2WP9C

Crystal structure of the e. coli succinate:quinone oxidoreductase (sqr) sdhb his207thr mutant
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
122
structure length
122
Chain Sequence
b'QRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
publication title Perturbation of the quinone-binding site of complex II alters the electronic properties of the proximal [3Fe-4S] iron-sulfur cluster.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase
total genus 51
structure length 122
sequence length 122
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2wp9C00
1NEND 1ZP0D 2WQYC 4YSZD 3AEEC 4YTNC 4YSXC 2B76C 3AE6D 3AE8D 3CIRC 2ACZD 3VRAC 1E7PC 3AEBD 3P4QD 2H88C 3AE4C 4YSYD 4YTMC 2WDQC 3VR9C 3AE5D 3AEFC 2BS4C 3AE2C 1NEKC 1L0VD 3AE7C 2H89D 4KX6D 5C3JD 5C2TC 2FBWD 2WP9D 4YXDD 3AE1C 4YT0D 2WDVD 1KFYC 2WU2C 2WU5C 3VR8C 3P4SD 1YQ4C 1YQ3C 1ZOYD 3AEDC 3AEAD 2WDRC 3AE3C 3AEGD 3AECD 2BS3C 3P4RC 4YTMD 5C2TD 3ABVC 4YTPC 2WQYD 3AE6C 3AE8C 3P4PC 3P4QC 1KF6D 4YSXD 2B76D 3SFED 3CIRD 3SFDC 2H88D 3VRBC 2WDQD 2WS3D 3AEFD 1NENC 1ZP0C 3AE9D 2FBWC 4YSZC 2BS2C 4YT0C 1NEKD 3AE2D 3AE7D 3AEED 3AE1D 2ACZC 3AEBC 2WU2D 2WU5D 3VR8D 4YSYC 4YTND 1YQ4D 1YQ3D 3AEDD 2WDRD 3AE5C 3VRAD 3AE3D 3P4RD 1KF6C 3AE4D 3ABVD 4YTPD 3SFEC 3VR9D 1L0VC 3P4PD 2H89C 4KX6C 5C3JC 2WP9C 4YXDC 2WS3C 3SFDD 2WDVC 3P4SC 1ZOYC 3AE9C 3AEAC 3VRBD 1QLBC 3AEGC 3AECC 1KFYD
chains in the Genus database with same CATH superfamily
1NEND 1ZP0D 2WQYC 4YSZD 3AEEC 4YTNC 4YSXC 2B76C 3AE6D 4LDTA 3AE8D 3CIRC 2ACZD 3VRAC 1E7PC 3AEBD 3P4QD 2H88C 3AE4C 4YSYD 4YTMC 2WDQC 3VR9C 4FJVA 3AE5D 3AEFC 2BS4C 3AE2C 1NEKC 1L0VD 3AE7C 2H89D 4KX6D 5C3JD 5C2TC 2FBWD 2WP9D 4YXDD 3AE1C 4YT0D 2WDVD 1KFYC 2WU2C 2WU5C 3VR8C 3P4SD 1YQ4C 1YQ3C 1ZOYD 3AEDC 3AEAD 2WDRC 3AE3C 3AEGD 3AECD 2BS3C 3P4RC 4YTMD 5C2TD 3ABVC 4YTPC 2WQYD 3AE6C 3AE8C 3P4PC 3P4QC 1KF6D 4DHZA 4YSXD 2B76D 3SFED 3CIRD 3SFDC 2H88D 3VRBC 2WDQD 2WS3D 4DHJA 3AEFD 1NENC 1ZP0C 3AE9D 2FBWC 4YSZC 2BS2C 4YT0C 1NEKD 3AE2D 4I6LA 3AE7D 4DHIB 3AEED 3AE1D 4DDIA 2ACZC 3AEBC 2WU2D 2WU5D 3VR8D 4YSYC 4YTND 1YQ4D 1YQ3D 3AEDD 2WDRD 3AE5C 3VRAD 3AE3D 4DDGA 2ZFYA 3P4RD 1KF6C 3AE4D 3ABVD 4YTPD 3SFEC 3VR9D 1L0VC 3P4PD 2H89C 4KX6C 5C3JC 2WP9C 4YXDC 2WS3C 3SFDD 1TFFA 2WDVC 3P4SC 1ZOYC 3AE9C 3AEAC 3VRBD 1QLBC 3AEGC 3AECC 1KFYD 3VONA
chains in the Genus database with same CATH topology
1NEND 1ZP0D 2WQYC 4YSZD 3AEEC 4YTNC 4YSXC 2B76C 3AE6D 3AE8D 3CIRC 2ACZD 3VRAC 1E7PC 3AEBD 3P4QD 2H88C 3AE4C 4YSYD 4YTMC 2WDQC 3VR9C 3AE5D 3AEFC 2BS4C 3AE2C 1NEKC 1L0VD 3AE7C 2H89D 4KX6D 5C3JD 5C2TC 2FBWD 2WP9D 4YXDD 3AE1C 4YT0D 2WDVD 1KFYC 2WU2C 2WU5C 3VR8C 3P4SD 1YQ4C 1YQ3C 1ZOYD 3AEDC 3AEAD 2WDRC 3AE3C 3AEGD 3AECD 2BS3C 3P4RC 4YTMD 5C2TD 3ABVC 4YTPC 2WQYD 3AE6C 3AE8C 3P4PC 3P4QC 1KF6D 4YSXD 2B76D 3SFED 3CIRD 3SFDC 2H88D 3VRBC 2WDQD 2WS3D 3AEFD 1NENC 1ZP0C 3AE9D 2FBWC 4YSZC 2BS2C 4YT0C 1NEKD 3AE2D 3AE7D 3AEED 3AE1D 2ACZC 3AEBC 2WU2D 2WU5D 3VR8D 4YSYC 4YTND 1YQ4D 1YQ3D 3AEDD 2WDRD 3AE5C 3VRAD 3AE3D 3P4RD 1KF6C 3AE4D 3ABVD 4YTPD 3SFEC 3VR9D 1L0VC 3P4PD 2H89C 4KX6C 5C3JC 2WP9C 4YXDC 2WS3C 3SFDD 2WDVC 3P4SC 1ZOYC 3AE9C 3AEAC 3VRBD 1QLBC 3AEGC 3AECC 1KFYD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NEN D;  1ZP0 D;  2WQY C;  4YSZ D;  3AEE C;  4YTN C;  4YSX C;  2B76 C;  3AE6 D;  3AE8 D;  3CIR C;  2ACZ D;  3VRA C;  1E7P C;  3AEB D;  3P4Q D;  2H88 C;  3AE4 C;  4YSY D;  4YTM C;  2WDQ C;  3VR9 C;  3AE5 D;  3AEF C;  2BS4 C;  3AE2 C;  1NEK C;  1L0V D;  3AE7 C;  2H89 D;  4KX6 D;  5C3J D;  5C2T C;  2FBW D;  2WP9 D;  4YXD D;  3AE1 C;  4YT0 D;  2WDV D;  1KFY C;  2WU2 C;  2WU5 C;  3VR8 C;  3P4S D;  1YQ4 C;  1YQ3 C;  1ZOY D;  3AED C;  3AEA D;  2WDR C;  3AE3 C;  3AEG D;  3AEC D;  2BS3 C;  3P4R C;  4YTM D;  5C2T D;  3ABV C;  4YTP C;  2WQY D;  3AE6 C;  3AE8 C;  3P4P C;  3P4Q C;  1KF6 D;  4YSX D;  2B76 D;  3SFE D;  3CIR D;  3SFD C;  2H88 D;  3VRB C;  2WDQ D;  2WS3 D;  3AEF D;  1NEN C;  1ZP0 C;  3AE9 D;  2FBW C;  4YSZ C;  2BS2 C;  4YT0 C;  1NEK D;  3AE2 D;  3AE7 D;  3AEE D;  3AE1 D;  2ACZ C;  3AEB C;  2WU2 D;  2WU5 D;  3VR8 D;  4YSY C;  4YTN D;  1YQ4 D;  1YQ3 D;  3AED D;  2WDR D;  3AE5 C;  3VRA D;  3AE3 D;  3P4R D;  1KF6 C;  3AE4 D;  3ABV D;  4YTP D;  3SFE C;  3VR9 D;  1L0V C;  3P4P D;  2H89 C;  4KX6 C;  5C3J C;  2WP9 C;  4YXD C;  2WS3 C;  3SFD D;  2WDV C;  3P4S C;  1ZOY C;  3AE9 C;  3AEA C;  3VRB D;  1QLB C;  3AEG C;  3AEC C;  1KFY D; 
#chains in the Genus database with same CATH topology
 1NEN D;  1ZP0 D;  2WQY C;  4YSZ D;  3AEE C;  4YTN C;  4YSX C;  2B76 C;  3AE6 D;  4LDT A;  3AE8 D;  3CIR C;  2ACZ D;  3VRA C;  1E7P C;  3AEB D;  3P4Q D;  2H88 C;  3AE4 C;  4YSY D;  4YTM C;  2WDQ C;  3VR9 C;  4FJV A;  3AE5 D;  3AEF C;  2BS4 C;  3AE2 C;  1NEK C;  1L0V D;  3AE7 C;  2H89 D;  4KX6 D;  5C3J D;  5C2T C;  2FBW D;  2WP9 D;  4YXD D;  3AE1 C;  4YT0 D;  2WDV D;  1KFY C;  2WU2 C;  2WU5 C;  3VR8 C;  3P4S D;  1YQ4 C;  1YQ3 C;  1ZOY D;  3AED C;  3AEA D;  2WDR C;  3AE3 C;  3AEG D;  3AEC D;  2BS3 C;  3P4R C;  4YTM D;  5C2T D;  3ABV C;  4YTP C;  2WQY D;  3AE6 C;  3AE8 C;  3P4P C;  3P4Q C;  1KF6 D;  4DHZ A;  4YSX D;  2B76 D;  3SFE D;  3CIR D;  3SFD C;  2H88 D;  3VRB C;  2WDQ D;  2WS3 D;  4DHJ A;  3AEF D;  1NEN C;  1ZP0 C;  3AE9 D;  2FBW C;  4YSZ C;  2BS2 C;  4YT0 C;  1NEK D;  3AE2 D;  4I6L A;  3AE7 D;  4DHI B;  3AEE D;  3AE1 D;  4DDI A;  2ACZ C;  3AEB C;  2WU2 D;  2WU5 D;  3VR8 D;  4YSY C;  4YTN D;  1YQ4 D;  1YQ3 D;  3AED D;  2WDR D;  3AE5 C;  3VRA D;  3AE3 D;  4DDG A;  2ZFY A;  3P4R D;  1KF6 C;  3AE4 D;  3ABV D;  4YTP D;  3SFE C;  3VR9 D;  1L0V C;  3P4P D;  2H89 C;  4KX6 C;  5C3J C;  2WP9 C;  4YXD C;  2WS3 C;  3SFD D;  1TFF A;  2WDV C;  3P4S C;  1ZOY C;  3AE9 C;  3AEA C;  3VRB D;  1QLB C;  3AEG C;  3AEC C;  1KFY D;  3VON A; 
#chains in the Genus database with same CATH homology
 1NEN D;  1ZP0 D;  2WQY C;  4YSZ D;  3AEE C;  4YTN C;  4YSX C;  2B76 C;  3AE6 D;  3AE8 D;  3CIR C;  2ACZ D;  3VRA C;  1E7P C;  3AEB D;  3P4Q D;  2H88 C;  3AE4 C;  4YSY D;  4YTM C;  2WDQ C;  3VR9 C;  3AE5 D;  3AEF C;  2BS4 C;  3AE2 C;  1NEK C;  1L0V D;  3AE7 C;  2H89 D;  4KX6 D;  5C3J D;  5C2T C;  2FBW D;  2WP9 D;  4YXD D;  3AE1 C;  4YT0 D;  2WDV D;  1KFY C;  2WU2 C;  2WU5 C;  3VR8 C;  3P4S D;  1YQ4 C;  1YQ3 C;  1ZOY D;  3AED C;  3AEA D;  2WDR C;  3AE3 C;  3AEG D;  3AEC D;  2BS3 C;  3P4R C;  4YTM D;  5C2T D;  3ABV C;  4YTP C;  2WQY D;  3AE6 C;  3AE8 C;  3P4P C;  3P4Q C;  1KF6 D;  4YSX D;  2B76 D;  3SFE D;  3CIR D;  3SFD C;  2H88 D;  3VRB C;  2WDQ D;  2WS3 D;  3AEF D;  1NEN C;  1ZP0 C;  3AE9 D;  2FBW C;  4YSZ C;  2BS2 C;  4YT0 C;  1NEK D;  3AE2 D;  3AE7 D;  3AEE D;  3AE1 D;  2ACZ C;  3AEB C;  2WU2 D;  2WU5 D;  3VR8 D;  4YSY C;  4YTN D;  1YQ4 D;  1YQ3 D;  3AED D;  2WDR D;  3AE5 C;  3VRA D;  3AE3 D;  3P4R D;  1KF6 C;  3AE4 D;  3ABV D;  4YTP D;  3SFE C;  3VR9 D;  1L0V C;  3P4P D;  2H89 C;  4KX6 C;  5C3J C;  2WP9 C;  4YXD C;  2WS3 C;  3SFD D;  2WDV C;  3P4S C;  1ZOY C;  3AE9 C;  3AEA C;  3VRB D;  1QLB C;  3AEG C;  3AEC C;  1KFY D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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