The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
115
|
sequence length |
342
|
structure length |
298
|
Chain Sequence |
TEGLSDKEQRFVDKLYTGLIQGQRACLAEAITLVESTHSRKKELAQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPTELSRDMNAYIRPSTRTTNEAILLCEGAGYDIILIETVGVSEFAVADMVDMFVLLLPPAIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRWKPKVIRISARSGEGISEMWDKMKDFQDLMLASGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKVLIGALSPGLAADFLLKAFKS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structures of the Human Gtpase Mmaa and Vitamin B12-Dependent Methylmalonyl-Coa Mutase and Insight Into Their Complex Formation.
pubmed doi rcsb |
molecule tags |
Transport protein
|
source organism |
Homo sapiens
|
molecule keywords |
METHYLMALONIC ACIDURIA TYPE A PROTEIN, MITOCHONDRIAL
|
total genus |
115
|
structure length |
298
|
sequence length |
342
|
chains with identical sequence |
B, C, D
|
ec nomenclature | |
pdb deposition date | 2009-10-30 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF03308 | MeaB | Methylmalonyl Co-A mutase-associated GTPase MeaB |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix Hairpins | ||
Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | ||
Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |