2WLVB

Structure of the n-terminal capsid domain of hiv-2
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
144
structure length
144
Chain Sequence
PVQHVGGTYTHIPLSPRTLNAWVKLVQQKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAAEWDVQHPIPGPLPAGQLREPRGSDIAGTTSTVEEQIQWMFRPQNPVPVGNIYRRWIQIGLQKCVRMY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
source organism Human immunodeficiency virus type 2 (isolate d194)
publication title Active Site Remodelling Switches HIV Specificity of Antiretroviral Trimcyp
pubmed doi rcsb
molecule keywords GAG POLYPROTEIN
total genus 53
structure length 144
sequence length 144
ec nomenclature
pdb deposition date 2009-06-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2wlvB00
4PH3A 1M9FC 2PWOA 1EIAA 3H47A 1U7KA 3H4EA 4QNBA 2WLVA 2GOLB 4NX4C 2XGUA 1M9DC 1AK4C 4B4NA 2EIAA 5HGNA 1M9EC 4U0EA 4E91A 2XGYA 4HTWA 1QRJA 2KGFA 2GONA 4XFZA 4DGEC 1G03A 3P05A 2JPRA 4PH0A 4XRQA 2PXRC 4XFYA 4U0DA 2WLVB 5HGKA 1D1DA 1M9YC 2V4XA 4U0AA 4LQWC 1EM9A 1M9XC 4XFXA 5HGLA 2M8PA 1E6JP 2XDEA 4WYMA 5HGOA 4INBA 1GWPA 4U0BA 2XGVA 4E92A 4PH2A 2M8NA 2X82A 4J93A 4U0CA 1M9CC 4XROA 3BP9A 2X83A 4DGAC 1P7NA 5JPAA 1AFVA 5HGMA 2PWMA 2Y4ZA 2X2DD 3MGEA 2M8LA 4U0FA 1L6NA 2LF4A 3NTEA
chains in the Genus database with same CATH superfamily
4PH3A 1M9FC 2PWOA 1EIAA 3H47A 1U7KA 3H4EA 4QNBA 2WLVA 2GOLB 4NX4C 2XGUA 1M9DC 1AK4C 4B4NA 2EIAA 5HGNA 1M9EC 4U0EA 4E91A 2XGYA 4HTWA 1QRJA 2KGFA 2GONA 4XFZA 4DGEC 1G03A 3P05A 2JPRA 4PH0A 4XRQA 2PXRC 4XFYA 4U0DA 2WLVB 5HGKA 1D1DA 1M9YC 2V4XA 4U0AA 4LQWC 1EM9A 1M9XC 4XFXA 5HGLA 2M8PA 1E6JP 2XDEA 4WYMA 5HGOA 4INBA 1GWPA 4U0BA 2XGVA 4E92A 4PH2A 2M8NA 2X82A 4J93A 4U0CA 1M9CC 4XROA 3BP9A 2X83A 4DGAC 1P7NA 5JPAA 1AFVA 5HGMA 2PWMA 2Y4ZA 2X2DD 3MGEA 2M8LA 4U0FA 1L6NA 2LF4A 3NTEA
chains in the Genus database with same CATH topology
4PH3A 1M9FC 2PWOA 1EIAA 3H47A 1U7KA 3H4EA 4QNBA 2WLVA 2GOLB 4NX4C 2XGUA 1M9DC 1AK4C 4B4NA 2EIAA 5HGNA 1M9EC 4U0EA 4E91A 2XGYA 4HTWA 1QRJA 2KGFA 2GONA 4XFZA 4DGEC 1G03A 3P05A 2JPRA 4PH0A 4XRQA 2PXRC 4XFYA 4U0DA 2WLVB 5HGKA 1D1DA 1M9YC 2V4XA 4U0AA 4LQWC 1EM9A 1M9XC 4XFXA 5HGLA 2M8PA 1E6JP 2XDEA 4WYMA 5HGOA 4INBA 1GWPA 4U0BA 2XGVA 4E92A 4PH2A 2M8NA 2X82A 4J93A 4U0CA 1M9CC 4XROA 3BP9A 2X83A 4DGAC 1P7NA 5JPAA 1AFVA 5HGMA 2PWMA 2Y4ZA 2X2DD 3MGEA 2M8LA 4U0FA 1L6NA 2LF4A 3NTEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PH3 A;  1M9F C;  2PWO A;  1EIA A;  3H47 A;  1U7K A;  3H4E A;  4QNB A;  2WLV A;  2GOL B;  4NX4 C;  2XGU A;  1M9D C;  1AK4 C;  4B4N A;  2EIA A;  5HGN A;  1M9E C;  4U0E A;  4E91 A;  2XGY A;  4HTW A;  1QRJ A;  2KGF A;  2GON A;  4XFZ A;  4DGE C;  1G03 A;  3P05 A;  2JPR A;  4PH0 A;  4XRQ A;  2PXR C;  4XFY A;  4U0D A;  2WLV B;  5HGK A;  1D1D A;  1M9Y C;  2V4X A;  4U0A A;  4LQW C;  1EM9 A;  1M9X C;  4XFX A;  5HGL A;  2M8P A;  1E6J P;  2XDE A;  4WYM A;  5HGO A;  4INB A;  1GWP A;  4U0B A;  2XGV A;  4E92 A;  4PH2 A;  2M8N A;  2X82 A;  4J93 A;  4U0C A;  1M9C C;  4XRO A;  3BP9 A;  2X83 A;  4DGA C;  1P7N A;  5JPA A;  1AFV A;  5HGM A;  2PWM A;  2Y4Z A;  2X2D D;  3MGE A;  2M8L A;  4U0F A;  1L6N A;  2LF4 A;  3NTE A; 
#chains in the Genus database with same CATH topology
 4PH3 A;  1M9F C;  2PWO A;  1EIA A;  3H47 A;  1U7K A;  3H4E A;  4QNB A;  2WLV A;  2GOL B;  4NX4 C;  2XGU A;  1M9D C;  1AK4 C;  4B4N A;  2EIA A;  5HGN A;  1M9E C;  4U0E A;  4E91 A;  2XGY A;  4HTW A;  1QRJ A;  2KGF A;  2GON A;  4XFZ A;  4DGE C;  1G03 A;  3P05 A;  2JPR A;  4PH0 A;  4XRQ A;  2PXR C;  4XFY A;  4U0D A;  2WLV B;  5HGK A;  1D1D A;  1M9Y C;  2V4X A;  4U0A A;  4LQW C;  1EM9 A;  1M9X C;  4XFX A;  5HGL A;  2M8P A;  1E6J P;  2XDE A;  4WYM A;  5HGO A;  4INB A;  1GWP A;  4U0B A;  2XGV A;  4E92 A;  4PH2 A;  2M8N A;  2X82 A;  4J93 A;  4U0C A;  1M9C C;  4XRO A;  3BP9 A;  2X83 A;  4DGA C;  1P7N A;  5JPA A;  1AFV A;  5HGM A;  2PWM A;  2Y4Z A;  2X2D D;  3MGE A;  2M8L A;  4U0F A;  1L6N A;  2LF4 A;  3NTE A; 
#chains in the Genus database with same CATH homology
 4PH3 A;  1M9F C;  2PWO A;  1EIA A;  3H47 A;  1U7K A;  3H4E A;  4QNB A;  2WLV A;  2GOL B;  4NX4 C;  2XGU A;  1M9D C;  1AK4 C;  4B4N A;  2EIA A;  5HGN A;  1M9E C;  4U0E A;  4E91 A;  2XGY A;  4HTW A;  1QRJ A;  2KGF A;  2GON A;  4XFZ A;  4DGE C;  1G03 A;  3P05 A;  2JPR A;  4PH0 A;  4XRQ A;  2PXR C;  4XFY A;  4U0D A;  2WLV B;  5HGK A;  1D1D A;  1M9Y C;  2V4X A;  4U0A A;  4LQW C;  1EM9 A;  1M9X C;  4XFX A;  5HGL A;  2M8P A;  1E6J P;  2XDE A;  4WYM A;  5HGO A;  4INB A;  1GWP A;  4U0B A;  2XGV A;  4E92 A;  4PH2 A;  2M8N A;  2X82 A;  4J93 A;  4U0C A;  1M9C C;  4XRO A;  3BP9 A;  2X83 A;  4DGA C;  1P7N A;  5JPA A;  1AFV A;  5HGM A;  2PWM A;  2Y4Z A;  2X2D D;  3MGE A;  2M8L A;  4U0F A;  1L6N A;  2LF4 A;  3NTE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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