2WYCA

The quorum quenching n-acyl homoserine lactone acylase pvdq in complex with 3-oxo-lauric acid
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA
publication title The Quorum-Quenching N-Acyl Homoserine Lactone Acylase Pvdq is an Ntn-Hydrolase with an Unusual Substrate-Binding Pocket
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2009-11-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 2wycA00
1GK0A 2WYEA 4YFBA 1AJPA 1KECA 3SRBA 1AI5A 3K3WA 4WKVA 2WYDA 4E55A 4HSTA 4E57A 1GHDA 1JX9A 2AE4A 1PNMA 1GK1A 1FXHA 1JW0A 1OR0A 2ADVA 2WYBA 3SRAA 1KEHA 1CP9A 4WKUA 1GK9A 1AJNA 3L91A 1K7DA 4YFAA 1AI6A 4M1JA 1H2GA 1K5SA 4E56A 4K2FA 4WKTA 1E3AA 1AI4A 3S8RA 1GKFA 1AI7A 1JVZA 2AE3A 2AE5A 1FXVA 1PNKA 4PELA 4WKSA 3SRCA 4BTHA 1GM8A 3L94A 3JTQA 1AJQA 3JTRA 1GM7A 1FM2A 4HSRA 2WYCA 4PEMA 1K5QA 3ML0A 4K2GA 1GM9A 4YF9A 1PNLA
chains in the Genus database with same CATH superfamily
1GK0A 2WYEA 4YFBA 1AJPA 1KECA 3SRBA 1AI5A 3K3WA 4WKVA 2WYDA 4E55A 4HSTA 4E57A 1GHDA 1JX9A 2AE4A 1PNMA 1GK1A 1FXHA 1JW0A 1OR0A 2ADVA 2WYBA 3SRAA 1KEHA 1CP9A 4WKUA 1GK9A 1AJNA 3L91A 1K7DA 4YFAA 1AI6A 4M1JA 1H2GA 1K5SA 4E56A 4K2FA 4WKTA 1E3AA 1AI4A 3FGRA 3S8RA 1GKFA 1AI7A 1JVZA 2AE3A 2AE5A 1FXVA 1PNKA 3FGTA 4PELA 4WKSA 3SRCA 1GM8A 4BTHA 4BWCA 3L94A 3JTQA 1AJQA 3JTRA 1GM7A 1FM2A 4HSRA 2WYCA 4PEMA 1K5QA 3ML0A 4K2GA 1GM9A 4YF9A 1PNLA
chains in the Genus database with same CATH topology
1GK0A 2WYEA 4YFBA 1AJPA 1KECA 3SRBA 1AI5A 3K3WA 4WKVA 2WYDA 4E55A 4HSTA 4E57A 1GHDA 1JX9A 2AE4A 1PNMA 1GK1A 1FXHA 1JW0A 1OR0A 2ADVA 2WYBA 3SRAA 1KEHA 1CP9A 4WKUA 1GK9A 1AJNA 3L91A 1K7DA 4YFAA 1AI6A 4M1JA 1H2GA 1K5SA 4E56A 4K2FA 4WKTA 1E3AA 1AI4A 3S8RA 1GKFA 1AI7A 1JVZA 2AE3A 2AE5A 1FXVA 1PNKA 4PELA 4WKSA 3SRCA 4BTHA 1GM8A 3L94A 3JTQA 1AJQA 3JTRA 1GM7A 1FM2A 4HSRA 2WYCA 4PEMA 1K5QA 3ML0A 4K2GA 1GM9A 4YF9A 1PNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GK0 A;  2WYE A;  4YFB A;  1AJP A;  1KEC A;  3SRB A;  1AI5 A;  3K3W A;  4WKV A;  2WYD A;  4E55 A;  4HST A;  4E57 A;  1GHD A;  1JX9 A;  2AE4 A;  1PNM A;  1GK1 A;  1FXH A;  1JW0 A;  1OR0 A;  2ADV A;  2WYB A;  3SRA A;  1KEH A;  1CP9 A;  4WKU A;  1GK9 A;  1AJN A;  3L91 A;  1K7D A;  4YFA A;  1AI6 A;  4M1J A;  1H2G A;  1K5S A;  4E56 A;  4K2F A;  4WKT A;  1E3A A;  1AI4 A;  3S8R A;  1GKF A;  1AI7 A;  1JVZ A;  2AE3 A;  2AE5 A;  1FXV A;  1PNK A;  4PEL A;  4WKS A;  3SRC A;  4BTH A;  1GM8 A;  3L94 A;  3JTQ A;  1AJQ A;  3JTR A;  1GM7 A;  1FM2 A;  4HSR A;  2WYC A;  4PEM A;  1K5Q A;  3ML0 A;  4K2G A;  1GM9 A;  4YF9 A;  1PNL A; 
#chains in the Genus database with same CATH topology
 1GK0 A;  2WYE A;  4YFB A;  1AJP A;  1KEC A;  3SRB A;  1AI5 A;  3K3W A;  4WKV A;  2WYD A;  4E55 A;  4HST A;  4E57 A;  1GHD A;  1JX9 A;  2AE4 A;  1PNM A;  1GK1 A;  1FXH A;  1JW0 A;  1OR0 A;  2ADV A;  2WYB A;  3SRA A;  1KEH A;  1CP9 A;  4WKU A;  1GK9 A;  1AJN A;  3L91 A;  1K7D A;  4YFA A;  1AI6 A;  4M1J A;  1H2G A;  1K5S A;  4E56 A;  4K2F A;  4WKT A;  1E3A A;  1AI4 A;  3FGR A;  3S8R A;  1GKF A;  1AI7 A;  1JVZ A;  2AE3 A;  2AE5 A;  1FXV A;  1PNK A;  3FGT A;  4PEL A;  4WKS A;  3SRC A;  1GM8 A;  4BTH A;  4BWC A;  3L94 A;  3JTQ A;  1AJQ A;  3JTR A;  1GM7 A;  1FM2 A;  4HSR A;  2WYC A;  4PEM A;  1K5Q A;  3ML0 A;  4K2G A;  1GM9 A;  4YF9 A;  1PNL A; 
#chains in the Genus database with same CATH homology
 1GK0 A;  2WYE A;  4YFB A;  1AJP A;  1KEC A;  3SRB A;  1AI5 A;  3K3W A;  4WKV A;  2WYD A;  4E55 A;  4HST A;  4E57 A;  1GHD A;  1JX9 A;  2AE4 A;  1PNM A;  1GK1 A;  1FXH A;  1JW0 A;  1OR0 A;  2ADV A;  2WYB A;  3SRA A;  1KEH A;  1CP9 A;  4WKU A;  1GK9 A;  1AJN A;  3L91 A;  1K7D A;  4YFA A;  1AI6 A;  4M1J A;  1H2G A;  1K5S A;  4E56 A;  4K2F A;  4WKT A;  1E3A A;  1AI4 A;  3S8R A;  1GKF A;  1AI7 A;  1JVZ A;  2AE3 A;  2AE5 A;  1FXV A;  1PNK A;  4PEL A;  4WKS A;  3SRC A;  4BTH A;  1GM8 A;  3L94 A;  3JTQ A;  1AJQ A;  3JTR A;  1GM7 A;  1FM2 A;  4HSR A;  2WYC A;  4PEM A;  1K5Q A;  3ML0 A;  4K2G A;  1GM9 A;  4YF9 A;  1PNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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