 2V8EA 1FBRA 4BWCA 4PZ5A 2LOJA 2RL0A 1CKLA 1UOTP 5HYUB 1SRZA 2JGXA 4N7EA 1TPNA 1E5GA 1QGBA 2YBYA 3KXVA 3IU3I 3EJHA 1VVCA 2X2ZA 4JHSA 1H2PP 3OXUD 3ZLDA 4A5WB 5HYTB 2IZ3A 2UWNA 2XQWC 1NWVA 1O9AA 5I0QB 4YNXA 1RLHA 4WJG2 2RLPA 4B2RA 2ERJA 1U5MA 3FGTA 3INBC 1OK3A 3R62A 2I2LA 2QY0A 4K12A 4AYEA 1ZJKA 1H04P 1HFHA 2WIIC 3WSYA 3ZD2A 1SS2A 1C1ZA 2G7IA 1QUBA 4ZH1D 4YIZA 3T5OA 2RLQA 1OK1A 3CALA 1QO6A 2O39C 2XWBF 4B2SA 3IX0A 1HCCA 4APLA 2JRAA 1TPGA 4C16A 4IGDA 1Z92B 4KKDA 4MSLA 2XRBA 3CI0J 4F4OC 1OJVA 1MD7A 3ZD1A 1Q3XA 1HFIA 2IZ4A 1H03P 1GPZA 2YRAA 3OEDC 3SW0X 2Y8SA
chains in the Genus database with same CATH topology
3O8EB 4CSYA 2JGWA 5JPMG 2MCYA 2CKUA 2BZMA 2XWJI 4J38B 3OP8A 2CG6A 4LOSA 4ONTD 1PPQA 2RKZA 2EHFA 3L89M 3ERBA 1G4FA 2B5ID 2MCZA 1LY2A 2CG7A 2W80A 1OK9A 3ZRZA 1ELVA 1MD8A 4DJZA 2EC3A 2A55A 5HYPA 3NFPI 4AYDA 1OK2A 3TVJA 1H2QP 4AYIA 1GKGA 1VVDA 2KRIA 5FO8C 1E8BA 1G4GA 1GKNA 3M7PA 3GOVA 1OJWA 1E88A 2RKYA 3MQLA 4FXGG 4LOTA 2W81A 5HZPB 3KZJA 4MUCA 3GXEA 4AYMA 3RJ3D 2XRDA 1TPMA 1OJYA 1GHQB 2KMSA 2V8EA 1FBRA 4PZ5A 2LOJA 2RL0A 1CKLA 1UOTP 5HYUB 1SRZA 2JGXA 1E5GA 1TPNA 1QGBA 2YBYA 3KXVA 3IU3I 3EJHA 1VVCA 4JHSA 1H2PP 3OXUD 4A5WB 5HYTB 2IZ3A 2UWNA 2XQWC 1NWVA 1O9AA 5I0QB 4YNXA 4WJG2 2RLPA 4B2RA 2ERJA 1U5MA 3INBC 1OK3A 3R62A 2QY0A 4K12A 4AYEA 1ZJKA 1H04P 1HFHA 2WIIC 3ZD2A 1SS2A 1C1ZA 2G7IA 1QUBA 4ZH1D 3T5OA 2RLQA 1OK1A 3CALA 1QO6A 2O39C 2XWBF 4B2SA 3IX0A 1HCCA 4C16A 2JRAA 1TPGA 4IGDA 1Z92B 4KKDA 2XRBA 4F4OC 1OJVA 1MD7A 3ZD1A 1Q3XA 1HFIA 2IZ4A 1H03P 1GPZA 2YRAA 3OEDC 3SW0X
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O8E B;  4CSY A;  2JGW A;  5JPM G;  2MCY A;  2CKU A;  2BZM A;  2XWJ I;  4J38 B;  3OP8 A;  2CG6 A;  4LOS A;  4ONT D;  1PPQ A;  2RKZ A;  2EHF A;  3L89 M;  3ERB A;  1G4F A;  2B5I D;  2MCZ A;  1LY2 A;  2CG7 A;  2W80 A;  1OK9 A;  3ZRZ A;  1ELV A;  1MD8 A;  4DJZ A;  2EC3 A;  2A55 A;  5HYP A;  3NFP I;  4AYD A;  1OK2 A;  3TVJ A;  1H2Q P;  4AYI A;  1GKG A;  1VVD A;  2KRI A;  5FO8 C;  1E8B A;  1G4G A;  1GKN A;  3M7P A;  3GOV A;  1OJW A;  1E88 A;  2RKY A;  3MQL A;  4FXG G;  4LOT A;  2W81 A;  5HZP B;  3KZJ A;  4MUC A;  3GXE A;  4AYM A;  3RJ3 D;  2XRD A;  1TPM A;  1OJY A;  1GHQ B;  2KMS A;  2V8E A;  1FBR A;  4PZ5 A;  2LOJ A;  2RL0 A;  1CKL A;  1UOT P;  5HYU B;  1SRZ A;  2JGX A;  1E5G A;  1TPN A;  1QGB A;  2YBY A;  3KXV A;  3IU3 I;  3EJH A;  1VVC A;  4JHS A;  1H2P P;  3OXU D;  4A5W B;  5HYT B;  2IZ3 A;  2UWN A;  2XQW C;  1NWV A;  1O9A A;  5I0Q B;  4YNX A;  4WJG 2;  2RLP A;  4B2R A;  2ERJ A;  1U5M A;  3INB C;  1OK3 A;  3R62 A;  2QY0 A;  4K12 A;  4AYE A;  1ZJK A;  1H04 P;  1HFH A;  2WII C;  3ZD2 A;  1SS2 A;  1C1Z A;  2G7I A;  1QUB A;  4ZH1 D;  3T5O A;  2RLQ A;  1OK1 A;  3CAL A;  1QO6 A;  2O39 C;  2XWB F;  4B2S A;  3IX0 A;  1HCC A;  4C16 A;  2JRA A;  1TPG A;  4IGD A;  1Z92 B;  4KKD A;  2XRB A;  4F4O C;  1OJV A;  1MD7 A;  3ZD1 A;  1Q3X A;  1HFI A;  2IZ4 A;  1H03 P;  1GPZ A;  2YRA A;  3OED C;  3SW0 X; 
#chains in the Genus database with same CATH topology
 2Y8R A;  4PO7 A;  3O8E B;  4CSY A;  2JGW A;  5JPM G;  2MCY A;  2CKU A;  2BZM A;  2XWJ I;  4J38 B;  3OP8 A;  2CG6 A;  4LOS A;  4ONT D;  2ZYC A;  3WSX A;  1PPQ A;  2RKZ A;  2EHF A;  3L89 M;  3ERB A;  1G4F A;  2B5I D;  2MCZ A;  1LY2 A;  3NJA A;  2CG7 A;  2W80 A;  1OK9 A;  3ZRZ A;  3ZLE A;  3VWO A;  1ELV A;  1MD8 A;  2Y8T A;  2EC3 A;  4DJZ A;  2A55 A;  5DN4 A;  5HYP A;  3NFP I;  4AYD A;  1OK2 A;  3TVJ A;  1H2Q P;  4AYI A;  3K3T A;  1VVD A;  1GKG A;  2KRI A;  5FO8 C;  1E8B A;  1G4G A;  1GKN A;  3M7P A;  3GOV A;  3FGR A;  1OJW A;  1E88 A;  2RKY A;  3MQL A;  5DN5 A;  4FXG G;  4LOT A;  2W81 A;  5HZP B;  3KZJ A;  4MUC A;  3GXE A;  4AYM A;  3RJ3 D;  2XRD A;  1TPM A;  3F6K A;  1OJY A;  1GHQ B;  2KMS A;  2V8E A;  1FBR A;  4BWC A;  4PZ5 A;  2LOJ A;  2RL0 A;  1CKL A;  1UOT P;  5HYU B;  1SRZ A;  2JGX A;  4N7E A;  1TPN A;  1E5G A;  1QGB A;  2YBY A;  3KXV A;  3IU3 I;  3EJH A;  1VVC A;  2X2Z A;  4JHS A;  1H2P P;  3OXU D;  3ZLD A;  4A5W B;  5HYT B;  2IZ3 A;  2UWN A;  2XQW C;  1NWV A;  1O9A A;  5I0Q B;  4YNX A;  1RLH A;  4WJG 2;  2RLP A;  4B2R A;  2ERJ A;  1U5M A;  3FGT A;  3INB C;  1OK3 A;  3R62 A;  2I2L A;  2QY0 A;  4K12 A;  4AYE A;  1ZJK A;  1H04 P;  1HFH A;  2WII C;  3WSY A;  3ZD2 A;  1SS2 A;  1C1Z A;  2G7I A;  1QUB A;  4ZH1 D;  4YIZ A;  3T5O A;  2RLQ A;  1OK1 A;  3CAL A;  1QO6 A;  2O39 C;  2XWB F;  4B2S A;  3IX0 A;  1HCC A;  4APL A;  2JRA A;  1TPG A;  4C16 A;  4IGD A;  1Z92 B;  4KKD A;  4MSL A;  2XRB A;  3CI0 J;  4F4O C;  1OJV A;  1MD7 A;  3ZD1 A;  1Q3X A;  1HFI A;  2IZ4 A;  1H03 P;  1GPZ A;  2YRA A;  3OED C;  3SW0 X;  2Y8S A; 
#chains in the Genus database with same CATH homology
 3O8E B;  4CSY A;  2JGW A;  5JPM G;  2MCY A;  2CKU A;  2BZM A;  2XWJ I;  4J38 B;  3OP8 A;  2CG6 A;  4LOS A;  4ONT D;  1PPQ A;  2RKZ A;  2EHF A;  3L89 M;  3ERB A;  1G4F A;  2B5I D;  2MCZ A;  1LY2 A;  2CG7 A;  2W80 A;  1OK9 A;  3ZRZ A;  1ELV A;  1MD8 A;  4DJZ A;  2EC3 A;  2A55 A;  5HYP A;  3NFP I;  4AYD A;  1OK2 A;  3TVJ A;  1H2Q P;  4AYI A;  1GKG A;  1VVD A;  2KRI A;  5FO8 C;  1E8B A;  1G4G A;  1GKN A;  3M7P A;  3GOV A;  1OJW A;  1E88 A;  2RKY A;  3MQL A;  4FXG G;  4LOT A;  2W81 A;  5HZP B;  3KZJ A;  4MUC A;  3GXE A;  4AYM A;  3RJ3 D;  2XRD A;  1TPM A;  1OJY A;  1GHQ B;  2KMS A;  2V8E A;  1FBR A;  4PZ5 A;  2LOJ A;  2RL0 A;  1CKL A;  1UOT P;  5HYU B;  1SRZ A;  2JGX A;  1E5G A;  1TPN A;  1QGB A;  2YBY A;  3KXV A;  3IU3 I;  3EJH A;  1VVC A;  4JHS A;  1H2P P;  3OXU D;  4A5W B;  5HYT B;  2IZ3 A;  2UWN A;  2XQW C;  1NWV A;  1O9A A;  5I0Q B;  4YNX A;  4WJG 2;  2RLP A;  4B2R A;  2ERJ A;  1U5M A;  3INB C;  1OK3 A;  3R62 A;  2QY0 A;  4K12 A;  4AYE A;  1ZJK A;  1H04 P;  1HFH A;  2WII C;  3ZD2 A;  1SS2 A;  1C1Z A;  2G7I A;  1QUB A;  4ZH1 D;  3T5O A;  2RLQ A;  1OK1 A;  3CAL A;  1QO6 A;  2O39 C;  2XWB F;  4B2S A;  3IX0 A;  1HCC A;  4C16 A;  2JRA A;  1TPG A;  4IGD A;  1Z92 B;  4KKD A;  2XRB A;  4F4O C;  1OJV A;  1MD7 A;  3ZD1 A;  1Q3X A;  1HFI A;  2IZ4 A;  1H03 P;  1GPZ A;  2YRA A;  3OED C;  3SW0 X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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