2WLVB

Structure of the n-terminal capsid domain of hiv-2
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
144
structure length
144
Chain Sequence
PVQHVGGTYTHIPLSPRTLNAWVKLVQQKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAAEWDVQHPIPGPLPAGQLREPRGSDIAGTTSTVEEQIQWMFRPQNPVPVGNIYRRWIQIGLQKCVRMY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords GAG POLYPROTEIN
publication title Active Site Remodelling Switches HIV Specificity of Antiretroviral Trimcyp
pubmed doi rcsb
source organism Human immunodeficiency virus type 2 (isolate d194)
total genus 53
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2009-06-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2wlvB00
2PWMA 4XROA 1M9CC 4XFYA 1EM9A 4INBA 4NX4C 2XGUA 2LF4A 1L6NA 4DGAC 5HGNA 4U0BA 1M9DC 3H47A 2XDEA 1EIAA 1AK4C 2KGFA 4DGEC 4U0DA 4U0CA 4HTWA 2X83A 4B4NA 1G03A 4E91A 3BP9A 4LQWC 1M9XC 2M8NA 4WYMA 1M9FC 1P7NA 1M9YC 1QRJA 2PWOA 2XGYA 2M8LA 2PXRC 2JPRA 1GWPA 2GONA 4E92A 4PH2A 4XFZA 2X2DD 4J93A 2GOLB 2V4XA 2X82A 1D1DA 5HGKA 2Y4ZA 1M9EC 4U0AA 1AFVA 1U7KA 4U0EA 4U0FA 5JPAA 4PH0A 2WLVA 4QNBA 5HGMA 4PH3A 5HGOA 3MGEA 3H4EA 3NTEA 2M8PA 4XRQA 1E6JP 5HGLA 3P05A 4XFXA 2EIAA 2XGVA 2WLVB
chains in the Genus database with same CATH superfamily
2PWMA 4XROA 1M9CC 4XFYA 1EM9A 4INBA 4NX4C 2XGUA 2LF4A 1L6NA 4DGAC 5HGNA 4U0BA 1M9DC 3H47A 2XDEA 1EIAA 1AK4C 2KGFA 4DGEC 4U0DA 4U0CA 4HTWA 2X83A 4B4NA 1G03A 4E91A 3BP9A 4LQWC 1M9XC 2M8NA 4WYMA 1M9FC 1P7NA 1M9YC 1QRJA 2PWOA 2XGYA 2M8LA 2PXRC 2JPRA 1GWPA 2GONA 4E92A 4PH2A 4XFZA 2X2DD 4J93A 2GOLB 2V4XA 2X82A 1D1DA 5HGKA 2Y4ZA 1M9EC 4U0AA 1AFVA 1U7KA 4U0EA 4U0FA 5JPAA 4PH0A 2WLVA 4QNBA 5HGMA 4PH3A 5HGOA 3MGEA 3H4EA 3NTEA 2M8PA 4XRQA 1E6JP 5HGLA 3P05A 4XFXA 2EIAA 2XGVA 2WLVB
chains in the Genus database with same CATH topology
2PWMA 4XROA 1M9CC 4XFYA 1EM9A 4INBA 4NX4C 2XGUA 2LF4A 1L6NA 4DGAC 5HGNA 4U0BA 1M9DC 3H47A 2XDEA 1EIAA 1AK4C 2KGFA 4DGEC 4U0DA 4U0CA 4HTWA 2X83A 4B4NA 1G03A 4E91A 3BP9A 4LQWC 1M9XC 2M8NA 4WYMA 1M9FC 1P7NA 1M9YC 1QRJA 2PWOA 2XGYA 2M8LA 2PXRC 2JPRA 1GWPA 2GONA 4E92A 4PH2A 4XFZA 2X2DD 4J93A 2GOLB 2V4XA 2X82A 1D1DA 5HGKA 2Y4ZA 1M9EC 4U0AA 1AFVA 1U7KA 4U0EA 4U0FA 5JPAA 4PH0A 2WLVA 4QNBA 5HGMA 4PH3A 5HGOA 3MGEA 3H4EA 3NTEA 2M8PA 4XRQA 1E6JP 5HGLA 3P05A 4XFXA 2EIAA 2XGVA 2WLVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PWM A;  4XRO A;  1M9C C;  4XFY A;  1EM9 A;  4INB A;  4NX4 C;  2XGU A;  2LF4 A;  1L6N A;  4DGA C;  5HGN A;  4U0B A;  1M9D C;  3H47 A;  2XDE A;  1EIA A;  1AK4 C;  2KGF A;  4DGE C;  4U0D A;  4U0C A;  4HTW A;  2X83 A;  4B4N A;  1G03 A;  4E91 A;  3BP9 A;  4LQW C;  1M9X C;  2M8N A;  4WYM A;  1M9F C;  1P7N A;  1M9Y C;  1QRJ A;  2PWO A;  2XGY A;  2M8L A;  2PXR C;  2JPR A;  1GWP A;  2GON A;  4E92 A;  4PH2 A;  4XFZ A;  2X2D D;  4J93 A;  2GOL B;  2V4X A;  2X82 A;  1D1D A;  5HGK A;  2Y4Z A;  1M9E C;  4U0A A;  1AFV A;  1U7K A;  4U0E A;  4U0F A;  5JPA A;  4PH0 A;  2WLV A;  4QNB A;  5HGM A;  4PH3 A;  5HGO A;  3MGE A;  3H4E A;  3NTE A;  2M8P A;  4XRQ A;  1E6J P;  5HGL A;  3P05 A;  4XFX A;  2EIA A;  2XGV A;  2WLV B; 
#chains in the Genus database with same CATH topology
 2PWM A;  4XRO A;  1M9C C;  4XFY A;  1EM9 A;  4INB A;  4NX4 C;  2XGU A;  2LF4 A;  1L6N A;  4DGA C;  5HGN A;  4U0B A;  1M9D C;  3H47 A;  2XDE A;  1EIA A;  1AK4 C;  2KGF A;  4DGE C;  4U0D A;  4U0C A;  4HTW A;  2X83 A;  4B4N A;  1G03 A;  4E91 A;  3BP9 A;  4LQW C;  1M9X C;  2M8N A;  4WYM A;  1M9F C;  1P7N A;  1M9Y C;  1QRJ A;  2PWO A;  2XGY A;  2M8L A;  2PXR C;  2JPR A;  1GWP A;  2GON A;  4E92 A;  4PH2 A;  4XFZ A;  2X2D D;  4J93 A;  2GOL B;  2V4X A;  2X82 A;  1D1D A;  5HGK A;  2Y4Z A;  1M9E C;  4U0A A;  1AFV A;  1U7K A;  4U0E A;  4U0F A;  5JPA A;  4PH0 A;  2WLV A;  4QNB A;  5HGM A;  4PH3 A;  5HGO A;  3MGE A;  3H4E A;  3NTE A;  2M8P A;  4XRQ A;  1E6J P;  5HGL A;  3P05 A;  4XFX A;  2EIA A;  2XGV A;  2WLV B; 
#chains in the Genus database with same CATH homology
 2PWM A;  4XRO A;  1M9C C;  4XFY A;  1EM9 A;  4INB A;  4NX4 C;  2XGU A;  2LF4 A;  1L6N A;  4DGA C;  5HGN A;  4U0B A;  1M9D C;  3H47 A;  2XDE A;  1EIA A;  1AK4 C;  2KGF A;  4DGE C;  4U0D A;  4U0C A;  4HTW A;  2X83 A;  4B4N A;  1G03 A;  4E91 A;  3BP9 A;  4LQW C;  1M9X C;  2M8N A;  4WYM A;  1M9F C;  1P7N A;  1M9Y C;  1QRJ A;  2PWO A;  2XGY A;  2M8L A;  2PXR C;  2JPR A;  1GWP A;  2GON A;  4E92 A;  4PH2 A;  4XFZ A;  2X2D D;  4J93 A;  2GOL B;  2V4X A;  2X82 A;  1D1D A;  5HGK A;  2Y4Z A;  1M9E C;  4U0A A;  1AFV A;  1U7K A;  4U0E A;  4U0F A;  5JPA A;  4PH0 A;  2WLV A;  4QNB A;  5HGM A;  4PH3 A;  5HGO A;  3MGE A;  3H4E A;  3NTE A;  2M8P A;  4XRQ A;  1E6J P;  5HGL A;  3P05 A;  4XFX A;  2EIA A;  2XGV A;  2WLV B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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