2X00D

Crystal structure of a-achbp in complex with gymnodimine a
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
212
structure length
212
Chain Sequence
DDDLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
source organism Aplysia californica
publication title Structural Determinants in Phycotoxins and Achbp Conferring High Affinity Binding and Nicotinic Achr Antagonism.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 54
structure length 212
sequence length 212
ec nomenclature
pdb deposition date 2009-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2x00D00
3EI0A 2BYSA 4TNVA 3UU3A 4HFCA 4BFQA 5J5FA 3ZDHA 4QH5A 3U8LA 2WNJA 5HEGA 4B5DA 2BYPA 2YMEA 4ZJSA 3WTJA 2ZJVA 3T4MA 3WIPA 5AFNA 5AFKA 2BYRA 4LMJA 5TVCA 3WTMA 2BYNA 4AFTA 3UUBA 2XNTA 2X00D 5HEHA 5JMEA 4TWFA 4HQPA 5J0ZA 3UQ4A 2W8GA 3P4WA 3P50A 4QH1A 4A97A 2PGZA 3ZKRA 4ZK1A 3TLUA 2Y58A 2YOEA 5LXBA 3U8MA 4QH4A 3IGQA 5L4HA 2BR7A 3WTOA 4COFA 4FRRA 3JAFA 3PMZA 4UY2A 3JAEA 2XYSA 2YMDA 4XK9A 3U8KA 5BP0A 5LG3A 4Z90A 4ZR6A 3RHWA 4QACA 1I9BA 2Y7YA 5HEJA 5AFMB 4TNWA 3LSVA 2XNVA 4NZBA 4QABA 4UXUA 3SIOA 3TLWA 4LMKA 4PIRA 2XZ5A 3PEOA 5CO5A 3UU5A 2WZYA 2BG9E 3EAMA 3UU8A 2BYQA 5AINA 3U8JA 2WNCA 3UQ7A 2WNLA 5HCMA 4ZZCA 3WTNA 3TLVA 1UW6A 2BG9B 4AFGA 4NPPA 2XQ8A 5KZUA 4UM3S 3RQWA 4ZZBA 5L47A 4HFEA 4D01A 5J5IA 2QC1B 2XQAA 4X5TA 3TLSA 5AFJA 4F8HA 5IUXA 3TLTA 4ILAA 4BQTA 4UM3P 4ZRUA 2W8FA 2VL0A 2X00A 1UX2A 2BR8A 2XQ3A 5HEOA 2XYTA 2C9TA 2WN9A 5SYOA 1UV6A 2PH9A 2XQ6A 2XQ4A 4HFDA 3SQ9A 4AFHA 2XQ9A 3WTLA 2Y57A 3SQ6A 3RIFA 4HFHA 4ILCA 3ZDGA 5HCJA 4LMLA 3WTKA 4TWHA 2BG9A 2XNUA 2Y56A 2XQ5A 4IREA 2XQ7A 4WV9A 3C79A 5FJVA 2UZ6A 4ZK4A 5HEUA 3RI5A 4EZ1A 3GUAA 2Y54A 4ZJTA 4QAAA 4DBMA 3EHZA 5CFBA 2ZJUA 4HFIA 3U8NA 3C84A 4Z91A 3RQUA 3WTIA 4UM3A 5J5GA 5AFHA 3SH1A 2BJ0A 5AFMA 3JADA 3UU6A 4HFBA 5J5HA 3UU4A 4TWDA 5AFLA 5BRXA 2YKSA 2BG9C 4A98A 4IL9A 5KE4A 4ILBA 5BW2A 3WTHA 4UM1A 3RIAA 2YN6A 4XHEA 4IL4A 4ALXA 5L4EA 2XZ6A
chains in the Genus database with same CATH superfamily
3EI0A 2BYSA 4TNVA 3UU3A 4HFCA 4BFQA 5J5FA 3ZDHA 4QH5A 3U8LA 2WNJA 5HEGA 4B5DA 2BYPA 2YMEA 4ZJSA 3WTJA 2ZJVA 3T4MA 3WIPA 5AFNA 5AFKA 2BYRA 4LMJA 5TVCA 3WTMA 2BYNA 4AFTA 3UUBA 2XNTA 2X00D 5HEHA 5JMEA 4TWFA 4HQPA 5J0ZA 3UQ4A 2W8GA 3P4WA 3P50A 4QH1A 4A97A 2PGZA 3ZKRA 4ZK1A 3TLUA 2Y58A 2YOEA 5LXBA 3U8MA 4QH4A 3IGQA 5L4HA 2BR7A 3WTOA 4COFA 4FRRA 3JAFA 3PMZA 4UY2A 3JAEA 2XYSA 2YMDA 4XK9A 3U8KA 5BP0A 5LG3A 4Z90A 4ZR6A 3RHWA 4QACA 1I9BA 2Y7YA 5HEJA 5AFMB 4TNWA 3LSVA 2XNVA 4NZBA 4QABA 4UXUA 3SIOA 3TLWA 4LMKA 4PIRA 2XZ5A 3PEOA 5CO5A 3UU5A 2WZYA 2BG9E 3EAMA 3UU8A 2BYQA 5AINA 3U8JA 2WNCA 3UQ7A 2WNLA 5HCMA 4ZZCA 3WTNA 3TLVA 1UW6A 2BG9B 4AFGA 4NPPA 2XQ8A 5KZUA 4UM3S 3RQWA 4ZZBA 5L47A 4HFEA 4D01A 5J5IA 2QC1B 2XQAA 4X5TA 3TLSA 5AFJA 4F8HA 5IUXA 3TLTA 4ILAA 4BQTA 4UM3P 4ZRUA 2W8FA 2VL0A 2X00A 1UX2A 2BR8A 2XQ3A 5HEOA 2XYTA 2C9TA 2WN9A 5SYOA 1UV6A 2PH9A 2XQ6A 2XQ4A 4HFDA 3SQ9A 4AFHA 2XQ9A 3WTLA 2Y57A 3SQ6A 3RIFA 4HFHA 4ILCA 3ZDGA 5HCJA 4LMLA 3WTKA 4TWHA 2BG9A 2XNUA 2Y56A 2XQ5A 4IREA 2XQ7A 4WV9A 3C79A 5FJVA 2UZ6A 4ZK4A 5HEUA 3RI5A 4EZ1A 3GUAA 2Y54A 4ZJTA 4QAAA 4DBMA 3EHZA 5CFBA 2ZJUA 4HFIA 3U8NA 3C84A 4Z91A 3RQUA 3WTIA 4UM3A 5J5GA 5AFHA 3SH1A 2BJ0A 5AFMA 3JADA 3UU6A 4HFBA 5J5HA 3UU4A 4TWDA 5AFLA 5BRXA 2YKSA 2BG9C 4A98A 4IL9A 5KE4A 4ILBA 5BW2A 3WTHA 4UM1A 3RIAA 2YN6A 4XHEA 4IL4A 4ALXA 5L4EA 2XZ6A
chains in the Genus database with same CATH topology
3EI0A 2BYSA 4TNVA 3UU3A 4HFCA 4BFQA 5J5FA 3ZDHA 4QH5A 3U8LA 2WNJA 5HEGA 4B5DA 2BYPA 2YMEA 4ZJSA 3WTJA 2ZJVA 3T4MA 3WIPA 5AFNA 5AFKA 2BYRA 4LMJA 5TVCA 3WTMA 2BYNA 4AFTA 3UUBA 2XNTA 2X00D 5HEHA 5JMEA 4TWFA 4HQPA 5J0ZA 3UQ4A 2W8GA 3P4WA 3P50A 4QH1A 4A97A 2PGZA 3ZKRA 4ZK1A 3TLUA 2Y58A 2YOEA 5LXBA 3U8MA 4QH4A 3IGQA 5L4HA 2BR7A 3WTOA 4COFA 4FRRA 3JAFA 3PMZA 4UY2A 3JAEA 2XYSA 2YMDA 4XK9A 3U8KA 5BP0A 5LG3A 4Z90A 4ZR6A 3RHWA 4QACA 1I9BA 2Y7YA 5HEJA 5AFMB 4TNWA 3LSVA 2XNVA 4NZBA 4QABA 4UXUA 3SIOA 3TLWA 4LMKA 4PIRA 2XZ5A 3PEOA 5CO5A 3UU5A 2WZYA 2BG9E 3EAMA 3UU8A 2BYQA 5AINA 3U8JA 2WNCA 3UQ7A 2WNLA 5HCMA 4ZZCA 3WTNA 3TLVA 1UW6A 2BG9B 4AFGA 4NPPA 2XQ8A 5KZUA 4UM3S 3RQWA 4ZZBA 5L47A 4HFEA 4D01A 5J5IA 2QC1B 2XQAA 4X5TA 3TLSA 5AFJA 4F8HA 5IUXA 3TLTA 4ILAA 4BQTA 4UM3P 4ZRUA 2W8FA 2VL0A 2X00A 1UX2A 2BR8A 2XQ3A 5HEOA 2XYTA 2C9TA 2WN9A 5SYOA 1UV6A 2PH9A 2XQ6A 2XQ4A 4HFDA 3SQ9A 4AFHA 2XQ9A 3WTLA 2Y57A 3SQ6A 3RIFA 4HFHA 4ILCA 3ZDGA 5HCJA 4LMLA 3WTKA 4TWHA 2BG9A 2XNUA 2Y56A 2XQ5A 4IREA 2XQ7A 4WV9A 3C79A 5FJVA 2UZ6A 4ZK4A 5HEUA 3RI5A 4EZ1A 3GUAA 2Y54A 4ZJTA 4QAAA 4DBMA 3EHZA 5CFBA 2ZJUA 4HFIA 3U8NA 3C84A 4Z91A 3RQUA 3WTIA 4UM3A 5J5GA 5AFHA 3SH1A 2BJ0A 5AFMA 3JADA 3UU6A 4HFBA 5J5HA 3UU4A 4TWDA 5AFLA 5BRXA 2YKSA 2BG9C 4A98A 4IL9A 5KE4A 4ILBA 5BW2A 3WTHA 4UM1A 3RIAA 2YN6A 4XHEA 4IL4A 4ALXA 5L4EA 2XZ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EI0 A;  2BYS A;  4TNV A;  3UU3 A;  4HFC A;  4BFQ A;  5J5F A;  3ZDH A;  4QH5 A;  3U8L A;  2WNJ A;  5HEG A;  4B5D A;  2BYP A;  2YME A;  4ZJS A;  3WTJ A;  2ZJV A;  3T4M A;  3WIP A;  5AFN A;  5AFK A;  2BYR A;  4LMJ A;  5TVC A;  3WTM A;  2BYN A;  4AFT A;  3UUB A;  2XNT A;  2X00 D;  5HEH A;  5JME A;  4TWF A;  4HQP A;  5J0Z A;  3UQ4 A;  2W8G A;  3P4W A;  3P50 A;  4QH1 A;  4A97 A;  2PGZ A;  3ZKR A;  4ZK1 A;  3TLU A;  2Y58 A;  2YOE A;  5LXB A;  3U8M A;  4QH4 A;  3IGQ A;  5L4H A;  2BR7 A;  3WTO A;  4COF A;  4FRR A;  3JAF A;  3PMZ A;  4UY2 A;  3JAE A;  2XYS A;  2YMD A;  4XK9 A;  3U8K A;  5BP0 A;  5LG3 A;  4Z90 A;  4ZR6 A;  3RHW A;  4QAC A;  1I9B A;  2Y7Y A;  5HEJ A;  5AFM B;  4TNW A;  3LSV A;  2XNV A;  4NZB A;  4QAB A;  4UXU A;  3SIO A;  3TLW A;  4LMK A;  4PIR A;  2XZ5 A;  3PEO A;  5CO5 A;  3UU5 A;  2WZY A;  2BG9 E;  3EAM A;  3UU8 A;  2BYQ A;  5AIN A;  3U8J A;  2WNC A;  3UQ7 A;  2WNL A;  5HCM A;  4ZZC A;  3WTN A;  3TLV A;  1UW6 A;  2BG9 B;  4AFG A;  4NPP A;  2XQ8 A;  5KZU A;  4UM3 S;  3RQW A;  4ZZB A;  5L47 A;  4HFE A;  4D01 A;  5J5I A;  2QC1 B;  2XQA A;  4X5T A;  3TLS A;  5AFJ A;  4F8H A;  5IUX A;  3TLT A;  4ILA A;  4BQT A;  4UM3 P;  4ZRU A;  2W8F A;  2VL0 A;  2X00 A;  1UX2 A;  2BR8 A;  2XQ3 A;  5HEO A;  2XYT A;  2C9T A;  2WN9 A;  5SYO A;  1UV6 A;  2PH9 A;  2XQ6 A;  2XQ4 A;  4HFD A;  3SQ9 A;  4AFH A;  2XQ9 A;  3WTL A;  2Y57 A;  3SQ6 A;  3RIF A;  4HFH A;  4ILC A;  3ZDG A;  5HCJ A;  4LML A;  3WTK A;  4TWH A;  2BG9 A;  2XNU A;  2Y56 A;  2XQ5 A;  4IRE A;  2XQ7 A;  4WV9 A;  3C79 A;  5FJV A;  2UZ6 A;  4ZK4 A;  5HEU A;  3RI5 A;  4EZ1 A;  3GUA A;  2Y54 A;  4ZJT A;  4QAA A;  4DBM A;  3EHZ A;  5CFB A;  2ZJU A;  4HFI A;  3U8N A;  3C84 A;  4Z91 A;  3RQU A;  3WTI A;  4UM3 A;  5J5G A;  5AFH A;  3SH1 A;  2BJ0 A;  5AFM A;  3JAD A;  3UU6 A;  4HFB A;  5J5H A;  3UU4 A;  4TWD A;  5AFL A;  5BRX A;  2YKS A;  2BG9 C;  4A98 A;  4IL9 A;  5KE4 A;  4ILB A;  5BW2 A;  3WTH A;  4UM1 A;  3RIA A;  2YN6 A;  4XHE A;  4IL4 A;  4ALX A;  5L4E A;  2XZ6 A; 
#chains in the Genus database with same CATH topology
 3EI0 A;  2BYS A;  4TNV A;  3UU3 A;  4HFC A;  4BFQ A;  5J5F A;  3ZDH A;  4QH5 A;  3U8L A;  2WNJ A;  5HEG A;  4B5D A;  2BYP A;  2YME A;  4ZJS A;  3WTJ A;  2ZJV A;  3T4M A;  3WIP A;  5AFN A;  5AFK A;  2BYR A;  4LMJ A;  5TVC A;  3WTM A;  2BYN A;  4AFT A;  3UUB A;  2XNT A;  2X00 D;  5HEH A;  5JME A;  4TWF A;  4HQP A;  5J0Z A;  3UQ4 A;  2W8G A;  3P4W A;  3P50 A;  4QH1 A;  4A97 A;  2PGZ A;  3ZKR A;  4ZK1 A;  3TLU A;  2Y58 A;  2YOE A;  5LXB A;  3U8M A;  4QH4 A;  3IGQ A;  5L4H A;  2BR7 A;  3WTO A;  4COF A;  4FRR A;  3JAF A;  3PMZ A;  4UY2 A;  3JAE A;  2XYS A;  2YMD A;  4XK9 A;  3U8K A;  5BP0 A;  5LG3 A;  4Z90 A;  4ZR6 A;  3RHW A;  4QAC A;  1I9B A;  2Y7Y A;  5HEJ A;  5AFM B;  4TNW A;  3LSV A;  2XNV A;  4NZB A;  4QAB A;  4UXU A;  3SIO A;  3TLW A;  4LMK A;  4PIR A;  2XZ5 A;  3PEO A;  5CO5 A;  3UU5 A;  2WZY A;  2BG9 E;  3EAM A;  3UU8 A;  2BYQ A;  5AIN A;  3U8J A;  2WNC A;  3UQ7 A;  2WNL A;  5HCM A;  4ZZC A;  3WTN A;  3TLV A;  1UW6 A;  2BG9 B;  4AFG A;  4NPP A;  2XQ8 A;  5KZU A;  4UM3 S;  3RQW A;  4ZZB A;  5L47 A;  4HFE A;  4D01 A;  5J5I A;  2QC1 B;  2XQA A;  4X5T A;  3TLS A;  5AFJ A;  4F8H A;  5IUX A;  3TLT A;  4ILA A;  4BQT A;  4UM3 P;  4ZRU A;  2W8F A;  2VL0 A;  2X00 A;  1UX2 A;  2BR8 A;  2XQ3 A;  5HEO A;  2XYT A;  2C9T A;  2WN9 A;  5SYO A;  1UV6 A;  2PH9 A;  2XQ6 A;  2XQ4 A;  4HFD A;  3SQ9 A;  4AFH A;  2XQ9 A;  3WTL A;  2Y57 A;  3SQ6 A;  3RIF A;  4HFH A;  4ILC A;  3ZDG A;  5HCJ A;  4LML A;  3WTK A;  4TWH A;  2BG9 A;  2XNU A;  2Y56 A;  2XQ5 A;  4IRE A;  2XQ7 A;  4WV9 A;  3C79 A;  5FJV A;  2UZ6 A;  4ZK4 A;  5HEU A;  3RI5 A;  4EZ1 A;  3GUA A;  2Y54 A;  4ZJT A;  4QAA A;  4DBM A;  3EHZ A;  5CFB A;  2ZJU A;  4HFI A;  3U8N A;  3C84 A;  4Z91 A;  3RQU A;  3WTI A;  4UM3 A;  5J5G A;  5AFH A;  3SH1 A;  2BJ0 A;  5AFM A;  3JAD A;  3UU6 A;  4HFB A;  5J5H A;  3UU4 A;  4TWD A;  5AFL A;  5BRX A;  2YKS A;  2BG9 C;  4A98 A;  4IL9 A;  5KE4 A;  4ILB A;  5BW2 A;  3WTH A;  4UM1 A;  3RIA A;  2YN6 A;  4XHE A;  4IL4 A;  4ALX A;  5L4E A;  2XZ6 A; 
#chains in the Genus database with same CATH homology
 3EI0 A;  2BYS A;  4TNV A;  3UU3 A;  4HFC A;  4BFQ A;  5J5F A;  3ZDH A;  4QH5 A;  3U8L A;  2WNJ A;  5HEG A;  4B5D A;  2BYP A;  2YME A;  4ZJS A;  3WTJ A;  2ZJV A;  3T4M A;  3WIP A;  5AFN A;  5AFK A;  2BYR A;  4LMJ A;  5TVC A;  3WTM A;  2BYN A;  4AFT A;  3UUB A;  2XNT A;  2X00 D;  5HEH A;  5JME A;  4TWF A;  4HQP A;  5J0Z A;  3UQ4 A;  2W8G A;  3P4W A;  3P50 A;  4QH1 A;  4A97 A;  2PGZ A;  3ZKR A;  4ZK1 A;  3TLU A;  2Y58 A;  2YOE A;  5LXB A;  3U8M A;  4QH4 A;  3IGQ A;  5L4H A;  2BR7 A;  3WTO A;  4COF A;  4FRR A;  3JAF A;  3PMZ A;  4UY2 A;  3JAE A;  2XYS A;  2YMD A;  4XK9 A;  3U8K A;  5BP0 A;  5LG3 A;  4Z90 A;  4ZR6 A;  3RHW A;  4QAC A;  1I9B A;  2Y7Y A;  5HEJ A;  5AFM B;  4TNW A;  3LSV A;  2XNV A;  4NZB A;  4QAB A;  4UXU A;  3SIO A;  3TLW A;  4LMK A;  4PIR A;  2XZ5 A;  3PEO A;  5CO5 A;  3UU5 A;  2WZY A;  2BG9 E;  3EAM A;  3UU8 A;  2BYQ A;  5AIN A;  3U8J A;  2WNC A;  3UQ7 A;  2WNL A;  5HCM A;  4ZZC A;  3WTN A;  3TLV A;  1UW6 A;  2BG9 B;  4AFG A;  4NPP A;  2XQ8 A;  5KZU A;  4UM3 S;  3RQW A;  4ZZB A;  5L47 A;  4HFE A;  4D01 A;  5J5I A;  2QC1 B;  2XQA A;  4X5T A;  3TLS A;  5AFJ A;  4F8H A;  5IUX A;  3TLT A;  4ILA A;  4BQT A;  4UM3 P;  4ZRU A;  2W8F A;  2VL0 A;  2X00 A;  1UX2 A;  2BR8 A;  2XQ3 A;  5HEO A;  2XYT A;  2C9T A;  2WN9 A;  5SYO A;  1UV6 A;  2PH9 A;  2XQ6 A;  2XQ4 A;  4HFD A;  3SQ9 A;  4AFH A;  2XQ9 A;  3WTL A;  2Y57 A;  3SQ6 A;  3RIF A;  4HFH A;  4ILC A;  3ZDG A;  5HCJ A;  4LML A;  3WTK A;  4TWH A;  2BG9 A;  2XNU A;  2Y56 A;  2XQ5 A;  4IRE A;  2XQ7 A;  4WV9 A;  3C79 A;  5FJV A;  2UZ6 A;  4ZK4 A;  5HEU A;  3RI5 A;  4EZ1 A;  3GUA A;  2Y54 A;  4ZJT A;  4QAA A;  4DBM A;  3EHZ A;  5CFB A;  2ZJU A;  4HFI A;  3U8N A;  3C84 A;  4Z91 A;  3RQU A;  3WTI A;  4UM3 A;  5J5G A;  5AFH A;  3SH1 A;  2BJ0 A;  5AFM A;  3JAD A;  3UU6 A;  4HFB A;  5J5H A;  3UU4 A;  4TWD A;  5AFL A;  5BRX A;  2YKS A;  2BG9 C;  4A98 A;  4IL9 A;  5KE4 A;  4ILB A;  5BW2 A;  3WTH A;  4UM1 A;  3RIA A;  2YN6 A;  4XHE A;  4IL4 A;  4ALX A;  5L4E A;  2XZ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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