2X00D

Crystal structure of a-achbp in complex with gymnodimine a
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
212
structure length
212
Chain Sequence
b'DDDLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Determinants in Phycotoxins and Achbp Conferring High Affinity Binding and Nicotinic Achr Antagonism.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
source organism Aplysia californica
molecule tags Receptor
total genus 54
structure length 212
sequence length 212
ec nomenclature
pdb deposition date 2009-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2x00D00
4HFEA 5JMEA 5TVCA 5BP0A 4XHEA 2XQ7A 2Y7YA 4IL9A 2BG9C 2BYQA 2XZ5A 1UX2A 1UV6A 3EAMA 2VL0A 4BFQA 4ZJTA 4HFBA 2WN9A 2XQ6A 4HFIA 4UM1A 3RIAA 3JAFA 2BYNA 2YN6A 2YMEA 5AINA 4QAAA 3EHZA 5AFMA 4ZZBA 5L4HA 5CO5A 2BYRA 4HFDA 4HFCA 4UM3A 3WTMA 2PGZA 4UM3P 3UUBA 5J5FA 3U8MA 3P4WA 4AFTA 3TLUA 4AFGA 4ALXA 2BG9B 5KZUA 4FRRA 3RQWA 2WNCA 4TWHA 3TLSA 2XYTA 3SIOA 3U8NA 4NPPA 5BRXA 2BG9E 5CFBA 4A97A 3RHWA 5J5GA 4B5DA 2XQAA 5IUXA 2UZ6A 2YMDA 4NZBA 4UXUA 3WTLA 3SQ9A 2Y54A 2XZ6A 2BJ0A 4F8HA 2QC1B 2BR7A 4TNWA 3UU3A 3WTHA 5AFHA 3TLWA 4IL4A 2WNJA 2XQ3A 2ZJVA 4Z91A 5BW2A 3WTIA 5J5IA 3RI5A 4COFA 3UQ7A 2X00A 3IGQA 4D01A 3SQ6A 4ZZCA 5AFNA 4HFHA 2YKSA 4BQTA 4QABA 5AFKA 5HEGA 2XNTA 4Z90A 4ZR6A 2XQ9A 2BG9A 5HEHA 4ZK1A 4ILCA 3WTJA 3ZKRA 2XQ4A 5HEJA 3JADA 3UU4A 4QH1A 4A98A 2W8FA 4AFHA 3U8LA 5L47A 2ZJUA 3JAEA 2BR8A 4QH4A 2XQ5A 3WTOA 3PMZA 4TWFA 3TLTA 2XNVA 3ZDHA 4UY2A 3WIPA 3GUAA 3EI0A 3PEOA 1I9BA 2YOEA 4IREA 5L4EA 1UW6A 2X00D 4ILBA 3TLVA 3UQ4A 2Y56A 3RQUA 4XK9A 3ZDGA 5KE4A 2C9TA 5HCJA 3SH1A 3WTKA 5HEOA 2WZYA 5AFJA 4LMLA 3UU5A 5J0ZA 5HCMA 3UU8A 2W8GA 2Y58A 4TWDA 5FJVA 5AFMB 5LXBA 4LMJA 4ZJSA 4EZ1A 3C84A 3T4MA 4QH5A 3U8JA 4PIRA 3WTNA 3P50A 4HQPA 5AFLA 2XNUA 2PH9A 4X5TA 5SYOA 3UU6A 5HEUA 4ILAA 3U8KA 4UM3S 2BYPA 4ZK4A 4DBMA 5J5HA 4TNVA 3LSVA 4ZRUA 3C79A 4WV9A 2Y57A 2XYSA 3RIFA 2XQ8A 4LMKA 5LG3A 2BYSA 4QACA 2WNLA
chains in the Genus database with same CATH superfamily
4HFEA 5JMEA 5TVCA 5BP0A 4XHEA 2XQ7A 2Y7YA 4IL9A 2BG9C 2BYQA 2XZ5A 1UX2A 1UV6A 3EAMA 2VL0A 4BFQA 4ZJTA 4HFBA 2WN9A 2XQ6A 4HFIA 4UM1A 3RIAA 3JAFA 2BYNA 2YN6A 2YMEA 5AINA 4QAAA 3EHZA 5AFMA 4ZZBA 5L4HA 5CO5A 2BYRA 4HFDA 4HFCA 4UM3A 3WTMA 2PGZA 4UM3P 3UUBA 5J5FA 3U8MA 3P4WA 4AFTA 3TLUA 4AFGA 4ALXA 2BG9B 5KZUA 4FRRA 3RQWA 2WNCA 4TWHA 3TLSA 2XYTA 3SIOA 3U8NA 4NPPA 5BRXA 2BG9E 5CFBA 4A97A 3RHWA 5J5GA 4B5DA 2XQAA 5IUXA 2UZ6A 2YMDA 4NZBA 4UXUA 3WTLA 3SQ9A 2Y54A 2XZ6A 2BJ0A 4F8HA 2QC1B 2BR7A 4TNWA 3UU3A 3WTHA 5AFHA 3TLWA 4IL4A 2WNJA 2XQ3A 2ZJVA 4Z91A 5BW2A 3WTIA 5J5IA 3RI5A 4COFA 3UQ7A 2X00A 3IGQA 4D01A 3SQ6A 4ZZCA 5AFNA 4HFHA 2YKSA 4BQTA 4QABA 5AFKA 5HEGA 2XNTA 4Z90A 4ZR6A 2XQ9A 2BG9A 5HEHA 4ZK1A 4ILCA 3WTJA 3ZKRA 2XQ4A 5HEJA 3JADA 3UU4A 4QH1A 4A98A 2W8FA 4AFHA 3U8LA 5L47A 2ZJUA 3JAEA 2BR8A 4QH4A 2XQ5A 3WTOA 3PMZA 4TWFA 3TLTA 2XNVA 3ZDHA 4UY2A 3WIPA 3GUAA 3EI0A 3PEOA 1I9BA 2YOEA 4IREA 5L4EA 1UW6A 2X00D 4ILBA 3TLVA 3UQ4A 2Y56A 3RQUA 4XK9A 3ZDGA 5KE4A 2C9TA 5HCJA 3SH1A 3WTKA 5HEOA 2WZYA 5AFJA 4LMLA 3UU5A 5J0ZA 5HCMA 3UU8A 2W8GA 2Y58A 4TWDA 5FJVA 5AFMB 5LXBA 4LMJA 4ZJSA 4EZ1A 3C84A 3T4MA 4QH5A 3U8JA 4PIRA 3WTNA 3P50A 4HQPA 5AFLA 2XNUA 2PH9A 4X5TA 5SYOA 3UU6A 5HEUA 4ILAA 3U8KA 4UM3S 2BYPA 4ZK4A 4DBMA 5J5HA 4TNVA 3LSVA 4ZRUA 3C79A 4WV9A 2Y57A 2XYSA 3RIFA 2XQ8A 4LMKA 5LG3A 2BYSA 4QACA 2WNLA
chains in the Genus database with same CATH topology
4HFEA 5JMEA 5TVCA 5BP0A 4XHEA 2XQ7A 2Y7YA 4IL9A 2BG9C 2BYQA 2XZ5A 1UX2A 1UV6A 3EAMA 2VL0A 4BFQA 4ZJTA 4HFBA 2WN9A 2XQ6A 4HFIA 4UM1A 3RIAA 3JAFA 2BYNA 2YN6A 2YMEA 5AINA 4QAAA 3EHZA 5AFMA 4ZZBA 5L4HA 5CO5A 2BYRA 4HFDA 4HFCA 4UM3A 3WTMA 2PGZA 4UM3P 3UUBA 5J5FA 3U8MA 3P4WA 4AFTA 3TLUA 4AFGA 4ALXA 2BG9B 5KZUA 4FRRA 3RQWA 2WNCA 4TWHA 3TLSA 2XYTA 3SIOA 3U8NA 4NPPA 5BRXA 2BG9E 5CFBA 4A97A 3RHWA 5J5GA 4B5DA 2XQAA 5IUXA 2UZ6A 2YMDA 4NZBA 4UXUA 3WTLA 3SQ9A 2Y54A 2XZ6A 2BJ0A 4F8HA 2QC1B 2BR7A 4TNWA 3UU3A 3WTHA 5AFHA 3TLWA 4IL4A 2WNJA 2XQ3A 2ZJVA 4Z91A 5BW2A 3WTIA 5J5IA 3RI5A 4COFA 3UQ7A 2X00A 3IGQA 4D01A 3SQ6A 4ZZCA 5AFNA 4HFHA 2YKSA 4BQTA 4QABA 5AFKA 5HEGA 2XNTA 4Z90A 4ZR6A 2XQ9A 2BG9A 5HEHA 4ZK1A 4ILCA 3WTJA 3ZKRA 2XQ4A 5HEJA 3JADA 3UU4A 4QH1A 4A98A 2W8FA 4AFHA 3U8LA 5L47A 2ZJUA 3JAEA 2BR8A 4QH4A 2XQ5A 3WTOA 3PMZA 4TWFA 3TLTA 2XNVA 3ZDHA 4UY2A 3WIPA 3GUAA 3EI0A 3PEOA 1I9BA 2YOEA 4IREA 5L4EA 1UW6A 2X00D 4ILBA 3TLVA 3UQ4A 2Y56A 3RQUA 4XK9A 3ZDGA 5KE4A 2C9TA 5HCJA 3SH1A 3WTKA 5HEOA 2WZYA 5AFJA 4LMLA 3UU5A 5J0ZA 5HCMA 3UU8A 2W8GA 2Y58A 4TWDA 5FJVA 5AFMB 5LXBA 4LMJA 4ZJSA 4EZ1A 3C84A 3T4MA 4QH5A 3U8JA 4PIRA 3WTNA 3P50A 4HQPA 5AFLA 2XNUA 2PH9A 4X5TA 5SYOA 3UU6A 5HEUA 4ILAA 3U8KA 4UM3S 2BYPA 4ZK4A 4DBMA 5J5HA 4TNVA 3LSVA 4ZRUA 3C79A 4WV9A 2Y57A 2XYSA 3RIFA 2XQ8A 4LMKA 5LG3A 2BYSA 4QACA 2WNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFE A;  5JME A;  5TVC A;  5BP0 A;  4XHE A;  2XQ7 A;  2Y7Y A;  4IL9 A;  2BG9 C;  2BYQ A;  2XZ5 A;  1UX2 A;  1UV6 A;  3EAM A;  2VL0 A;  4BFQ A;  4ZJT A;  4HFB A;  2WN9 A;  2XQ6 A;  4HFI A;  4UM1 A;  3RIA A;  3JAF A;  2BYN A;  2YN6 A;  2YME A;  5AIN A;  4QAA A;  3EHZ A;  5AFM A;  4ZZB A;  5L4H A;  5CO5 A;  2BYR A;  4HFD A;  4HFC A;  4UM3 A;  3WTM A;  2PGZ A;  4UM3 P;  3UUB A;  5J5F A;  3U8M A;  3P4W A;  4AFT A;  3TLU A;  4AFG A;  4ALX A;  2BG9 B;  5KZU A;  4FRR A;  3RQW A;  2WNC A;  4TWH A;  3TLS A;  2XYT A;  3SIO A;  3U8N A;  4NPP A;  5BRX A;  2BG9 E;  5CFB A;  4A97 A;  3RHW A;  5J5G A;  4B5D A;  2XQA A;  5IUX A;  2UZ6 A;  2YMD A;  4NZB A;  4UXU A;  3WTL A;  3SQ9 A;  2Y54 A;  2XZ6 A;  2BJ0 A;  4F8H A;  2QC1 B;  2BR7 A;  4TNW A;  3UU3 A;  3WTH A;  5AFH A;  3TLW A;  4IL4 A;  2WNJ A;  2XQ3 A;  2ZJV A;  4Z91 A;  5BW2 A;  3WTI A;  5J5I A;  3RI5 A;  4COF A;  3UQ7 A;  2X00 A;  3IGQ A;  4D01 A;  3SQ6 A;  4ZZC A;  5AFN A;  4HFH A;  2YKS A;  4BQT A;  4QAB A;  5AFK A;  5HEG A;  2XNT A;  4Z90 A;  4ZR6 A;  2XQ9 A;  2BG9 A;  5HEH A;  4ZK1 A;  4ILC A;  3WTJ A;  3ZKR A;  2XQ4 A;  5HEJ A;  3JAD A;  3UU4 A;  4QH1 A;  4A98 A;  2W8F A;  4AFH A;  3U8L A;  5L47 A;  2ZJU A;  3JAE A;  2BR8 A;  4QH4 A;  2XQ5 A;  3WTO A;  3PMZ A;  4TWF A;  3TLT A;  2XNV A;  3ZDH A;  4UY2 A;  3WIP A;  3GUA A;  3EI0 A;  3PEO A;  1I9B A;  2YOE A;  4IRE A;  5L4E A;  1UW6 A;  2X00 D;  4ILB A;  3TLV A;  3UQ4 A;  2Y56 A;  3RQU A;  4XK9 A;  3ZDG A;  5KE4 A;  2C9T A;  5HCJ A;  3SH1 A;  3WTK A;  5HEO A;  2WZY A;  5AFJ A;  4LML A;  3UU5 A;  5J0Z A;  5HCM A;  3UU8 A;  2W8G A;  2Y58 A;  4TWD A;  5FJV A;  5AFM B;  5LXB A;  4LMJ A;  4ZJS A;  4EZ1 A;  3C84 A;  3T4M A;  4QH5 A;  3U8J A;  4PIR A;  3WTN A;  3P50 A;  4HQP A;  5AFL A;  2XNU A;  2PH9 A;  4X5T A;  5SYO A;  3UU6 A;  5HEU A;  4ILA A;  3U8K A;  4UM3 S;  2BYP A;  4ZK4 A;  4DBM A;  5J5H A;  4TNV A;  3LSV A;  4ZRU A;  3C79 A;  4WV9 A;  2Y57 A;  2XYS A;  3RIF A;  2XQ8 A;  4LMK A;  5LG3 A;  2BYS A;  4QAC A;  2WNL A; 
#chains in the Genus database with same CATH topology
 4HFE A;  5JME A;  5TVC A;  5BP0 A;  4XHE A;  2XQ7 A;  2Y7Y A;  4IL9 A;  2BG9 C;  2BYQ A;  2XZ5 A;  1UX2 A;  1UV6 A;  3EAM A;  2VL0 A;  4BFQ A;  4ZJT A;  4HFB A;  2WN9 A;  2XQ6 A;  4HFI A;  4UM1 A;  3RIA A;  3JAF A;  2BYN A;  2YN6 A;  2YME A;  5AIN A;  4QAA A;  3EHZ A;  5AFM A;  4ZZB A;  5L4H A;  5CO5 A;  2BYR A;  4HFD A;  4HFC A;  4UM3 A;  3WTM A;  2PGZ A;  4UM3 P;  3UUB A;  5J5F A;  3U8M A;  3P4W A;  4AFT A;  3TLU A;  4AFG A;  4ALX A;  2BG9 B;  5KZU A;  4FRR A;  3RQW A;  2WNC A;  4TWH A;  3TLS A;  2XYT A;  3SIO A;  3U8N A;  4NPP A;  5BRX A;  2BG9 E;  5CFB A;  4A97 A;  3RHW A;  5J5G A;  4B5D A;  2XQA A;  5IUX A;  2UZ6 A;  2YMD A;  4NZB A;  4UXU A;  3WTL A;  3SQ9 A;  2Y54 A;  2XZ6 A;  2BJ0 A;  4F8H A;  2QC1 B;  2BR7 A;  4TNW A;  3UU3 A;  3WTH A;  5AFH A;  3TLW A;  4IL4 A;  2WNJ A;  2XQ3 A;  2ZJV A;  4Z91 A;  5BW2 A;  3WTI A;  5J5I A;  3RI5 A;  4COF A;  3UQ7 A;  2X00 A;  3IGQ A;  4D01 A;  3SQ6 A;  4ZZC A;  5AFN A;  4HFH A;  2YKS A;  4BQT A;  4QAB A;  5AFK A;  5HEG A;  2XNT A;  4Z90 A;  4ZR6 A;  2XQ9 A;  2BG9 A;  5HEH A;  4ZK1 A;  4ILC A;  3WTJ A;  3ZKR A;  2XQ4 A;  5HEJ A;  3JAD A;  3UU4 A;  4QH1 A;  4A98 A;  2W8F A;  4AFH A;  3U8L A;  5L47 A;  2ZJU A;  3JAE A;  2BR8 A;  4QH4 A;  2XQ5 A;  3WTO A;  3PMZ A;  4TWF A;  3TLT A;  2XNV A;  3ZDH A;  4UY2 A;  3WIP A;  3GUA A;  3EI0 A;  3PEO A;  1I9B A;  2YOE A;  4IRE A;  5L4E A;  1UW6 A;  2X00 D;  4ILB A;  3TLV A;  3UQ4 A;  2Y56 A;  3RQU A;  4XK9 A;  3ZDG A;  5KE4 A;  2C9T A;  5HCJ A;  3SH1 A;  3WTK A;  5HEO A;  2WZY A;  5AFJ A;  4LML A;  3UU5 A;  5J0Z A;  5HCM A;  3UU8 A;  2W8G A;  2Y58 A;  4TWD A;  5FJV A;  5AFM B;  5LXB A;  4LMJ A;  4ZJS A;  4EZ1 A;  3C84 A;  3T4M A;  4QH5 A;  3U8J A;  4PIR A;  3WTN A;  3P50 A;  4HQP A;  5AFL A;  2XNU A;  2PH9 A;  4X5T A;  5SYO A;  3UU6 A;  5HEU A;  4ILA A;  3U8K A;  4UM3 S;  2BYP A;  4ZK4 A;  4DBM A;  5J5H A;  4TNV A;  3LSV A;  4ZRU A;  3C79 A;  4WV9 A;  2Y57 A;  2XYS A;  3RIF A;  2XQ8 A;  4LMK A;  5LG3 A;  2BYS A;  4QAC A;  2WNL A; 
#chains in the Genus database with same CATH homology
 4HFE A;  5JME A;  5TVC A;  5BP0 A;  4XHE A;  2XQ7 A;  2Y7Y A;  4IL9 A;  2BG9 C;  2BYQ A;  2XZ5 A;  1UX2 A;  1UV6 A;  3EAM A;  2VL0 A;  4BFQ A;  4ZJT A;  4HFB A;  2WN9 A;  2XQ6 A;  4HFI A;  4UM1 A;  3RIA A;  3JAF A;  2BYN A;  2YN6 A;  2YME A;  5AIN A;  4QAA A;  3EHZ A;  5AFM A;  4ZZB A;  5L4H A;  5CO5 A;  2BYR A;  4HFD A;  4HFC A;  4UM3 A;  3WTM A;  2PGZ A;  4UM3 P;  3UUB A;  5J5F A;  3U8M A;  3P4W A;  4AFT A;  3TLU A;  4AFG A;  4ALX A;  2BG9 B;  5KZU A;  4FRR A;  3RQW A;  2WNC A;  4TWH A;  3TLS A;  2XYT A;  3SIO A;  3U8N A;  4NPP A;  5BRX A;  2BG9 E;  5CFB A;  4A97 A;  3RHW A;  5J5G A;  4B5D A;  2XQA A;  5IUX A;  2UZ6 A;  2YMD A;  4NZB A;  4UXU A;  3WTL A;  3SQ9 A;  2Y54 A;  2XZ6 A;  2BJ0 A;  4F8H A;  2QC1 B;  2BR7 A;  4TNW A;  3UU3 A;  3WTH A;  5AFH A;  3TLW A;  4IL4 A;  2WNJ A;  2XQ3 A;  2ZJV A;  4Z91 A;  5BW2 A;  3WTI A;  5J5I A;  3RI5 A;  4COF A;  3UQ7 A;  2X00 A;  3IGQ A;  4D01 A;  3SQ6 A;  4ZZC A;  5AFN A;  4HFH A;  2YKS A;  4BQT A;  4QAB A;  5AFK A;  5HEG A;  2XNT A;  4Z90 A;  4ZR6 A;  2XQ9 A;  2BG9 A;  5HEH A;  4ZK1 A;  4ILC A;  3WTJ A;  3ZKR A;  2XQ4 A;  5HEJ A;  3JAD A;  3UU4 A;  4QH1 A;  4A98 A;  2W8F A;  4AFH A;  3U8L A;  5L47 A;  2ZJU A;  3JAE A;  2BR8 A;  4QH4 A;  2XQ5 A;  3WTO A;  3PMZ A;  4TWF A;  3TLT A;  2XNV A;  3ZDH A;  4UY2 A;  3WIP A;  3GUA A;  3EI0 A;  3PEO A;  1I9B A;  2YOE A;  4IRE A;  5L4E A;  1UW6 A;  2X00 D;  4ILB A;  3TLV A;  3UQ4 A;  2Y56 A;  3RQU A;  4XK9 A;  3ZDG A;  5KE4 A;  2C9T A;  5HCJ A;  3SH1 A;  3WTK A;  5HEO A;  2WZY A;  5AFJ A;  4LML A;  3UU5 A;  5J0Z A;  5HCM A;  3UU8 A;  2W8G A;  2Y58 A;  4TWD A;  5FJV A;  5AFM B;  5LXB A;  4LMJ A;  4ZJS A;  4EZ1 A;  3C84 A;  3T4M A;  4QH5 A;  3U8J A;  4PIR A;  3WTN A;  3P50 A;  4HQP A;  5AFL A;  2XNU A;  2PH9 A;  4X5T A;  5SYO A;  3UU6 A;  5HEU A;  4ILA A;  3U8K A;  4UM3 S;  2BYP A;  4ZK4 A;  4DBM A;  5J5H A;  4TNV A;  3LSV A;  4ZRU A;  3C79 A;  4WV9 A;  2Y57 A;  2XYS A;  3RIF A;  2XQ8 A;  4LMK A;  5LG3 A;  2BYS A;  4QAC A;  2WNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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