2WN4A

Structural basis for substrate recognition in the enzymatic component of adp-ribosyltransferase toxin cdta from clostridium difficile
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
393
structure length
391
Chain Sequence
RKEAERIEQKLERSEKEALESYKKDSVEISKYSQTRNYFYDYQIEANSREKEYKELRNAISKNKIDKPMYVYYFESPEKFAFNKVIRTENQNEISLEKFNEFKETIQNKLFKQDGFKDISLYEPGKGDEKPTPLLMHLKLPRNTGMLPYTNTVSTLIEQGYSIKIDKIVRIVIDGKHYIKAEASVVSSLDFKDDVSKGDSWGKANYNDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPVNNPNPELDSKITNIENALKREPIPTNLTVYRRSGPQEFGLTLTSPEYDFNKLENIDAFKSKWEGQALSYPNFISTSIGSVNMSAFAKRKIVLRITIPKGSPGAYLSAIPGYAGEYEVLLNHGSKFKINKIDSYKDGTITKLIVDATLIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords ADP-RIBOSYLTRANSFERASE ENZYMATIC COMPONENT
publication title Structural Basis for Substrate Recognition in the Enzymatic Component of Adp-Ribosyltransferase Toxin Cdta from Clostridium Difficile.
pubmed doi rcsb
source organism Clostridium difficile
total genus 134
structure length 391
sequence length 393
ec nomenclature
pdb deposition date 2009-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2wn4A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2wn4A01
4PKTA 4H0XA 4TR5A 2WN6A 4GF1A 4PKSA 4PKVA 3BUZA 5H04A 1GXZA 1OJZA 4XM7A 1QS2A 1OJQA 1G24A 4PKWA 1GZFA 4XSHB 2WN8A 2BOVB 2GWLA 2C8CA 1R45A 5D1SA 4GY2A 2C8BX 4FK7A 2GWMA 1GXYA 2J3VA 2WN7A 2A9KB 1GZEA 1JKYA 1R4BA 4FMLA 3BW8A 5GTTA 5D1TA 2C8AA 2C8FE 2C8EE 1J7NA 4ELNA 1PWWA 4PKQA 2WN4A 1QS1A 4XSGB 1GY0A 2A78B 4PKUA 4FXQA 2C8DA 4H0YA 1OG1A 1PWPA 5D1UA 4WF6A 4H0VA 1PWQA 4XM6A 1PWVA 2C8HA 5BWMB 2J3ZA 1YQYA 2C8GA 4H0TA 2WN5A 2J3XA 1ZXVA 1GIRA 4XM8A 1UZIA 2C89A 4PKRA 4H03A 1GIQA 5DZQA 1OG3A 3NTSA 5H03A 1PWUA 1OG4A 4DV8A 3U0JA
chains in the Genus database with same CATH superfamily
4PKTA 4H0XA 4TR5A 2WN6A 4GF1A 4PKSA 4PKVA 3BUZA 5H04A 1GXZA 1OJZA 4XM7A 1QS2A 1OJQA 1G24A 4PKWA 1GZFA 4XSHB 2WN8A 2BOVB 2GWLA 2C8CA 1R45A 5D1SA 4GY2A 2C8BX 4FK7A 2GWMA 1GXYA 2J3VA 2WN7A 2A9KB 1GZEA 1JKYA 1R4BA 4FMLA 3BW8A 5GTTA 5D1TA 2C8AA 2C8FE 2C8EE 1J7NA 4ELNA 1PWWA 4PKQA 2WN4A 1QS1A 4XSGB 1GY0A 2A78B 4PKUA 4FXQA 2C8DA 4H0YA 1OG1A 1PWPA 5D1UA 4WF6A 4H0VA 1PWQA 4XM6A 1PWVA 2C8HA 5BWMB 2J3ZA 1YQYA 2C8GA 4H0TA 2WN5A 2J3XA 1ZXVA 1GIRA 4XM8A 1UZIA 2C89A 4PKRA 4H03A 1GIQA 5DZQA 1OG3A 3NTSA 5H03A 1PWUA 1OG4A 4DV8A 3U0JA
chains in the Genus database with same CATH topology
4PKTA 4H0XA 4TR5A 2WN6A 4GF1A 4PKSA 4PKVA 3BUZA 5H04A 1GXZA 1OJZA 4XM7A 1QS2A 1OJQA 1G24A 4PKWA 1GZFA 4XSHB 2WN8A 2BOVB 2GWLA 2C8CA 1R45A 5D1SA 4GY2A 2C8BX 4FK7A 2GWMA 1GXYA 2J3VA 2WN7A 2A9KB 1GZEA 1JKYA 1R4BA 4FMLA 3BW8A 5GTTA 5D1TA 2C8AA 2C8FE 2C8EE 1J7NA 4ELNA 1PWWA 4PKQA 2WN4A 1QS1A 4XSGB 1GY0A 2A78B 4PKUA 4FXQA 2C8DA 4H0YA 1OG1A 1PWPA 5D1UA 4WF6A 4H0VA 1PWQA 4XM6A 1PWVA 2C8HA 5BWMB 2J3ZA 1YQYA 2C8GA 4H0TA 2WN5A 2J3XA 1ZXVA 1GIRA 4XM8A 1UZIA 2C89A 4PKRA 4H03A 1GIQA 5DZQA 1OG3A 3NTSA 5H03A 1PWUA 1OG4A 4DV8A 3U0JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PKT A;  4H0X A;  4TR5 A;  2WN6 A;  4GF1 A;  4PKS A;  4PKV A;  3BUZ A;  5H04 A;  1GXZ A;  1OJZ A;  4XM7 A;  1QS2 A;  1OJQ A;  1G24 A;  4PKW A;  1GZF A;  4XSH B;  2WN8 A;  2BOV B;  2GWL A;  2C8C A;  1R45 A;  5D1S A;  4GY2 A;  2C8B X;  4FK7 A;  2GWM A;  1GXY A;  2J3V A;  2WN7 A;  2A9K B;  1GZE A;  1JKY A;  1R4B A;  4FML A;  3BW8 A;  5GTT A;  5D1T A;  2C8A A;  2C8F E;  2C8E E;  1J7N A;  4ELN A;  1PWW A;  4PKQ A;  2WN4 A;  1QS1 A;  4XSG B;  1GY0 A;  2A78 B;  4PKU A;  4FXQ A;  2C8D A;  4H0Y A;  1OG1 A;  1PWP A;  5D1U A;  4WF6 A;  4H0V A;  1PWQ A;  4XM6 A;  1PWV A;  2C8H A;  5BWM B;  2J3Z A;  1YQY A;  2C8G A;  4H0T A;  2WN5 A;  2J3X A;  1ZXV A;  1GIR A;  4XM8 A;  1UZI A;  2C89 A;  4PKR A;  4H03 A;  1GIQ A;  5DZQ A;  1OG3 A;  3NTS A;  5H03 A;  1PWU A;  1OG4 A;  4DV8 A;  3U0J A; 
#chains in the Genus database with same CATH topology
 4PKT A;  4H0X A;  4TR5 A;  2WN6 A;  4GF1 A;  4PKS A;  4PKV A;  3BUZ A;  5H04 A;  1GXZ A;  1OJZ A;  4XM7 A;  1QS2 A;  1OJQ A;  1G24 A;  4PKW A;  1GZF A;  4XSH B;  2WN8 A;  2BOV B;  2GWL A;  2C8C A;  1R45 A;  5D1S A;  4GY2 A;  2C8B X;  4FK7 A;  2GWM A;  1GXY A;  2J3V A;  2WN7 A;  2A9K B;  1GZE A;  1JKY A;  1R4B A;  4FML A;  3BW8 A;  5GTT A;  5D1T A;  2C8A A;  2C8F E;  2C8E E;  1J7N A;  4ELN A;  1PWW A;  4PKQ A;  2WN4 A;  1QS1 A;  4XSG B;  1GY0 A;  2A78 B;  4PKU A;  4FXQ A;  2C8D A;  4H0Y A;  1OG1 A;  1PWP A;  5D1U A;  4WF6 A;  4H0V A;  1PWQ A;  4XM6 A;  1PWV A;  2C8H A;  5BWM B;  2J3Z A;  1YQY A;  2C8G A;  4H0T A;  2WN5 A;  2J3X A;  1ZXV A;  1GIR A;  4XM8 A;  1UZI A;  2C89 A;  4PKR A;  4H03 A;  1GIQ A;  5DZQ A;  1OG3 A;  3NTS A;  5H03 A;  1PWU A;  1OG4 A;  4DV8 A;  3U0J A; 
#chains in the Genus database with same CATH homology
 4PKT A;  4H0X A;  4TR5 A;  2WN6 A;  4GF1 A;  4PKS A;  4PKV A;  3BUZ A;  5H04 A;  1GXZ A;  1OJZ A;  4XM7 A;  1QS2 A;  1OJQ A;  1G24 A;  4PKW A;  1GZF A;  4XSH B;  2WN8 A;  2BOV B;  2GWL A;  2C8C A;  1R45 A;  5D1S A;  4GY2 A;  2C8B X;  4FK7 A;  2GWM A;  1GXY A;  2J3V A;  2WN7 A;  2A9K B;  1GZE A;  1JKY A;  1R4B A;  4FML A;  3BW8 A;  5GTT A;  5D1T A;  2C8A A;  2C8F E;  2C8E E;  1J7N A;  4ELN A;  1PWW A;  4PKQ A;  2WN4 A;  1QS1 A;  4XSG B;  1GY0 A;  2A78 B;  4PKU A;  4FXQ A;  2C8D A;  4H0Y A;  1OG1 A;  1PWP A;  5D1U A;  4WF6 A;  4H0V A;  1PWQ A;  4XM6 A;  1PWV A;  2C8H A;  5BWM B;  2J3Z A;  1YQY A;  2C8G A;  4H0T A;  2WN5 A;  2J3X A;  1ZXV A;  1GIR A;  4XM8 A;  1UZI A;  2C89 A;  4PKR A;  4H03 A;  1GIQ A;  5DZQ A;  1OG3 A;  3NTS A;  5H03 A;  1PWU A;  1OG4 A;  4DV8 A;  3U0J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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