2WNJA

Crystal structure of aplysia achbp in complex with dmxba
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
209
structure length
209
Chain Sequence
LHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Structural Determinants for Interaction of Partial Agonists with Acetylcholine Binding Protein and Neuronal Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
source organism Aplysia californica
total genus 52
structure length 209
sequence length 209
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2009-07-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2wnjA00
2BG9E 2W8FA 4LMKA 4ZK1A 2XYTA 2WN9A 4ZJTA 4ZZCA 5AINA 5J5IA 2QC1B 4AFHA 5HEHA 4ILAA 4HFDA 5TVCA 3UQ4A 2BYNA 1UX2A 5LG3A 3U8JA 4QH4A 5SYOA 5AFMA 4TWDA 5AFMB 5HCMA 2BG9B 3WTIA 4DBMA 4HFHA 1UW6A 5AFHA 3WTNA 5HEJA 3SQ9A 2XNUA 4UM1A 2Y58A 3WTOA 4QACA 4ZRUA 3EAMA 2YMEA 3EHZA 2XQ9A 5AFKA 5BP0A 3IGQA 3RI5A 2XZ6A 4COFA 5HEUA 4D01A 5IUXA 5KZUA 4NPPA 4B5DA 4NZBA 2VL0A 3EI0A 4X5TA 3TLUA 2XNVA 3PEOA 2BJ0A 5L4EA 2XQ3A 4ZR6A 4F8HA 3UU8A 3JAEA 5BW2A 4QH1A 2YN6A 4XHEA 5BRXA 2BYPA 3JADA 2XQ6A 2X00A 5J5GA 4HFBA 4HQPA 3TLWA 3C84A 4Z91A 3GUAA 5AFJA 3JAFA 4PIRA 4BQTA 4UM3A 3SH1A 5FJVA 4HFIA 3U8LA 2XYSA 2PH9A 4A97A 2PGZA 3TLSA 3WIPA 5JMEA 2XQ7A 3SQ6A 4AFTA 4ZJSA 2BYQA 4ILCA 4Z90A 4HFCA 3PMZA 4TNVA 4XK9A 3RQWA 4UXUA 3WTKA 4IL9A 4LMJA 5L47A 2ZJVA 4ILBA 5CFBA 5HEOA 3LSVA 4UM3S 4TWFA 4EZ1A 2XNTA 2YOEA 3SIOA 4A98A 5L4HA 3C79A 2Y54A 2WNLA 3WTLA 4TWHA 2BYRA 2BR7A 2XQ4A 3ZDHA 1UV6A 4WV9A 3U8NA 2UZ6A 3U8KA 2YMDA 3RHWA 4QAAA 2X00D 3UQ7A 5J0ZA 2XQAA 2Y7YA 3T4MA 5HCJA 5LXBA 3RQUA 3WTJA 4LMLA 2BG9C 2YKSA 4UM3P 5HEGA 3TLTA 3UU5A 5J5HA 2W8GA 2XQ8A 3P50A 3UU3A 5AFLA 2Y57A 2WNCA 2BG9A 2Y56A 3UU6A 4BFQA 4ZK4A 1I9BA 3WTMA 5AFNA 2WNJA 5J5FA 2XZ5A 4ZZBA 2BYSA 2WZYA 2ZJUA 4TNWA 3U8MA 3UU4A 3UUBA 5CO5A 5KE4A 4QH5A 4AFGA 3P4WA 3RIAA 4ALXA 2C9TA 4FRRA 4QABA 2XQ5A 4UY2A 3ZDGA 3RIFA 4IREA 4IL4A 3TLVA 2BR8A 4HFEA 3WTHA 3ZKRA
chains in the Genus database with same CATH superfamily
2BG9E 2W8FA 4LMKA 4ZK1A 2XYTA 2WN9A 4ZJTA 4ZZCA 5AINA 5J5IA 2QC1B 4AFHA 5HEHA 4ILAA 4HFDA 5TVCA 3UQ4A 2BYNA 1UX2A 5LG3A 3U8JA 4QH4A 5SYOA 5AFMA 4TWDA 5AFMB 5HCMA 2BG9B 3WTIA 4DBMA 4HFHA 1UW6A 5AFHA 3WTNA 5HEJA 3SQ9A 2XNUA 4UM1A 2Y58A 3WTOA 4QACA 4ZRUA 3EAMA 2YMEA 3EHZA 2XQ9A 5AFKA 5BP0A 3IGQA 3RI5A 2XZ6A 4COFA 5HEUA 4D01A 5IUXA 5KZUA 4NPPA 4B5DA 4NZBA 2VL0A 3EI0A 4X5TA 3TLUA 2XNVA 3PEOA 2BJ0A 5L4EA 2XQ3A 4ZR6A 4F8HA 3UU8A 3JAEA 5BW2A 4QH1A 2YN6A 4XHEA 5BRXA 2BYPA 3JADA 2XQ6A 2X00A 5J5GA 4HFBA 4HQPA 3TLWA 3C84A 4Z91A 3GUAA 5AFJA 3JAFA 4PIRA 4BQTA 4UM3A 3SH1A 5FJVA 4HFIA 3U8LA 2XYSA 2PH9A 4A97A 2PGZA 3TLSA 3WIPA 5JMEA 2XQ7A 3SQ6A 4AFTA 4ZJSA 2BYQA 4ILCA 4Z90A 4HFCA 3PMZA 4TNVA 4XK9A 3RQWA 4UXUA 3WTKA 4IL9A 4LMJA 5L47A 2ZJVA 4ILBA 5CFBA 5HEOA 3LSVA 4UM3S 4TWFA 4EZ1A 2XNTA 2YOEA 3SIOA 4A98A 5L4HA 3C79A 2Y54A 2WNLA 3WTLA 4TWHA 2BYRA 2BR7A 2XQ4A 3ZDHA 1UV6A 4WV9A 3U8NA 2UZ6A 3U8KA 2YMDA 3RHWA 4QAAA 2X00D 3UQ7A 5J0ZA 2XQAA 2Y7YA 3T4MA 5HCJA 5LXBA 3RQUA 3WTJA 4LMLA 2BG9C 2YKSA 4UM3P 5HEGA 3TLTA 3UU5A 5J5HA 2W8GA 2XQ8A 3P50A 3UU3A 5AFLA 2Y57A 2WNCA 2BG9A 2Y56A 3UU6A 4BFQA 4ZK4A 1I9BA 3WTMA 5AFNA 2WNJA 5J5FA 2XZ5A 4ZZBA 2BYSA 2WZYA 2ZJUA 4TNWA 3U8MA 3UU4A 3UUBA 5CO5A 5KE4A 4QH5A 4AFGA 3P4WA 3RIAA 4ALXA 2C9TA 4FRRA 4QABA 2XQ5A 4UY2A 3ZDGA 3RIFA 4IREA 4IL4A 3TLVA 2BR8A 4HFEA 3WTHA 3ZKRA
chains in the Genus database with same CATH topology
2BG9E 2W8FA 4LMKA 4ZK1A 2XYTA 2WN9A 4ZJTA 4ZZCA 5AINA 5J5IA 2QC1B 4AFHA 5HEHA 4ILAA 4HFDA 5TVCA 3UQ4A 2BYNA 1UX2A 5LG3A 3U8JA 4QH4A 5SYOA 5AFMA 4TWDA 5AFMB 5HCMA 2BG9B 3WTIA 4DBMA 4HFHA 1UW6A 5AFHA 3WTNA 5HEJA 3SQ9A 2XNUA 4UM1A 2Y58A 3WTOA 4QACA 4ZRUA 3EAMA 2YMEA 3EHZA 2XQ9A 5AFKA 5BP0A 3IGQA 3RI5A 2XZ6A 4COFA 5HEUA 4D01A 5IUXA 5KZUA 4NPPA 4B5DA 4NZBA 2VL0A 3EI0A 4X5TA 3TLUA 2XNVA 3PEOA 2BJ0A 5L4EA 2XQ3A 4ZR6A 4F8HA 3UU8A 3JAEA 5BW2A 4QH1A 2YN6A 4XHEA 5BRXA 2BYPA 3JADA 2XQ6A 2X00A 5J5GA 4HFBA 4HQPA 3TLWA 3C84A 4Z91A 3GUAA 5AFJA 3JAFA 4PIRA 4BQTA 4UM3A 3SH1A 5FJVA 4HFIA 3U8LA 2XYSA 2PH9A 4A97A 2PGZA 3TLSA 3WIPA 5JMEA 2XQ7A 3SQ6A 4AFTA 4ZJSA 2BYQA 4ILCA 4Z90A 4HFCA 3PMZA 4TNVA 4XK9A 3RQWA 4UXUA 3WTKA 4IL9A 4LMJA 5L47A 2ZJVA 4ILBA 5CFBA 5HEOA 3LSVA 4UM3S 4TWFA 4EZ1A 2XNTA 2YOEA 3SIOA 4A98A 5L4HA 3C79A 2Y54A 2WNLA 3WTLA 4TWHA 2BYRA 2BR7A 2XQ4A 3ZDHA 1UV6A 4WV9A 3U8NA 2UZ6A 3U8KA 2YMDA 3RHWA 4QAAA 2X00D 3UQ7A 5J0ZA 2XQAA 2Y7YA 3T4MA 5HCJA 5LXBA 3RQUA 3WTJA 4LMLA 2BG9C 2YKSA 4UM3P 5HEGA 3TLTA 3UU5A 5J5HA 2W8GA 2XQ8A 3P50A 3UU3A 5AFLA 2Y57A 2WNCA 2BG9A 2Y56A 3UU6A 4BFQA 4ZK4A 1I9BA 3WTMA 5AFNA 2WNJA 5J5FA 2XZ5A 4ZZBA 2BYSA 2WZYA 2ZJUA 4TNWA 3U8MA 3UU4A 3UUBA 5CO5A 5KE4A 4QH5A 4AFGA 3P4WA 3RIAA 4ALXA 2C9TA 4FRRA 4QABA 2XQ5A 4UY2A 3ZDGA 3RIFA 4IREA 4IL4A 3TLVA 2BR8A 4HFEA 3WTHA 3ZKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BG9 E;  2W8F A;  4LMK A;  4ZK1 A;  2XYT A;  2WN9 A;  4ZJT A;  4ZZC A;  5AIN A;  5J5I A;  2QC1 B;  4AFH A;  5HEH A;  4ILA A;  4HFD A;  5TVC A;  3UQ4 A;  2BYN A;  1UX2 A;  5LG3 A;  3U8J A;  4QH4 A;  5SYO A;  5AFM A;  4TWD A;  5AFM B;  5HCM A;  2BG9 B;  3WTI A;  4DBM A;  4HFH A;  1UW6 A;  5AFH A;  3WTN A;  5HEJ A;  3SQ9 A;  2XNU A;  4UM1 A;  2Y58 A;  3WTO A;  4QAC A;  4ZRU A;  3EAM A;  2YME A;  3EHZ A;  2XQ9 A;  5AFK A;  5BP0 A;  3IGQ A;  3RI5 A;  2XZ6 A;  4COF A;  5HEU A;  4D01 A;  5IUX A;  5KZU A;  4NPP A;  4B5D A;  4NZB A;  2VL0 A;  3EI0 A;  4X5T A;  3TLU A;  2XNV A;  3PEO A;  2BJ0 A;  5L4E A;  2XQ3 A;  4ZR6 A;  4F8H A;  3UU8 A;  3JAE A;  5BW2 A;  4QH1 A;  2YN6 A;  4XHE A;  5BRX A;  2BYP A;  3JAD A;  2XQ6 A;  2X00 A;  5J5G A;  4HFB A;  4HQP A;  3TLW A;  3C84 A;  4Z91 A;  3GUA A;  5AFJ A;  3JAF A;  4PIR A;  4BQT A;  4UM3 A;  3SH1 A;  5FJV A;  4HFI A;  3U8L A;  2XYS A;  2PH9 A;  4A97 A;  2PGZ A;  3TLS A;  3WIP A;  5JME A;  2XQ7 A;  3SQ6 A;  4AFT A;  4ZJS A;  2BYQ A;  4ILC A;  4Z90 A;  4HFC A;  3PMZ A;  4TNV A;  4XK9 A;  3RQW A;  4UXU A;  3WTK A;  4IL9 A;  4LMJ A;  5L47 A;  2ZJV A;  4ILB A;  5CFB A;  5HEO A;  3LSV A;  4UM3 S;  4TWF A;  4EZ1 A;  2XNT A;  2YOE A;  3SIO A;  4A98 A;  5L4H A;  3C79 A;  2Y54 A;  2WNL A;  3WTL A;  4TWH A;  2BYR A;  2BR7 A;  2XQ4 A;  3ZDH A;  1UV6 A;  4WV9 A;  3U8N A;  2UZ6 A;  3U8K A;  2YMD A;  3RHW A;  4QAA A;  2X00 D;  3UQ7 A;  5J0Z A;  2XQA A;  2Y7Y A;  3T4M A;  5HCJ A;  5LXB A;  3RQU A;  3WTJ A;  4LML A;  2BG9 C;  2YKS A;  4UM3 P;  5HEG A;  3TLT A;  3UU5 A;  5J5H A;  2W8G A;  2XQ8 A;  3P50 A;  3UU3 A;  5AFL A;  2Y57 A;  2WNC A;  2BG9 A;  2Y56 A;  3UU6 A;  4BFQ A;  4ZK4 A;  1I9B A;  3WTM A;  5AFN A;  2WNJ A;  5J5F A;  2XZ5 A;  4ZZB A;  2BYS A;  2WZY A;  2ZJU A;  4TNW A;  3U8M A;  3UU4 A;  3UUB A;  5CO5 A;  5KE4 A;  4QH5 A;  4AFG A;  3P4W A;  3RIA A;  4ALX A;  2C9T A;  4FRR A;  4QAB A;  2XQ5 A;  4UY2 A;  3ZDG A;  3RIF A;  4IRE A;  4IL4 A;  3TLV A;  2BR8 A;  4HFE A;  3WTH A;  3ZKR A; 
#chains in the Genus database with same CATH topology
 2BG9 E;  2W8F A;  4LMK A;  4ZK1 A;  2XYT A;  2WN9 A;  4ZJT A;  4ZZC A;  5AIN A;  5J5I A;  2QC1 B;  4AFH A;  5HEH A;  4ILA A;  4HFD A;  5TVC A;  3UQ4 A;  2BYN A;  1UX2 A;  5LG3 A;  3U8J A;  4QH4 A;  5SYO A;  5AFM A;  4TWD A;  5AFM B;  5HCM A;  2BG9 B;  3WTI A;  4DBM A;  4HFH A;  1UW6 A;  5AFH A;  3WTN A;  5HEJ A;  3SQ9 A;  2XNU A;  4UM1 A;  2Y58 A;  3WTO A;  4QAC A;  4ZRU A;  3EAM A;  2YME A;  3EHZ A;  2XQ9 A;  5AFK A;  5BP0 A;  3IGQ A;  3RI5 A;  2XZ6 A;  4COF A;  5HEU A;  4D01 A;  5IUX A;  5KZU A;  4NPP A;  4B5D A;  4NZB A;  2VL0 A;  3EI0 A;  4X5T A;  3TLU A;  2XNV A;  3PEO A;  2BJ0 A;  5L4E A;  2XQ3 A;  4ZR6 A;  4F8H A;  3UU8 A;  3JAE A;  5BW2 A;  4QH1 A;  2YN6 A;  4XHE A;  5BRX A;  2BYP A;  3JAD A;  2XQ6 A;  2X00 A;  5J5G A;  4HFB A;  4HQP A;  3TLW A;  3C84 A;  4Z91 A;  3GUA A;  5AFJ A;  3JAF A;  4PIR A;  4BQT A;  4UM3 A;  3SH1 A;  5FJV A;  4HFI A;  3U8L A;  2XYS A;  2PH9 A;  4A97 A;  2PGZ A;  3TLS A;  3WIP A;  5JME A;  2XQ7 A;  3SQ6 A;  4AFT A;  4ZJS A;  2BYQ A;  4ILC A;  4Z90 A;  4HFC A;  3PMZ A;  4TNV A;  4XK9 A;  3RQW A;  4UXU A;  3WTK A;  4IL9 A;  4LMJ A;  5L47 A;  2ZJV A;  4ILB A;  5CFB A;  5HEO A;  3LSV A;  4UM3 S;  4TWF A;  4EZ1 A;  2XNT A;  2YOE A;  3SIO A;  4A98 A;  5L4H A;  3C79 A;  2Y54 A;  2WNL A;  3WTL A;  4TWH A;  2BYR A;  2BR7 A;  2XQ4 A;  3ZDH A;  1UV6 A;  4WV9 A;  3U8N A;  2UZ6 A;  3U8K A;  2YMD A;  3RHW A;  4QAA A;  2X00 D;  3UQ7 A;  5J0Z A;  2XQA A;  2Y7Y A;  3T4M A;  5HCJ A;  5LXB A;  3RQU A;  3WTJ A;  4LML A;  2BG9 C;  2YKS A;  4UM3 P;  5HEG A;  3TLT A;  3UU5 A;  5J5H A;  2W8G A;  2XQ8 A;  3P50 A;  3UU3 A;  5AFL A;  2Y57 A;  2WNC A;  2BG9 A;  2Y56 A;  3UU6 A;  4BFQ A;  4ZK4 A;  1I9B A;  3WTM A;  5AFN A;  2WNJ A;  5J5F A;  2XZ5 A;  4ZZB A;  2BYS A;  2WZY A;  2ZJU A;  4TNW A;  3U8M A;  3UU4 A;  3UUB A;  5CO5 A;  5KE4 A;  4QH5 A;  4AFG A;  3P4W A;  3RIA A;  4ALX A;  2C9T A;  4FRR A;  4QAB A;  2XQ5 A;  4UY2 A;  3ZDG A;  3RIF A;  4IRE A;  4IL4 A;  3TLV A;  2BR8 A;  4HFE A;  3WTH A;  3ZKR A; 
#chains in the Genus database with same CATH homology
 2BG9 E;  2W8F A;  4LMK A;  4ZK1 A;  2XYT A;  2WN9 A;  4ZJT A;  4ZZC A;  5AIN A;  5J5I A;  2QC1 B;  4AFH A;  5HEH A;  4ILA A;  4HFD A;  5TVC A;  3UQ4 A;  2BYN A;  1UX2 A;  5LG3 A;  3U8J A;  4QH4 A;  5SYO A;  5AFM A;  4TWD A;  5AFM B;  5HCM A;  2BG9 B;  3WTI A;  4DBM A;  4HFH A;  1UW6 A;  5AFH A;  3WTN A;  5HEJ A;  3SQ9 A;  2XNU A;  4UM1 A;  2Y58 A;  3WTO A;  4QAC A;  4ZRU A;  3EAM A;  2YME A;  3EHZ A;  2XQ9 A;  5AFK A;  5BP0 A;  3IGQ A;  3RI5 A;  2XZ6 A;  4COF A;  5HEU A;  4D01 A;  5IUX A;  5KZU A;  4NPP A;  4B5D A;  4NZB A;  2VL0 A;  3EI0 A;  4X5T A;  3TLU A;  2XNV A;  3PEO A;  2BJ0 A;  5L4E A;  2XQ3 A;  4ZR6 A;  4F8H A;  3UU8 A;  3JAE A;  5BW2 A;  4QH1 A;  2YN6 A;  4XHE A;  5BRX A;  2BYP A;  3JAD A;  2XQ6 A;  2X00 A;  5J5G A;  4HFB A;  4HQP A;  3TLW A;  3C84 A;  4Z91 A;  3GUA A;  5AFJ A;  3JAF A;  4PIR A;  4BQT A;  4UM3 A;  3SH1 A;  5FJV A;  4HFI A;  3U8L A;  2XYS A;  2PH9 A;  4A97 A;  2PGZ A;  3TLS A;  3WIP A;  5JME A;  2XQ7 A;  3SQ6 A;  4AFT A;  4ZJS A;  2BYQ A;  4ILC A;  4Z90 A;  4HFC A;  3PMZ A;  4TNV A;  4XK9 A;  3RQW A;  4UXU A;  3WTK A;  4IL9 A;  4LMJ A;  5L47 A;  2ZJV A;  4ILB A;  5CFB A;  5HEO A;  3LSV A;  4UM3 S;  4TWF A;  4EZ1 A;  2XNT A;  2YOE A;  3SIO A;  4A98 A;  5L4H A;  3C79 A;  2Y54 A;  2WNL A;  3WTL A;  4TWH A;  2BYR A;  2BR7 A;  2XQ4 A;  3ZDH A;  1UV6 A;  4WV9 A;  3U8N A;  2UZ6 A;  3U8K A;  2YMD A;  3RHW A;  4QAA A;  2X00 D;  3UQ7 A;  5J0Z A;  2XQA A;  2Y7Y A;  3T4M A;  5HCJ A;  5LXB A;  3RQU A;  3WTJ A;  4LML A;  2BG9 C;  2YKS A;  4UM3 P;  5HEG A;  3TLT A;  3UU5 A;  5J5H A;  2W8G A;  2XQ8 A;  3P50 A;  3UU3 A;  5AFL A;  2Y57 A;  2WNC A;  2BG9 A;  2Y56 A;  3UU6 A;  4BFQ A;  4ZK4 A;  1I9B A;  3WTM A;  5AFN A;  2WNJ A;  5J5F A;  2XZ5 A;  4ZZB A;  2BYS A;  2WZY A;  2ZJU A;  4TNW A;  3U8M A;  3UU4 A;  3UUB A;  5CO5 A;  5KE4 A;  4QH5 A;  4AFG A;  3P4W A;  3RIA A;  4ALX A;  2C9T A;  4FRR A;  4QAB A;  2XQ5 A;  4UY2 A;  3ZDG A;  3RIF A;  4IRE A;  4IL4 A;  3TLV A;  2BR8 A;  4HFE A;  3WTH A;  3ZKR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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