2WIZA

Crystal structures of holliday junction resolvases from archaeoglobus fulgidus bound to dna substrate
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
125
structure length
125
Chain Sequence
TRFERDLLVELWKAGFAAIRVAGSGVSPFPCPDIVAGNGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGAEAYVALKLPRKKWRFFPVQMLERTEKNFKIDESVYPLGLEIAEVAGKFFQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords ARCHAEAL HJC
publication title Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate
rcsb
source organism Archaeoglobus fulgidus dsm 4304
total genus 29
structure length 125
sequence length 125
chains with identical sequence B
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2009-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2wizA00
1R0VA 2OKFA 1OB9A 1XMXA 4QBNA 3FOVA 1T0FA 4TKDA 2EO0A 2INBA 1GEFA 1ZP7A 4TKKA 3P1ZB 3P1YA 3IEYA 1OB8A 1Y88A 4QBLA 3DNXA 2WIZA 1RZNA 1R11A 2FCOA 2GW6A 2WCZA 4QBOA 3P1ZA 2VLDA 2OSTA 3AJVB 2CV8A 1IPIA 1Y1OA 2ZYZB 1A79A 2WCWA 5FDKA 3AJVA 1HH1A 1F1ZA 1RLVA 2WJ0A 2GJWA 2WIWA 2ZYZA
chains in the Genus database with same CATH superfamily
1R0VA 2OKFA 4E6ZA 3IEYB 1OB9A 1XMXA 4QBNA 2CZRA 3FOVA 1T0FA 4TKDA 2EO0A 3BT7A 2VS1A 4G6UA 2INBA 1GEFA 4DAPA 1ZP7A 4LQEA 3P1ZB 3P1YA 3IEYA 4TKKA 2FKCA 1OB8A 1Y88A 3IF0X 4QBLA 1YNMA 3DNXA 2WIZA 1UWVA 1RZNA 1R11A 2FCOA 2GW6A 2JJQA 2W8MA 2WCZA 2Z0RA 4QBOA 3P1ZA 2VLDA 2OSTA 3AJVB 4DA2A 2FLCA 2CV8A 2FL3A 1IPIA 1Y1OA 2ZYZB 2IXSA 1A79A 2WCWA 5FDKA 2DBSA 4DAVA 2FKHB 3AJVA 4ZQUA 1HH1A 1F1ZA 1RLVA 2WJ0A 2BH2A 4G6VA 2GJWA 2WIWA 4EV1A 2ZYZA
chains in the Genus database with same CATH topology
1R0VA 2OKFA 4E6ZA 3IEYB 1OB9A 1XMXA 4QBNA 2CZRA 3FOVA 1T0FA 4TKDA 2EO0A 3BT7A 2VS1A 4G6UA 2INBA 1GEFA 4DAPA 1ZP7A 4LQEA 3P1ZB 3P1YA 3IEYA 4TKKA 2FKCA 1OB8A 1Y88A 3IF0X 4QBLA 1YNMA 3DNXA 2WIZA 1UWVA 1RZNA 1R11A 2FCOA 2GW6A 2JJQA 2W8MA 2WCZA 2Z0RA 4QBOA 3P1ZA 2VLDA 2OSTA 3AJVB 4DA2A 2FLCA 2CV8A 2FL3A 1IPIA 1Y1OA 2ZYZB 2IXSA 1A79A 2WCWA 5FDKA 2DBSA 4DAVA 2FKHB 3AJVA 4ZQUA 1HH1A 1F1ZA 1RLVA 2WJ0A 2BH2A 4G6VA 2GJWA 2WIWA 4EV1A 2ZYZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R0V A;  2OKF A;  1OB9 A;  1XMX A;  4QBN A;  3FOV A;  1T0F A;  4TKD A;  2EO0 A;  2INB A;  1GEF A;  1ZP7 A;  4TKK A;  3P1Z B;  3P1Y A;  3IEY A;  1OB8 A;  1Y88 A;  4QBL A;  3DNX A;  2WIZ A;  1RZN A;  1R11 A;  2FCO A;  2GW6 A;  2WCZ A;  4QBO A;  3P1Z A;  2VLD A;  2OST A;  3AJV B;  2CV8 A;  1IPI A;  1Y1O A;  2ZYZ B;  1A79 A;  2WCW A;  5FDK A;  3AJV A;  1HH1 A;  1F1Z A;  1RLV A;  2WJ0 A;  2GJW A;  2WIW A;  2ZYZ A; 
#chains in the Genus database with same CATH topology
 1R0V A;  2OKF A;  4E6Z A;  3IEY B;  1OB9 A;  1XMX A;  4QBN A;  2CZR A;  3FOV A;  1T0F A;  4TKD A;  2EO0 A;  3BT7 A;  2VS1 A;  4G6U A;  2INB A;  1GEF A;  4DAP A;  1ZP7 A;  4LQE A;  3P1Z B;  3P1Y A;  3IEY A;  4TKK A;  2FKC A;  1OB8 A;  1Y88 A;  3IF0 X;  4QBL A;  1YNM A;  3DNX A;  2WIZ A;  1UWV A;  1RZN A;  1R11 A;  2FCO A;  2GW6 A;  2JJQ A;  2W8M A;  2WCZ A;  2Z0R A;  4QBO A;  3P1Z A;  2VLD A;  2OST A;  3AJV B;  4DA2 A;  2FLC A;  2CV8 A;  2FL3 A;  1IPI A;  1Y1O A;  2ZYZ B;  2IXS A;  1A79 A;  2WCW A;  5FDK A;  2DBS A;  4DAV A;  2FKH B;  3AJV A;  4ZQU A;  1HH1 A;  1F1Z A;  1RLV A;  2WJ0 A;  2BH2 A;  4G6V A;  2GJW A;  2WIW A;  4EV1 A;  2ZYZ A; 
#chains in the Genus database with same CATH homology
 1R0V A;  2OKF A;  4E6Z A;  3IEY B;  1OB9 A;  1XMX A;  4QBN A;  2CZR A;  3FOV A;  1T0F A;  4TKD A;  2EO0 A;  3BT7 A;  2VS1 A;  4G6U A;  2INB A;  1GEF A;  4DAP A;  1ZP7 A;  4LQE A;  3P1Z B;  3P1Y A;  3IEY A;  4TKK A;  2FKC A;  1OB8 A;  1Y88 A;  3IF0 X;  4QBL A;  1YNM A;  3DNX A;  2WIZ A;  1UWV A;  1RZN A;  1R11 A;  2FCO A;  2GW6 A;  2JJQ A;  2W8M A;  2WCZ A;  2Z0R A;  4QBO A;  3P1Z A;  2VLD A;  2OST A;  3AJV B;  4DA2 A;  2FLC A;  2CV8 A;  2FL3 A;  1IPI A;  1Y1O A;  2ZYZ B;  2IXS A;  1A79 A;  2WCW A;  5FDK A;  2DBS A;  4DAV A;  2FKH B;  3AJV A;  4ZQU A;  1HH1 A;  1F1Z A;  1RLV A;  2WJ0 A;  2BH2 A;  4G6V A;  2GJW A;  2WIW A;  4EV1 A;  2ZYZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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