2WLVB

Structure of the n-terminal capsid domain of hiv-2
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
144
structure length
144
Chain Sequence
b'PVQHVGGTYTHIPLSPRTLNAWVKLVQQKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAAEWDVQHPIPGPLPAGQLREPRGSDIAGTTSTVEEQIQWMFRPQNPVPVGNIYRRWIQIGLQKCVRMY'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Active Site Remodelling Switches HIV Specificity of Antiretroviral Trimcyp
pubmed doi rcsb
molecule keywords GAG POLYPROTEIN
source organism Human immunodeficiency virus type 2 (isolate d194)
molecule tags Viral protein
total genus 53
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2009-06-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2wlvB00
4HTWA 4U0AA 3P05A 1EM9A 2PWMA 1AFVA 1U7KA 4INBA 1M9DC 1M9YC 1AK4C 1D1DA 2X82A 2LF4A 1G03A 4U0FA 1L6NA 5HGNA 1P7NA 4XFZA 4U0CA 2PWOA 4PH2A 2EIAA 1QRJA 4PH0A 2M8NA 1E6JP 3H4EA 4E92A 2JPRA 2Y4ZA 4U0BA 2KGFA 4XROA 4E91A 2GONA 4NX4C 2XGUA 1GWPA 1M9XC 2M8PA 5JPAA 4LQWC 4U0EA 1EIAA 2WLVB 4QNBA 2PXRC 2X2DD 4J93A 5HGMA 2WLVA 2X83A 4XRQA 3BP9A 3H47A 4B4NA 2GOLB 5HGOA 4WYMA 4PH3A 5HGLA 5HGKA 3MGEA 1M9CC 4DGEC 1M9EC 2XGVA 3NTEA 4XFYA 1M9FC 4U0DA 2XGYA 4XFXA 2XDEA 4DGAC 2V4XA 2M8LA
chains in the Genus database with same CATH superfamily
4HTWA 4U0AA 3P05A 1EM9A 2PWMA 1AFVA 1U7KA 4INBA 1M9DC 1M9YC 1AK4C 1D1DA 2X82A 2LF4A 1G03A 4U0FA 1L6NA 5HGNA 1P7NA 4XFZA 4U0CA 2PWOA 4PH2A 2EIAA 1QRJA 4PH0A 2M8NA 1E6JP 3H4EA 4E92A 2JPRA 2Y4ZA 4U0BA 2KGFA 4XROA 4E91A 2GONA 4NX4C 2XGUA 1GWPA 1M9XC 2M8PA 5JPAA 4LQWC 4U0EA 1EIAA 2WLVB 4QNBA 2PXRC 2X2DD 4J93A 5HGMA 2WLVA 2X83A 4XRQA 3BP9A 3H47A 4B4NA 2GOLB 5HGOA 4WYMA 4PH3A 5HGLA 5HGKA 3MGEA 1M9CC 4DGEC 1M9EC 2XGVA 3NTEA 4XFYA 1M9FC 4U0DA 2XGYA 4XFXA 2XDEA 4DGAC 2V4XA 2M8LA
chains in the Genus database with same CATH topology
4HTWA 4U0AA 3P05A 1EM9A 2PWMA 1AFVA 1U7KA 4INBA 1M9DC 1M9YC 1AK4C 1D1DA 2X82A 2LF4A 1G03A 4U0FA 1L6NA 5HGNA 1P7NA 4XFZA 4U0CA 2PWOA 4PH2A 2EIAA 1QRJA 4PH0A 2M8NA 1E6JP 3H4EA 4E92A 2JPRA 2Y4ZA 4U0BA 2KGFA 4XROA 4E91A 2GONA 4NX4C 2XGUA 1GWPA 1M9XC 2M8PA 5JPAA 4LQWC 4U0EA 1EIAA 2WLVB 4QNBA 2PXRC 2X2DD 4J93A 5HGMA 2WLVA 2X83A 4XRQA 3BP9A 3H47A 4B4NA 2GOLB 5HGOA 4WYMA 4PH3A 5HGLA 5HGKA 3MGEA 1M9CC 4DGEC 1M9EC 2XGVA 3NTEA 4XFYA 1M9FC 4U0DA 2XGYA 4XFXA 2XDEA 4DGAC 2V4XA 2M8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HTW A;  4U0A A;  3P05 A;  1EM9 A;  2PWM A;  1AFV A;  1U7K A;  4INB A;  1M9D C;  1M9Y C;  1AK4 C;  1D1D A;  2X82 A;  2LF4 A;  1G03 A;  4U0F A;  1L6N A;  5HGN A;  1P7N A;  4XFZ A;  4U0C A;  2PWO A;  4PH2 A;  2EIA A;  1QRJ A;  4PH0 A;  2M8N A;  1E6J P;  3H4E A;  4E92 A;  2JPR A;  2Y4Z A;  4U0B A;  2KGF A;  4XRO A;  4E91 A;  2GON A;  4NX4 C;  2XGU A;  1GWP A;  1M9X C;  2M8P A;  5JPA A;  4LQW C;  4U0E A;  1EIA A;  2WLV B;  4QNB A;  2PXR C;  2X2D D;  4J93 A;  5HGM A;  2WLV A;  2X83 A;  4XRQ A;  3BP9 A;  3H47 A;  4B4N A;  2GOL B;  5HGO A;  4WYM A;  4PH3 A;  5HGL A;  5HGK A;  3MGE A;  1M9C C;  4DGE C;  1M9E C;  2XGV A;  3NTE A;  4XFY A;  1M9F C;  4U0D A;  2XGY A;  4XFX A;  2XDE A;  4DGA C;  2V4X A;  2M8L A; 
#chains in the Genus database with same CATH topology
 4HTW A;  4U0A A;  3P05 A;  1EM9 A;  2PWM A;  1AFV A;  1U7K A;  4INB A;  1M9D C;  1M9Y C;  1AK4 C;  1D1D A;  2X82 A;  2LF4 A;  1G03 A;  4U0F A;  1L6N A;  5HGN A;  1P7N A;  4XFZ A;  4U0C A;  2PWO A;  4PH2 A;  2EIA A;  1QRJ A;  4PH0 A;  2M8N A;  1E6J P;  3H4E A;  4E92 A;  2JPR A;  2Y4Z A;  4U0B A;  2KGF A;  4XRO A;  4E91 A;  2GON A;  4NX4 C;  2XGU A;  1GWP A;  1M9X C;  2M8P A;  5JPA A;  4LQW C;  4U0E A;  1EIA A;  2WLV B;  4QNB A;  2PXR C;  2X2D D;  4J93 A;  5HGM A;  2WLV A;  2X83 A;  4XRQ A;  3BP9 A;  3H47 A;  4B4N A;  2GOL B;  5HGO A;  4WYM A;  4PH3 A;  5HGL A;  5HGK A;  3MGE A;  1M9C C;  4DGE C;  1M9E C;  2XGV A;  3NTE A;  4XFY A;  1M9F C;  4U0D A;  2XGY A;  4XFX A;  2XDE A;  4DGA C;  2V4X A;  2M8L A; 
#chains in the Genus database with same CATH homology
 4HTW A;  4U0A A;  3P05 A;  1EM9 A;  2PWM A;  1AFV A;  1U7K A;  4INB A;  1M9D C;  1M9Y C;  1AK4 C;  1D1D A;  2X82 A;  2LF4 A;  1G03 A;  4U0F A;  1L6N A;  5HGN A;  1P7N A;  4XFZ A;  4U0C A;  2PWO A;  4PH2 A;  2EIA A;  1QRJ A;  4PH0 A;  2M8N A;  1E6J P;  3H4E A;  4E92 A;  2JPR A;  2Y4Z A;  4U0B A;  2KGF A;  4XRO A;  4E91 A;  2GON A;  4NX4 C;  2XGU A;  1GWP A;  1M9X C;  2M8P A;  5JPA A;  4LQW C;  4U0E A;  1EIA A;  2WLV B;  4QNB A;  2PXR C;  2X2D D;  4J93 A;  5HGM A;  2WLV A;  2X83 A;  4XRQ A;  3BP9 A;  3H47 A;  4B4N A;  2GOL B;  5HGO A;  4WYM A;  4PH3 A;  5HGL A;  5HGK A;  3MGE A;  1M9C C;  4DGE C;  1M9E C;  2XGV A;  3NTE A;  4XFY A;  1M9F C;  4U0D A;  2XGY A;  4XFX A;  2XDE A;  4DGA C;  2V4X A;  2M8L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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