2WU2C

Crystal structure of the e. coli succinate:quinone oxidoreductase (sqr) sdhc his84met mutant
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
122
structure length
122
Chain Sequence
QRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYMVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the E. Coli Succinate:Quinone Oxidoreductase (Sqr) Sdhc His84met Mutant
rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT
total genus 52
structure length 122
sequence length 122
chains with identical sequence G, K
ec nomenclature
pdb deposition date 2009-09-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 2wu2C00
1YQ4C 3CIRC 4YXDD 1YQ4D 3CIRD 2B76C 2WS3D 3VR8C 2B76D 5C3JC 3AE6C 3VRAC 3VR8D 3AE2C 5C3JD 3VR9C 3AE6D 4YT0C 3VRAD 3P4PC 3VR9D 3AE2D 3AECC 3AEEC 3SFEC 3P4PD 3AECD 2WDQC 3AEED 3AEDC 5C2TC 3P4QC 3AEDD 5C2TD 3P4QD 2WU5C 1KFYC 4KX6C 4YTMC 2WU5D 3P4RC 2H88C 1KFYD 4YSXC 1QLBC 4KX6D 4YTMD 3P4RD 2H88D 4YSXD 4YT0D 2WU2C 3AEFC 2WU2D 3SFED 3AEFD 2WDQD 3SFDC 2BS3C 1ZOYC 3AE8C 3SFDD 4YTPC 2WDVC 3AE5C 1ZOYD 2ACZC 3AE8D 1ZP0C 4YTPD 2WDVD 3AE5D 2WDRC 1YQ3C 2ACZD 3AE3C 1ZP0D 3AEGC 2WDRD 1YQ3D 3AEGD 1E7PC 1L0VC 3AE7C 2H89C 1KF6C 3AEAC 2WP9C 1L0VD 3AE7D 2H89D 3AEBC 1KF6D 2BS2C 2WS3C 4YSZC 3AEAD 2WP9D 3P4SC 3AEBD 4YSYC 4YSZD 2FBWC 3ABVC 2BS4C 2WQYC 3P4SD 3AE4C 4YSYD 2FBWD 3VRBC 3ABVD 2WQYD 1NEKC 3AE4D 3VRBD 4YTNC 1NEKD 4YTND 1NENC 3AE1C 3AE3D 3AE9C 1NEND 3AE1D 3AE9D 4YXDC
chains in the Genus database with same CATH superfamily
1YQ4C 3CIRC 4DHJA 4YXDD 1YQ4D 3CIRD 2B76C 2WS3D 3VR8C 2B76D 5C3JC 3AE6C 4DDGA 3VRAC 3VR8D 3AE2C 5C3JD 3VR9C 3AE6D 4YT0C 3VRAD 3P4PC 3VR9D 3AE2D 3AECC 3AEEC 3SFEC 3P4PD 3AECD 2WDQC 3AEED 3AEDC 5C2TC 4DHIB 4LDTA 3P4QC 3AEDD 5C2TD 3P4QD 2WU5C 1KFYC 2ZFYA 4KX6C 4YTMC 2WU5D 3P4RC 2H88C 1KFYD 4YSXC 4DHZA 1QLBC 4KX6D 4YTMD 3P4RD 2H88D 4YSXD 4I6LA 4YT0D 2WU2C 3AEFC 2WU2D 3SFED 3AEFD 2WDQD 3SFDC 4DDIA 2BS3C 1ZOYC 3AE8C 3SFDD 4YTPC 2WDVC 3AE5C 1ZOYD 2ACZC 3AE8D 1ZP0C 4FJVA 2WDVD 4YTPD 3AE5D 2WDRC 1YQ3C 2ACZD 3AE3C 1ZP0D 3AEGC 2WDRD 1YQ3D 3AEGD 1E7PC 1L0VC 3AE7C 2H89C 1KF6C 3AEAC 2WP9C 1L0VD 3AE7D 2H89D 3AEBC 1KF6D 2BS2C 2WS3C 4YSZC 3AEAD 2WP9D 3P4SC 3AEBD 4YSYC 4YSZD 2FBWC 3ABVC 2BS4C 2WQYC 3P4SD 3AE4C 4YSYD 2FBWD 3VRBC 3ABVD 2WQYD 1NEKC 3AE4D 3VRBD 4YTNC 1TFFA 1NEKD 4YTND 1NENC 3AE1C 3AE3D 3VONA 3AE9C 1NEND 3AE1D 3AE9D 4YXDC
chains in the Genus database with same CATH topology
1YQ4C 3CIRC 4YXDD 1YQ4D 3CIRD 2B76C 2WS3D 3VR8C 2B76D 5C3JC 3AE6C 3VRAC 3VR8D 3AE2C 5C3JD 3VR9C 3AE6D 4YT0C 3VRAD 3P4PC 3VR9D 3AE2D 3AECC 3AEEC 3SFEC 3P4PD 3AECD 2WDQC 3AEED 3AEDC 5C2TC 3P4QC 3AEDD 5C2TD 3P4QD 2WU5C 1KFYC 4KX6C 4YTMC 2WU5D 3P4RC 2H88C 1KFYD 4YSXC 1QLBC 4KX6D 4YTMD 3P4RD 2H88D 4YSXD 4YT0D 2WU2C 3AEFC 2WU2D 3SFED 3AEFD 2WDQD 3SFDC 2BS3C 1ZOYC 3AE8C 3SFDD 4YTPC 2WDVC 3AE5C 1ZOYD 2ACZC 3AE8D 1ZP0C 4YTPD 2WDVD 3AE5D 2WDRC 1YQ3C 2ACZD 3AE3C 1ZP0D 3AEGC 2WDRD 1YQ3D 3AEGD 1E7PC 1L0VC 3AE7C 2H89C 1KF6C 3AEAC 2WP9C 1L0VD 3AE7D 2H89D 3AEBC 1KF6D 2BS2C 2WS3C 4YSZC 3AEAD 2WP9D 3P4SC 3AEBD 4YSYC 4YSZD 2FBWC 3ABVC 2BS4C 2WQYC 3P4SD 3AE4C 4YSYD 2FBWD 3VRBC 3ABVD 2WQYD 1NEKC 3AE4D 3VRBD 4YTNC 1NEKD 4YTND 1NENC 3AE1C 3AE3D 3AE9C 1NEND 3AE1D 3AE9D 4YXDC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQ4 C;  3CIR C;  4YXD D;  1YQ4 D;  3CIR D;  2B76 C;  2WS3 D;  3VR8 C;  2B76 D;  5C3J C;  3AE6 C;  3VRA C;  3VR8 D;  3AE2 C;  5C3J D;  3VR9 C;  3AE6 D;  4YT0 C;  3VRA D;  3P4P C;  3VR9 D;  3AE2 D;  3AEC C;  3AEE C;  3SFE C;  3P4P D;  3AEC D;  2WDQ C;  3AEE D;  3AED C;  5C2T C;  3P4Q C;  3AED D;  5C2T D;  3P4Q D;  2WU5 C;  1KFY C;  4KX6 C;  4YTM C;  2WU5 D;  3P4R C;  2H88 C;  1KFY D;  4YSX C;  1QLB C;  4KX6 D;  4YTM D;  3P4R D;  2H88 D;  4YSX D;  4YT0 D;  2WU2 C;  3AEF C;  2WU2 D;  3SFE D;  3AEF D;  2WDQ D;  3SFD C;  2BS3 C;  1ZOY C;  3AE8 C;  3SFD D;  4YTP C;  2WDV C;  3AE5 C;  1ZOY D;  2ACZ C;  3AE8 D;  1ZP0 C;  4YTP D;  2WDV D;  3AE5 D;  2WDR C;  1YQ3 C;  2ACZ D;  3AE3 C;  1ZP0 D;  3AEG C;  2WDR D;  1YQ3 D;  3AEG D;  1E7P C;  1L0V C;  3AE7 C;  2H89 C;  1KF6 C;  3AEA C;  2WP9 C;  1L0V D;  3AE7 D;  2H89 D;  3AEB C;  1KF6 D;  2BS2 C;  2WS3 C;  4YSZ C;  3AEA D;  2WP9 D;  3P4S C;  3AEB D;  4YSY C;  4YSZ D;  2FBW C;  3ABV C;  2BS4 C;  2WQY C;  3P4S D;  3AE4 C;  4YSY D;  2FBW D;  3VRB C;  3ABV D;  2WQY D;  1NEK C;  3AE4 D;  3VRB D;  4YTN C;  1NEK D;  4YTN D;  1NEN C;  3AE1 C;  3AE3 D;  3AE9 C;  1NEN D;  3AE1 D;  3AE9 D;  4YXD C; 
#chains in the Genus database with same CATH topology
 1YQ4 C;  3CIR C;  4DHJ A;  4YXD D;  1YQ4 D;  3CIR D;  2B76 C;  2WS3 D;  3VR8 C;  2B76 D;  5C3J C;  3AE6 C;  4DDG A;  3VRA C;  3VR8 D;  3AE2 C;  5C3J D;  3VR9 C;  3AE6 D;  4YT0 C;  3VRA D;  3P4P C;  3VR9 D;  3AE2 D;  3AEC C;  3AEE C;  3SFE C;  3P4P D;  3AEC D;  2WDQ C;  3AEE D;  3AED C;  5C2T C;  4DHI B;  4LDT A;  3P4Q C;  3AED D;  5C2T D;  3P4Q D;  2WU5 C;  1KFY C;  2ZFY A;  4KX6 C;  4YTM C;  2WU5 D;  3P4R C;  2H88 C;  1KFY D;  4YSX C;  4DHZ A;  1QLB C;  4KX6 D;  4YTM D;  3P4R D;  2H88 D;  4YSX D;  4I6L A;  4YT0 D;  2WU2 C;  3AEF C;  2WU2 D;  3SFE D;  3AEF D;  2WDQ D;  3SFD C;  4DDI A;  2BS3 C;  1ZOY C;  3AE8 C;  3SFD D;  4YTP C;  2WDV C;  3AE5 C;  1ZOY D;  2ACZ C;  3AE8 D;  1ZP0 C;  4FJV A;  2WDV D;  4YTP D;  3AE5 D;  2WDR C;  1YQ3 C;  2ACZ D;  3AE3 C;  1ZP0 D;  3AEG C;  2WDR D;  1YQ3 D;  3AEG D;  1E7P C;  1L0V C;  3AE7 C;  2H89 C;  1KF6 C;  3AEA C;  2WP9 C;  1L0V D;  3AE7 D;  2H89 D;  3AEB C;  1KF6 D;  2BS2 C;  2WS3 C;  4YSZ C;  3AEA D;  2WP9 D;  3P4S C;  3AEB D;  4YSY C;  4YSZ D;  2FBW C;  3ABV C;  2BS4 C;  2WQY C;  3P4S D;  3AE4 C;  4YSY D;  2FBW D;  3VRB C;  3ABV D;  2WQY D;  1NEK C;  3AE4 D;  3VRB D;  4YTN C;  1TFF A;  1NEK D;  4YTN D;  1NEN C;  3AE1 C;  3AE3 D;  3VON A;  3AE9 C;  1NEN D;  3AE1 D;  3AE9 D;  4YXD C; 
#chains in the Genus database with same CATH homology
 1YQ4 C;  3CIR C;  4YXD D;  1YQ4 D;  3CIR D;  2B76 C;  2WS3 D;  3VR8 C;  2B76 D;  5C3J C;  3AE6 C;  3VRA C;  3VR8 D;  3AE2 C;  5C3J D;  3VR9 C;  3AE6 D;  4YT0 C;  3VRA D;  3P4P C;  3VR9 D;  3AE2 D;  3AEC C;  3AEE C;  3SFE C;  3P4P D;  3AEC D;  2WDQ C;  3AEE D;  3AED C;  5C2T C;  3P4Q C;  3AED D;  5C2T D;  3P4Q D;  2WU5 C;  1KFY C;  4KX6 C;  4YTM C;  2WU5 D;  3P4R C;  2H88 C;  1KFY D;  4YSX C;  1QLB C;  4KX6 D;  4YTM D;  3P4R D;  2H88 D;  4YSX D;  4YT0 D;  2WU2 C;  3AEF C;  2WU2 D;  3SFE D;  3AEF D;  2WDQ D;  3SFD C;  2BS3 C;  1ZOY C;  3AE8 C;  3SFD D;  4YTP C;  2WDV C;  3AE5 C;  1ZOY D;  2ACZ C;  3AE8 D;  1ZP0 C;  4YTP D;  2WDV D;  3AE5 D;  2WDR C;  1YQ3 C;  2ACZ D;  3AE3 C;  1ZP0 D;  3AEG C;  2WDR D;  1YQ3 D;  3AEG D;  1E7P C;  1L0V C;  3AE7 C;  2H89 C;  1KF6 C;  3AEA C;  2WP9 C;  1L0V D;  3AE7 D;  2H89 D;  3AEB C;  1KF6 D;  2BS2 C;  2WS3 C;  4YSZ C;  3AEA D;  2WP9 D;  3P4S C;  3AEB D;  4YSY C;  4YSZ D;  2FBW C;  3ABV C;  2BS4 C;  2WQY C;  3P4S D;  3AE4 C;  4YSY D;  2FBW D;  3VRB C;  3ABV D;  2WQY D;  1NEK C;  3AE4 D;  3VRB D;  4YTN C;  1NEK D;  4YTN D;  1NEN C;  3AE1 C;  3AE3 D;  3AE9 C;  1NEN D;  3AE1 D;  3AE9 D;  4YXD C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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