2WQGA

Sap domain from tho1: l31w (fluorophore) mutant
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
51
structure length
51
Chain Sequence
GSADYSSLTVVQLKDLLTKRNLSVGGLKNEWVQRLIKDDEESKGESEVSPQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords PROTEIN THO1
publication title Engineering a Two-Helix Bundle Protein for Folding Studies.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 12
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2009-08-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02037 SAP SAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.30 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 SAP domain 2wqgA00
1JEQA 4UZWA 2RNNA 1JJRA 2JVWA 2KW9A 2RNOA 2KVUA 2WQGA 1ZBHA 1V66A 4BITA 2KVDA 1H1JS 2KVEA
chains in the Genus database with same CATH superfamily
4UZWA 2RNNA 1KHCA 1JEIA 1ZS9A 2JVWA 1H9FA 2WQGA 1A62A 1V66A 1EN7A 2HJQA 3FLGA 2KVDA 5CIUA 2QNFA 1GKUB 1H1JS 1Y02A 2KFVA 1E7LA 1GL9B 2DK4A 4BITA 2KVEA 1A8VA 2MPHA 1JJRA 2LD7A 2G80A 3L0OA 1YNSA 2LC3A 1E7DA 2A8VA 3LLRA 1A63A 2W51A 2ODGC 1H9EA 2QNCA 2KW9A 2ODCI 2RNOA 1ZBHA 2KVUA 3QKJA 1GJJA 1JEQA
chains in the Genus database with same CATH topology
1JEQA 4UZWA 2RNNA 1JJRA 2JVWA 2KW9A 2RNOA 2KVUA 2WQGA 1ZBHA 1V66A 4BITA 2KVDA 1H1JS 2KVEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JEQ A;  4UZW A;  2RNN A;  1JJR A;  2JVW A;  2KW9 A;  2RNO A;  2KVU A;  2WQG A;  1ZBH A;  1V66 A;  4BIT A;  2KVD A;  1H1J S;  2KVE A; 
#chains in the Genus database with same CATH topology
 4UZW A;  2RNN A;  1KHC A;  1JEI A;  1ZS9 A;  2JVW A;  1H9F A;  2WQG A;  1A62 A;  1V66 A;  1EN7 A;  2HJQ A;  3FLG A;  2KVD A;  5CIU A;  2QNF A;  1GKU B;  1H1J S;  1Y02 A;  2KFV A;  1E7L A;  1GL9 B;  2DK4 A;  4BIT A;  2KVE A;  1A8V A;  2MPH A;  1JJR A;  2LD7 A;  2G80 A;  3L0O A;  1YNS A;  2LC3 A;  1E7D A;  2A8V A;  3LLR A;  1A63 A;  2W51 A;  2ODG C;  1H9E A;  2QNC A;  2KW9 A;  2ODC I;  2RNO A;  1ZBH A;  2KVU A;  3QKJ A;  1GJJ A;  1JEQ A; 
#chains in the Genus database with same CATH homology
 1JEQ A;  4UZW A;  2RNN A;  1JJR A;  2JVW A;  2KW9 A;  2RNO A;  2KVU A;  2WQG A;  1ZBH A;  1V66 A;  4BIT A;  2KVD A;  1H1J S;  2KVE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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