2WP4A

Crystal structure of rv3119 from mycobacterium tuberculosis
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
128
structure length
121
Chain Sequence
YPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords MOLYBDOPTERIN-CONVERTING FACTOR SUBUNIT 2 1
publication title Crystal Structure of Rv3119 from Mycobacterium Tuberculosis
rcsb
source organism Mycobacterium tuberculosis
total genus 32
structure length 121
sequence length 128
chains with identical sequence B
ec nomenclature ec 2.8.1.12: Molybdopterin synthase.
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02391 MoaE MoaE protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.40 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Molybdopterin biosynthesis MoaE subunit 2wp4A00
3RPFA 2OMDA 5MPOC 1FMAE 1FM0E 1NVJA 1NVIE 2Q5WE 2WP4A 3BIIE 2QIEA 4AP8A
chains in the Genus database with same CATH superfamily
2W54B 3B9JC 1N63B 5MPOC 3VMMA 3FC4A 4US9A 3PIOJ 1Q86J 1N8RJ 2WK6A 1YTDA 4LHMA 4C7YA 4GA6A 2QEXH 5HUOA 1QAPA 3CCLH 2ZJPJ 4ZOHA 3G71H 4XR5A 1VQ5H 1M1KJ 1FIQC 2JBMA 3CCQH 3G6EH 1QPNA 1YJ9H 1OTPA 2B7QA 1M90J 1X1OA 5HL7J 1Q7YJ 4IOCJ 1FM0E 3AM9A 1VQ8H 4U67J 3CCEH 1N62B 4GA4A 5GADN 1YHQH 1QPQA 3WO0A 2E3TA 1SIJA 2W55B 2ZJQJ 5JVGJ 1O4UA 2B7NA 3L4PA 2WK5A 5GAHN 1QVFH 1YTKA 1FFVB 3CXCH 4IO9J 5GAEN 4X46A 1YJNH 1VQ4H 2B7PA 3AN1A 1FMAE 3NVWC 5HULA 1VQPH 1VQMH 3CC4H 1ZXIB 3CD6H 5EY3A 1VQNH 2QIEA 5AN9F 1VLBA 1Q82J 5EP8A 5HUPA 3PAJA 3WO1A 3CCJH 1YITH 4WFBJ 2J0FA 1VDVA 5MLCO 1YTEA 1RM6A 5DM6J 3DLLJ 1V97A 1AZYA 3G4SH 2DSJA 3CC7H 4KWWA 4AP8A 1FO4A 3FAHA 5DM7J 1W2BH 4KWVA 1VQKH 1YIJH 1K9MJ 1QVGH 1FFUB 1UOUA 3I55H 2QA4H 4EAFA 4WFAJ 1KC8J 3I56H 2PA2A 1VQ7H 5AYZA 4GA5A 1S72H 2W3RB 3WNZA 1K73J 5GAGN 4WFNJ 4WF9J 3C2OA 3CCMH 1VQ6H 1NVJA 2ZJRJ 1N5WB 3J7ZM 1WKIA 3CCRH 1VQOH 3NRZC 3NVZC 4US8A 1DGJA 3H5QA 3CCSH 2OTLH 1N60B 3CCUH 4EADA 3ETRC 3C2RA 3RPFA 1KD1J 1Y69K 4UY8M 3CCVH 2OMDA 3NVVC 3NS1C 5H1SO 3C2VA 2Q5WE 3C2FA 3L0GA 5AYXA 2W3SB 3CF5J 1YJWH 1JJ2H 5JVHJ 3OW2H 2OTJH 4I9AA 1VQ9H 4USAA 2TPTA 1KQSH 3PIPJ 4YEKA 1JRPB 1QPOA 2I14A 3BIIE 3TQVA 4YYYA 3EUB4 3CPWH 1K8AJ 4IOAJ 3CMAH 4C80A 3C2EA 3CMEH 3SR6C 1N61B 3CC2H 2WP4A 1QPRA 5AYYA 3GNNA 1BRWA 3AMZA 1SB3A 1VQLH 1WYGA 3NVYC 1YI2H 1NVIE 2I1OA 4WCEJ 1Q81J 1N5XA 4C7ZA 1NJIJ 1JROB
chains in the Genus database with same CATH topology
3RPFA 2OMDA 5MPOC 1FMAE 1FM0E 1NVJA 1NVIE 2Q5WE 2WP4A 3BIIE 2QIEA 4AP8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RPF A;  2OMD A;  5MPO C;  1FMA E;  1FM0 E;  1NVJ A;  1NVI E;  2Q5W E;  2WP4 A;  3BII E;  2QIE A;  4AP8 A; 
#chains in the Genus database with same CATH topology
 2W54 B;  3B9J C;  1N63 B;  5MPO C;  3VMM A;  3FC4 A;  4US9 A;  3PIO J;  1Q86 J;  1N8R J;  2WK6 A;  1YTD A;  4LHM A;  4C7Y A;  4GA6 A;  2QEX H;  5HUO A;  1QAP A;  3CCL H;  2ZJP J;  4ZOH A;  3G71 H;  4XR5 A;  1VQ5 H;  1M1K J;  1FIQ C;  2JBM A;  3CCQ H;  3G6E H;  1QPN A;  1YJ9 H;  1OTP A;  2B7Q A;  1M90 J;  1X1O A;  5HL7 J;  1Q7Y J;  4IOC J;  1FM0 E;  3AM9 A;  1VQ8 H;  4U67 J;  3CCE H;  1N62 B;  4GA4 A;  5GAD N;  1YHQ H;  1QPQ A;  3WO0 A;  2E3T A;  1SIJ A;  2W55 B;  2ZJQ J;  5JVG J;  1O4U A;  2B7N A;  3L4P A;  2WK5 A;  5GAH N;  1QVF H;  1YTK A;  1FFV B;  3CXC H;  4IO9 J;  5GAE N;  4X46 A;  1YJN H;  1VQ4 H;  2B7P A;  3AN1 A;  1FMA E;  3NVW C;  5HUL A;  1VQP H;  1VQM H;  3CC4 H;  1ZXI B;  3CD6 H;  5EY3 A;  1VQN H;  2QIE A;  5AN9 F;  1VLB A;  1Q82 J;  5EP8 A;  5HUP A;  3PAJ A;  3WO1 A;  3CCJ H;  1YIT H;  4WFB J;  2J0F A;  1VDV A;  5MLC O;  1YTE A;  1RM6 A;  5DM6 J;  3DLL J;  1V97 A;  1AZY A;  3G4S H;  2DSJ A;  3CC7 H;  4KWW A;  4AP8 A;  1FO4 A;  3FAH A;  5DM7 J;  1W2B H;  4KWV A;  1VQK H;  1YIJ H;  1K9M J;  1QVG H;  1FFU B;  1UOU A;  3I55 H;  2QA4 H;  4EAF A;  4WFA J;  1KC8 J;  3I56 H;  2PA2 A;  1VQ7 H;  5AYZ A;  4GA5 A;  1S72 H;  2W3R B;  3WNZ A;  1K73 J;  5GAG N;  4WFN J;  4WF9 J;  3C2O A;  3CCM H;  1VQ6 H;  1NVJ A;  2ZJR J;  1N5W B;  3J7Z M;  1WKI A;  3CCR H;  1VQO H;  3NRZ C;  3NVZ C;  4US8 A;  1DGJ A;  3H5Q A;  3CCS H;  2OTL H;  1N60 B;  3CCU H;  4EAD A;  3ETR C;  3C2R A;  3RPF A;  1KD1 J;  1Y69 K;  4UY8 M;  3CCV H;  2OMD A;  3NVV C;  3NS1 C;  5H1S O;  3C2V A;  2Q5W E;  3C2F A;  3L0G A;  5AYX A;  2W3S B;  3CF5 J;  1YJW H;  1JJ2 H;  5JVH J;  3OW2 H;  2OTJ H;  4I9A A;  1VQ9 H;  4USA A;  2TPT A;  1KQS H;  3PIP J;  4YEK A;  1JRP B;  1QPO A;  2I14 A;  3BII E;  3TQV A;  4YYY A;  3EUB 4;  3CPW H;  1K8A J;  4IOA J;  3CMA H;  4C80 A;  3C2E A;  3CME H;  3SR6 C;  1N61 B;  3CC2 H;  2WP4 A;  1QPR A;  5AYY A;  3GNN A;  1BRW A;  3AMZ A;  1SB3 A;  1VQL H;  1WYG A;  3NVY C;  1YI2 H;  1NVI E;  2I1O A;  4WCE J;  1Q81 J;  1N5X A;  4C7Z A;  1NJI J;  1JRO B; 
#chains in the Genus database with same CATH homology
 3RPF A;  2OMD A;  5MPO C;  1FMA E;  1FM0 E;  1NVJ A;  1NVI E;  2Q5W E;  2WP4 A;  3BII E;  2QIE A;  4AP8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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