2WQGA

Sap domain from tho1: l31w (fluorophore) mutant
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
51
Chain Sequence
GSADYSSLTVVQLKDLLTKRNLSVGGLKNEWVQRLIKDDEESKGESEVSPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Engineering a Two-Helix Bundle Protein for Folding Studies.
pubmed doi rcsb
molecule tags Unknown function
source organism Saccharomyces cerevisiae
molecule keywords PROTEIN THO1
total genus 12
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2009-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02037 SAP SAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 2wqgA00
2RNNA 2WQGA 2KVEA 2KVUA 1ZBHA 4UZWA 1JJRA 2JVWA 2RNOA 1JEQA 1V66A 2KVDA 2KW9A 4BITA 1H1JS
chains in the Genus database with same CATH superfamily
2KFVA 2RNNA 1EN7A 2WQGA 4BITA 2RNOA 2DK4A 2HJQA 2A8VA 1A63A 2KVEA 1E7DA 1KHCA 2ODCI 2W51A 4UZWA 1GKUB 2MPHA 2KVDA 3L0OA 2QNCA 1Y02A 2ODGC 3FLGA 1GJJA 3QKJA 1GL9B 1JJRA 2LC3A 5CIUA 2QNFA 1JEQA 1V66A 1H9EA 1H1JS 1A62A 2G80A 3LLRA 1JEIA 2KVUA 1ZBHA 1H9FA 2JVWA 2LD7A 1E7LA 2KW9A 1A8VA 1YNSA 1ZS9A
chains in the Genus database with same CATH topology
2RNNA 2WQGA 2KVEA 2KVUA 1ZBHA 4UZWA 1JJRA 2JVWA 2RNOA 1JEQA 1V66A 2KVDA 2KW9A 4BITA 1H1JS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RNN A;  2WQG A;  2KVE A;  2KVU A;  1ZBH A;  4UZW A;  1JJR A;  2JVW A;  2RNO A;  1JEQ A;  1V66 A;  2KVD A;  2KW9 A;  4BIT A;  1H1J S; 
#chains in the Genus database with same CATH topology
 2KFV A;  2RNN A;  1EN7 A;  2WQG A;  4BIT A;  2RNO A;  2DK4 A;  2HJQ A;  2A8V A;  1A63 A;  2KVE A;  1E7D A;  1KHC A;  2ODC I;  2W51 A;  4UZW A;  1GKU B;  2MPH A;  2KVD A;  3L0O A;  2QNC A;  1Y02 A;  2ODG C;  3FLG A;  1GJJ A;  3QKJ A;  1GL9 B;  1JJR A;  2LC3 A;  5CIU A;  2QNF A;  1JEQ A;  1V66 A;  1H9E A;  1H1J S;  1A62 A;  2G80 A;  3LLR A;  1JEI A;  2KVU A;  1ZBH A;  1H9F A;  2JVW A;  2LD7 A;  1E7L A;  2KW9 A;  1A8V A;  1YNS A;  1ZS9 A; 
#chains in the Genus database with same CATH homology
 2RNN A;  2WQG A;  2KVE A;  2KVU A;  1ZBH A;  4UZW A;  1JJR A;  2JVW A;  2RNO A;  1JEQ A;  1V66 A;  2KVD A;  2KW9 A;  4BIT A;  1H1J S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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