The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
98
|
sequence length |
375
|
structure length |
375
|
Chain Sequence |
MLEANVYDNFNPNYYNISDFSMPNGKKEKRGLPIPKARCQVINYELWETGYLYTSSATLTVSVEVGDIVQILFPEVVPIEEALGKKKKLNLDMVYLVTDVDESNKATLKNYFWAMIESLDVPNAITKTTNFAIIDYLIDPNKNNLMSYGYFFNSSIFAGKATINRKAETSSAHDVAKRIFSKVQFQPTTTIQHAPSETDPRNLLFINFASRNWNRKRITTRVDIKQSVTMDTETIVERSAYNFAVVFVKNKATDDYTDPPKMYIAKNNGDVIDYSTYHGDGTDLPDVRTAKTLFYDRDDHGNPPELSTIKVEISPSTIVTRLIFNQNELLPLYVNDLVDIWYEGKLYSGYIADRVKTEFNDRLIFVESGDKPNVI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein
|
| molecule keywords |
PUTATIVE RECEPTOR BINDING PROTEIN
|
| publication title |
Structure of Lactococcal Phage P2 Baseplate and its Mechanism of Activation.
pubmed doi rcsb |
| source organism |
Lactococcus phage p2
|
| total genus |
98
|
| structure length |
375
|
| sequence length |
375
|
| ec nomenclature | |
| pdb deposition date | 2009-12-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| R | PF16792 | Caudo_bapla16 | Phage tail base-plate attachment protein of Caudovirales ORF16 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Phage tail proteins - horseshoe like beta roll fold | Phage tail proteins - horseshoe like beta roll fold | ||
| Alpha Beta | 2-Layer Sandwich | Phage tail proteins - 2 layer sandwich fold | Phage tail proteins - 2 layer sandwich fold | ||
| Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Phage tail protein beta-alpha-beta fold |
#chains in the Genus database with same CATH superfamily 2WZP R; 2X53 1; #chains in the Genus database with same CATH topology 1K28 D; 2W16 A; 3ADY A; 4G08 A; 4JTM A; 2M5J A; 2P5Z X; 4M0N A; 2W6T A; 2O5P A; 2W75 A; 4M0H A; 2W76 A; 2IAH A; 2Z6B D; 3GS9 A; 3D37 A; 2L4W A; 2W77 A; 3EZJ A; 3OV5 A; 4UHV A; 2D1U A; 2A02 A; 4MTK A; 2W78 A; 4AR0 A; 3CDD A; 1WTH D; 1ZZV A; 2W6U A; 2WZP R; 3GR5 A; 2X53 1; 1WRU A; #chains in the Genus database with same CATH homology 1K28 D; 2W16 A; 3ADY A; 4G08 A; 4JTM A; 2M5J A; 4M0N A; 2W6T A; 2O5P A; 2W75 A; 4M0H A; 2W76 A; 2IAH A; 2Z6B D; 3GS9 A; 2L4W A; 2W77 A; 3EZJ A; 3OV5 A; 4UHV A; 2D1U A; 2A02 A; 4MTK A; 2W78 A; 4AR0 A; 1WTH D; 1ZZV A; 2W6U A; 2WZP R; 3GR5 A; 2X53 1;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
