2X00D

Crystal structure of a-achbp in complex with gymnodimine a
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
212
structure length
212
Chain Sequence
DDDLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Structural Determinants in Phycotoxins and Achbp Conferring High Affinity Binding and Nicotinic Achr Antagonism.
pubmed doi rcsb
source organism Aplysia californica
total genus 54
structure length 212
sequence length 212
ec nomenclature
pdb deposition date 2009-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2x00D00
2VL0A 2Y58A 2BG9E 3ZKRA 5CFBA 2WNCA 2YOEA 3P4WA 4XK9A 3RIFA 3TLVA 4QH4A 4HFEA 4HFBA 4HFHA 5AFLA 5BRXA 5FJVA 4FRRA 4AFHA 4TNVA 2XQ7A 3UU3A 2WNJA 3JADA 4NPPA 4QACA 5HCJA 2Y7YA 3U8LA 3JAEA 5J5HA 5AINA 3UUBA 4COFA 3EAMA 3RQWA 3U8NA 3UU4A 4UXUA 1I9BA 2XQ6A 4Z90A 4ZJTA 4UM3A 5IUXA 3GUAA 2XYTA 2XYSA 3TLUA 3WTMA 4A97A 3WTOA 3UU8A 4ILBA 5LG3A 4LMKA 3EHZA 4HFDA 5LXBA 2Y56A 3ZDGA 3UQ4A 3UU5A 1UV6A 2XQ9A 2XQ4A 4A98A 5BW2A 3TLWA 4ZK4A 4UM3S 3TLSA 5HEOA 5AFMB 5JMEA 5AFHA 5CO5A 2XQAA 2BG9B 5HEJA 2X00A 2ZJVA 5AFNA 4IL4A 4HFIA 3RHWA 4AFGA 2PH9A 3PMZA 2XQ3A 3RI5A 3SIOA 4ZZCA 4Z91A 2W8GA 3WTHA 4QH1A 4TNWA 3WTNA 5HEGA 3T4MA 3JAFA 3TLTA 5TVCA 4EZ1A 5AFKA 4BQTA 4TWFA 4UY2A 2BG9C 5HEHA 3WTIA 3WTJA 1UW6A 3LSVA 4QABA 4ZJSA 4ILCA 2BJ0A 4ZK1A 3RQUA 2XNUA 5L4EA 1UX2A 5BP0A 3WIPA 5L47A 4UM3P 2Y54A 2YMDA 5L4HA 4ZZBA 2XZ6A 2XNVA 4XHEA 4QAAA 5HEUA 4LMJA 4WV9A 3C84A 3UU6A 2UZ6A 3SH1A 3ZDHA 2C9TA 2WZYA 3C79A 3SQ9A 5HCMA 4NZBA 3IGQA 4TWHA 4B5DA 2BYQA 3U8MA 2XQ5A 3WTLA 2X00D 2BYSA 2XQ8A 4IL9A 2BR7A 2XNTA 5KZUA 4LMLA 5AFMA 2YKSA 4D01A 4TWDA 5KE4A 4AFTA 2BG9A 2YN6A 2WNLA 4DBMA 2Y57A 4PIRA 5J5GA 3U8JA 4UM1A 3RIAA 4ZRUA 2BYRA 5AFJA 5J5FA 3EI0A 2ZJUA 3UQ7A 4ALXA 2BR8A 4IREA 3P50A 4ZR6A 4F8HA 2QC1B 3PEOA 3SQ6A 3WTKA 4QH5A 5SYOA 5J5IA 4HQPA 2BYNA 2WN9A 4BFQA 2BYPA 2YMEA 2XZ5A 2W8FA 4ILAA 3U8KA 5J0ZA 2PGZA 4X5TA 4HFCA
chains in the Genus database with same CATH superfamily
2VL0A 2Y58A 2BG9E 3ZKRA 5CFBA 2WNCA 2YOEA 3P4WA 4XK9A 3RIFA 3TLVA 4QH4A 4HFEA 4HFBA 4HFHA 5AFLA 5BRXA 5FJVA 4FRRA 4AFHA 4TNVA 2XQ7A 3UU3A 2WNJA 3JADA 4NPPA 4QACA 5HCJA 2Y7YA 3U8LA 3JAEA 5J5HA 5AINA 3UUBA 4COFA 3EAMA 3RQWA 3U8NA 3UU4A 4UXUA 1I9BA 2XQ6A 4Z90A 4ZJTA 4UM3A 5IUXA 3GUAA 2XYTA 2XYSA 3TLUA 3WTMA 4A97A 3WTOA 3UU8A 4ILBA 5LG3A 4LMKA 3EHZA 4HFDA 5LXBA 2Y56A 3ZDGA 3UQ4A 3UU5A 1UV6A 2XQ9A 2XQ4A 4A98A 5BW2A 3TLWA 4ZK4A 4UM3S 3TLSA 5HEOA 5AFMB 5JMEA 5AFHA 5CO5A 2XQAA 2BG9B 5HEJA 2X00A 2ZJVA 5AFNA 4IL4A 4HFIA 3RHWA 4AFGA 2PH9A 3PMZA 2XQ3A 3RI5A 3SIOA 4ZZCA 4Z91A 2W8GA 3WTHA 4QH1A 4TNWA 3WTNA 5HEGA 3T4MA 3JAFA 3TLTA 5TVCA 4EZ1A 5AFKA 4BQTA 4TWFA 4UY2A 2BG9C 5HEHA 3WTIA 3WTJA 1UW6A 3LSVA 4QABA 4ZJSA 4ILCA 2BJ0A 4ZK1A 3RQUA 2XNUA 5L4EA 1UX2A 5BP0A 3WIPA 5L47A 4UM3P 2Y54A 2YMDA 5L4HA 4ZZBA 2XZ6A 2XNVA 4XHEA 4QAAA 5HEUA 4LMJA 4WV9A 3C84A 3UU6A 2UZ6A 3SH1A 3ZDHA 2C9TA 2WZYA 3C79A 3SQ9A 5HCMA 4NZBA 3IGQA 4TWHA 4B5DA 2BYQA 3U8MA 2XQ5A 3WTLA 2X00D 2BYSA 2XQ8A 4IL9A 2BR7A 2XNTA 5KZUA 4LMLA 5AFMA 2YKSA 4D01A 4TWDA 5KE4A 4AFTA 2BG9A 2YN6A 2WNLA 4DBMA 2Y57A 4PIRA 5J5GA 3U8JA 4UM1A 3RIAA 4ZRUA 2BYRA 5AFJA 5J5FA 3EI0A 2ZJUA 3UQ7A 4ALXA 2BR8A 4IREA 3P50A 4ZR6A 4F8HA 2QC1B 3PEOA 3SQ6A 3WTKA 4QH5A 5SYOA 5J5IA 4HQPA 2BYNA 2WN9A 4BFQA 2BYPA 2YMEA 2XZ5A 2W8FA 4ILAA 3U8KA 5J0ZA 2PGZA 4X5TA 4HFCA
chains in the Genus database with same CATH topology
2VL0A 2Y58A 2BG9E 3ZKRA 5CFBA 2WNCA 2YOEA 3P4WA 4XK9A 3RIFA 3TLVA 4QH4A 4HFEA 4HFBA 4HFHA 5AFLA 5BRXA 5FJVA 4FRRA 4AFHA 4TNVA 2XQ7A 3UU3A 2WNJA 3JADA 4NPPA 4QACA 5HCJA 2Y7YA 3U8LA 3JAEA 5J5HA 5AINA 3UUBA 4COFA 3EAMA 3RQWA 3U8NA 3UU4A 4UXUA 1I9BA 2XQ6A 4Z90A 4ZJTA 4UM3A 5IUXA 3GUAA 2XYTA 2XYSA 3TLUA 3WTMA 4A97A 3WTOA 3UU8A 4ILBA 5LG3A 4LMKA 3EHZA 4HFDA 5LXBA 2Y56A 3ZDGA 3UQ4A 3UU5A 1UV6A 2XQ9A 2XQ4A 4A98A 5BW2A 3TLWA 4ZK4A 4UM3S 3TLSA 5HEOA 5AFMB 5JMEA 5AFHA 5CO5A 2XQAA 2BG9B 5HEJA 2X00A 2ZJVA 5AFNA 4IL4A 4HFIA 3RHWA 4AFGA 2PH9A 3PMZA 2XQ3A 3RI5A 3SIOA 4ZZCA 4Z91A 2W8GA 3WTHA 4QH1A 4TNWA 3WTNA 5HEGA 3T4MA 3JAFA 3TLTA 5TVCA 4EZ1A 5AFKA 4BQTA 4TWFA 4UY2A 2BG9C 5HEHA 3WTIA 3WTJA 1UW6A 3LSVA 4QABA 4ZJSA 4ILCA 2BJ0A 4ZK1A 3RQUA 2XNUA 5L4EA 1UX2A 5BP0A 3WIPA 5L47A 4UM3P 2Y54A 2YMDA 5L4HA 4ZZBA 2XZ6A 2XNVA 4XHEA 4QAAA 5HEUA 4LMJA 4WV9A 3C84A 3UU6A 2UZ6A 3SH1A 3ZDHA 2C9TA 2WZYA 3C79A 3SQ9A 5HCMA 4NZBA 3IGQA 4TWHA 4B5DA 2BYQA 3U8MA 2XQ5A 3WTLA 2X00D 2BYSA 2XQ8A 4IL9A 2BR7A 2XNTA 5KZUA 4LMLA 5AFMA 2YKSA 4D01A 4TWDA 5KE4A 4AFTA 2BG9A 2YN6A 2WNLA 4DBMA 2Y57A 4PIRA 5J5GA 3U8JA 4UM1A 3RIAA 4ZRUA 2BYRA 5AFJA 5J5FA 3EI0A 2ZJUA 3UQ7A 4ALXA 2BR8A 4IREA 3P50A 4ZR6A 4F8HA 2QC1B 3PEOA 3SQ6A 3WTKA 4QH5A 5SYOA 5J5IA 4HQPA 2BYNA 2WN9A 4BFQA 2BYPA 2YMEA 2XZ5A 2W8FA 4ILAA 3U8KA 5J0ZA 2PGZA 4X5TA 4HFCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VL0 A;  2Y58 A;  2BG9 E;  3ZKR A;  5CFB A;  2WNC A;  2YOE A;  3P4W A;  4XK9 A;  3RIF A;  3TLV A;  4QH4 A;  4HFE A;  4HFB A;  4HFH A;  5AFL A;  5BRX A;  5FJV A;  4FRR A;  4AFH A;  4TNV A;  2XQ7 A;  3UU3 A;  2WNJ A;  3JAD A;  4NPP A;  4QAC A;  5HCJ A;  2Y7Y A;  3U8L A;  3JAE A;  5J5H A;  5AIN A;  3UUB A;  4COF A;  3EAM A;  3RQW A;  3U8N A;  3UU4 A;  4UXU A;  1I9B A;  2XQ6 A;  4Z90 A;  4ZJT A;  4UM3 A;  5IUX A;  3GUA A;  2XYT A;  2XYS A;  3TLU A;  3WTM A;  4A97 A;  3WTO A;  3UU8 A;  4ILB A;  5LG3 A;  4LMK A;  3EHZ A;  4HFD A;  5LXB A;  2Y56 A;  3ZDG A;  3UQ4 A;  3UU5 A;  1UV6 A;  2XQ9 A;  2XQ4 A;  4A98 A;  5BW2 A;  3TLW A;  4ZK4 A;  4UM3 S;  3TLS A;  5HEO A;  5AFM B;  5JME A;  5AFH A;  5CO5 A;  2XQA A;  2BG9 B;  5HEJ A;  2X00 A;  2ZJV A;  5AFN A;  4IL4 A;  4HFI A;  3RHW A;  4AFG A;  2PH9 A;  3PMZ A;  2XQ3 A;  3RI5 A;  3SIO A;  4ZZC A;  4Z91 A;  2W8G A;  3WTH A;  4QH1 A;  4TNW A;  3WTN A;  5HEG A;  3T4M A;  3JAF A;  3TLT A;  5TVC A;  4EZ1 A;  5AFK A;  4BQT A;  4TWF A;  4UY2 A;  2BG9 C;  5HEH A;  3WTI A;  3WTJ A;  1UW6 A;  3LSV A;  4QAB A;  4ZJS A;  4ILC A;  2BJ0 A;  4ZK1 A;  3RQU A;  2XNU A;  5L4E A;  1UX2 A;  5BP0 A;  3WIP A;  5L47 A;  4UM3 P;  2Y54 A;  2YMD A;  5L4H A;  4ZZB A;  2XZ6 A;  2XNV A;  4XHE A;  4QAA A;  5HEU A;  4LMJ A;  4WV9 A;  3C84 A;  3UU6 A;  2UZ6 A;  3SH1 A;  3ZDH A;  2C9T A;  2WZY A;  3C79 A;  3SQ9 A;  5HCM A;  4NZB A;  3IGQ A;  4TWH A;  4B5D A;  2BYQ A;  3U8M A;  2XQ5 A;  3WTL A;  2X00 D;  2BYS A;  2XQ8 A;  4IL9 A;  2BR7 A;  2XNT A;  5KZU A;  4LML A;  5AFM A;  2YKS A;  4D01 A;  4TWD A;  5KE4 A;  4AFT A;  2BG9 A;  2YN6 A;  2WNL A;  4DBM A;  2Y57 A;  4PIR A;  5J5G A;  3U8J A;  4UM1 A;  3RIA A;  4ZRU A;  2BYR A;  5AFJ A;  5J5F A;  3EI0 A;  2ZJU A;  3UQ7 A;  4ALX A;  2BR8 A;  4IRE A;  3P50 A;  4ZR6 A;  4F8H A;  2QC1 B;  3PEO A;  3SQ6 A;  3WTK A;  4QH5 A;  5SYO A;  5J5I A;  4HQP A;  2BYN A;  2WN9 A;  4BFQ A;  2BYP A;  2YME A;  2XZ5 A;  2W8F A;  4ILA A;  3U8K A;  5J0Z A;  2PGZ A;  4X5T A;  4HFC A; 
#chains in the Genus database with same CATH topology
 2VL0 A;  2Y58 A;  2BG9 E;  3ZKR A;  5CFB A;  2WNC A;  2YOE A;  3P4W A;  4XK9 A;  3RIF A;  3TLV A;  4QH4 A;  4HFE A;  4HFB A;  4HFH A;  5AFL A;  5BRX A;  5FJV A;  4FRR A;  4AFH A;  4TNV A;  2XQ7 A;  3UU3 A;  2WNJ A;  3JAD A;  4NPP A;  4QAC A;  5HCJ A;  2Y7Y A;  3U8L A;  3JAE A;  5J5H A;  5AIN A;  3UUB A;  4COF A;  3EAM A;  3RQW A;  3U8N A;  3UU4 A;  4UXU A;  1I9B A;  2XQ6 A;  4Z90 A;  4ZJT A;  4UM3 A;  5IUX A;  3GUA A;  2XYT A;  2XYS A;  3TLU A;  3WTM A;  4A97 A;  3WTO A;  3UU8 A;  4ILB A;  5LG3 A;  4LMK A;  3EHZ A;  4HFD A;  5LXB A;  2Y56 A;  3ZDG A;  3UQ4 A;  3UU5 A;  1UV6 A;  2XQ9 A;  2XQ4 A;  4A98 A;  5BW2 A;  3TLW A;  4ZK4 A;  4UM3 S;  3TLS A;  5HEO A;  5AFM B;  5JME A;  5AFH A;  5CO5 A;  2XQA A;  2BG9 B;  5HEJ A;  2X00 A;  2ZJV A;  5AFN A;  4IL4 A;  4HFI A;  3RHW A;  4AFG A;  2PH9 A;  3PMZ A;  2XQ3 A;  3RI5 A;  3SIO A;  4ZZC A;  4Z91 A;  2W8G A;  3WTH A;  4QH1 A;  4TNW A;  3WTN A;  5HEG A;  3T4M A;  3JAF A;  3TLT A;  5TVC A;  4EZ1 A;  5AFK A;  4BQT A;  4TWF A;  4UY2 A;  2BG9 C;  5HEH A;  3WTI A;  3WTJ A;  1UW6 A;  3LSV A;  4QAB A;  4ZJS A;  4ILC A;  2BJ0 A;  4ZK1 A;  3RQU A;  2XNU A;  5L4E A;  1UX2 A;  5BP0 A;  3WIP A;  5L47 A;  4UM3 P;  2Y54 A;  2YMD A;  5L4H A;  4ZZB A;  2XZ6 A;  2XNV A;  4XHE A;  4QAA A;  5HEU A;  4LMJ A;  4WV9 A;  3C84 A;  3UU6 A;  2UZ6 A;  3SH1 A;  3ZDH A;  2C9T A;  2WZY A;  3C79 A;  3SQ9 A;  5HCM A;  4NZB A;  3IGQ A;  4TWH A;  4B5D A;  2BYQ A;  3U8M A;  2XQ5 A;  3WTL A;  2X00 D;  2BYS A;  2XQ8 A;  4IL9 A;  2BR7 A;  2XNT A;  5KZU A;  4LML A;  5AFM A;  2YKS A;  4D01 A;  4TWD A;  5KE4 A;  4AFT A;  2BG9 A;  2YN6 A;  2WNL A;  4DBM A;  2Y57 A;  4PIR A;  5J5G A;  3U8J A;  4UM1 A;  3RIA A;  4ZRU A;  2BYR A;  5AFJ A;  5J5F A;  3EI0 A;  2ZJU A;  3UQ7 A;  4ALX A;  2BR8 A;  4IRE A;  3P50 A;  4ZR6 A;  4F8H A;  2QC1 B;  3PEO A;  3SQ6 A;  3WTK A;  4QH5 A;  5SYO A;  5J5I A;  4HQP A;  2BYN A;  2WN9 A;  4BFQ A;  2BYP A;  2YME A;  2XZ5 A;  2W8F A;  4ILA A;  3U8K A;  5J0Z A;  2PGZ A;  4X5T A;  4HFC A; 
#chains in the Genus database with same CATH homology
 2VL0 A;  2Y58 A;  2BG9 E;  3ZKR A;  5CFB A;  2WNC A;  2YOE A;  3P4W A;  4XK9 A;  3RIF A;  3TLV A;  4QH4 A;  4HFE A;  4HFB A;  4HFH A;  5AFL A;  5BRX A;  5FJV A;  4FRR A;  4AFH A;  4TNV A;  2XQ7 A;  3UU3 A;  2WNJ A;  3JAD A;  4NPP A;  4QAC A;  5HCJ A;  2Y7Y A;  3U8L A;  3JAE A;  5J5H A;  5AIN A;  3UUB A;  4COF A;  3EAM A;  3RQW A;  3U8N A;  3UU4 A;  4UXU A;  1I9B A;  2XQ6 A;  4Z90 A;  4ZJT A;  4UM3 A;  5IUX A;  3GUA A;  2XYT A;  2XYS A;  3TLU A;  3WTM A;  4A97 A;  3WTO A;  3UU8 A;  4ILB A;  5LG3 A;  4LMK A;  3EHZ A;  4HFD A;  5LXB A;  2Y56 A;  3ZDG A;  3UQ4 A;  3UU5 A;  1UV6 A;  2XQ9 A;  2XQ4 A;  4A98 A;  5BW2 A;  3TLW A;  4ZK4 A;  4UM3 S;  3TLS A;  5HEO A;  5AFM B;  5JME A;  5AFH A;  5CO5 A;  2XQA A;  2BG9 B;  5HEJ A;  2X00 A;  2ZJV A;  5AFN A;  4IL4 A;  4HFI A;  3RHW A;  4AFG A;  2PH9 A;  3PMZ A;  2XQ3 A;  3RI5 A;  3SIO A;  4ZZC A;  4Z91 A;  2W8G A;  3WTH A;  4QH1 A;  4TNW A;  3WTN A;  5HEG A;  3T4M A;  3JAF A;  3TLT A;  5TVC A;  4EZ1 A;  5AFK A;  4BQT A;  4TWF A;  4UY2 A;  2BG9 C;  5HEH A;  3WTI A;  3WTJ A;  1UW6 A;  3LSV A;  4QAB A;  4ZJS A;  4ILC A;  2BJ0 A;  4ZK1 A;  3RQU A;  2XNU A;  5L4E A;  1UX2 A;  5BP0 A;  3WIP A;  5L47 A;  4UM3 P;  2Y54 A;  2YMD A;  5L4H A;  4ZZB A;  2XZ6 A;  2XNV A;  4XHE A;  4QAA A;  5HEU A;  4LMJ A;  4WV9 A;  3C84 A;  3UU6 A;  2UZ6 A;  3SH1 A;  3ZDH A;  2C9T A;  2WZY A;  3C79 A;  3SQ9 A;  5HCM A;  4NZB A;  3IGQ A;  4TWH A;  4B5D A;  2BYQ A;  3U8M A;  2XQ5 A;  3WTL A;  2X00 D;  2BYS A;  2XQ8 A;  4IL9 A;  2BR7 A;  2XNT A;  5KZU A;  4LML A;  5AFM A;  2YKS A;  4D01 A;  4TWD A;  5KE4 A;  4AFT A;  2BG9 A;  2YN6 A;  2WNL A;  4DBM A;  2Y57 A;  4PIR A;  5J5G A;  3U8J A;  4UM1 A;  3RIA A;  4ZRU A;  2BYR A;  5AFJ A;  5J5F A;  3EI0 A;  2ZJU A;  3UQ7 A;  4ALX A;  2BR8 A;  4IRE A;  3P50 A;  4ZR6 A;  4F8H A;  2QC1 B;  3PEO A;  3SQ6 A;  3WTK A;  4QH5 A;  5SYO A;  5J5I A;  4HQP A;  2BYN A;  2WN9 A;  4BFQ A;  2BYP A;  2YME A;  2XZ5 A;  2W8F A;  4ILA A;  3U8K A;  5J0Z A;  2PGZ A;  4X5T A;  4HFC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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