2X27X

Crystal structure of the outer membrane protein oprg from pseudomonas aeruginosa
Total Genus 55
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
212
structure length
209
Chain Sequence
DIQGHKAGDFIIRGGFATVDPDDSSSDIKLDGAKQRGTKATVDSDTQLGLTFTYMFADKWGVELVAATPFNHQVDVKGLLDGKLADIKQLPPTLLLQYYPMGGTNSAFQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDTKASINGPSALGVNKTKVDVDVDPWVYMIGFGYKFHA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords OUTER MEMBRANE PROTEIN OPRG
publication title The Crystal Structure of Oprg from Pseudomonas Aeruginosa, a Potential Channel for Transport of Hydrophobic Molecules Across the Outer Membrane.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 55
structure length 209
sequence length 212
ec nomenclature
pdb deposition date 2010-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF03922 OmpW OmpW family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 2x27X00
3QRCA 2MHLA 1QJ9A 1MM5A 1P4TA 2LHFA 3G7GA 1Q9FA 1ORMA 1Q9GA 2F1TA 1THQA 3QRAA 1MM4A 2F1VA 3C5OA 1QJ8A 2MNHA 4RLCA 2N2MA 4PUXA 2N2LA 2K0LA 1QJPA 2M06A 1BXWA 2X27X 2ERVA 2JMMA 1G90A 2GE4A 3GP6A 2M07A
chains in the Genus database with same CATH superfamily
3POUA 3T24A 5DL8A 3AA1B 4KRAA 4RJWA 1QJ9A 4GCSA 1T16A 4AYID 8PRNA 5DL6A 4RJXA 5TISO 5GV0A 2FGRA 3HW9A 4K3CA 3UU2A 5H2FO 4GCQA 4O4UA 2WJRA 4LSIA 2OMFA 4E1SA 5B5EO 2PRNA 1ORMA 2AXTO 1GFOA 3PGUA 5T5FA 3AA0A 3QRAA 3VZWX 1GFMA 1MM4A 3POXA 4LSFA 3LK41 3PQUA 4O3XB 2MNHA 3HOEA 2PORA 1ZHZA 2N2MA 4Z3TA 5GTHO 5JDPA 5EE2A 2K0LA 2W80C 3PGSA 1GFPA 3DWNA 1BXWA 5E79O 5AFUL 4KR4A 2ZLDA 3DWOX 4O4XA 2Y7SA 4K3BA 3A2SX 2JMMA 2GE4A 2XMXA 3VZUX 1PHOA 2X9KA 2KZ7B 2WJQA 4AKRB 2M07A 3AAEA 3BRZA 3LK3B 2KXPA 2R4OA 2XE1A 4N58A 3WI4A 2R88A 3LK2B 1ZHYA 1IZNB 3BRYA 4D5UA 3SYBA 4N75A 1MM5A 4KR8A 4FESA 4CTDA 4GCPA 4JFBA 3LK42 1H6S1 3NJTA 3T0SA 3VZTX 1Q9GA 3A0HO 4XNLA 2KZ7A 1THQA 4AKRA 4UB8O 2Y0HA 4FSOA 2F1VA 3C5OA 3LK2A 5G3AA 1QJ8A 4AUIA 1ZHWA 3AA1A 4QQ1A 4AYNA 2JQYA 2J1NA 4D64A 3AAAB 3PRNA 5ADXK 7PRNA 2XE2A 4N59A 4XNKA 4AZLA 4PR7A 2YNKA 1S5LO 4FRXA 2J4UP 5IYUA 1G90A 5G39A 4O49A 2O4VA 4C69X 3GP6A 4N74A 3VY8X 3VY9X 3DZMA 3PGRA 3QRCA 4U9CA 4FRTA 3TZGA 1OPFA 3UPGA 2Y0LA 4E1TA 4FMSA 1PRNA 2ODJA 3AA7B 4FUVA 6PRNA 2R8AA 1GFQA 1P4TA 3FYXA 2LHFA 3G7GA 2QTKA 4FZMA 2W81C 1Q9FA 1ZHXA 1HXUA 1ZHTA 2Y0KA 4UB6O 3JCUO 1MPFA 3NSGA 3SY9A 4FQEA 3LK3A 3SYSA 4BUMX 1BH3A 2F1CX 4RLCA 4RL9A 5DL7A 3VE2A 2KC0A 1IZNA 2R89A 5ADXL 3KZIO 2FGQX 4FOZA 4FT6A 1QJPA 3DA4A 4JCHA 2R4LA 3JTYA 4FZNA 5AFUK 1HXTA 2X27X 2R4PA 2YPVA 1OSMA 3KVDD 2XTRA 3POQA 3AA0B 1YS5A 4O3YA 3AA6B 3V8UA 4G76A 4F4BA 3RBHA 5KAFO 2XG6A 2ZFGA 2MHLA 3PORA 3UAQA 2XTQA 4AYEC 3O0EA 4AYDC 4C4VB 3SZDA 4G75A 4C00A 3PQSA 4LSHA 3AAAA 4O3WA 4RLBA 2Y2XA 5DL5A 5G26A 5G38A 3WI5A 4AFKA 2KDYA 5KAIO 4GF4A 4D65A 3T20A 3HOLA 5GTIO 5B66O 3DA3A 2F1TA 3AA6A 4IL6O 3AAEB 2KXPB 2LFUA 3K19A 5D5DA 4GHBA 4PJ0O 2WVPA 2XE5A 4C4VA 4PUXA 2N2LA 2IWWA 2R4NA 3A0BO 3SZVA 3WU2O 3EMNX 4FSPA 3AA7A 3SY7A 2M06A 1E54A 3VE1A 5PRNA 3BS0A 4B61A 1BT9A 1T1LA 2IWVA 1GFNA 4LSEA 3HWBA 3PF1A 4FZLA 2ERVA 1HXXA 2K4TA 4O3ZA 5FVNA 4AKMA 2XE3A 4AYMC
chains in the Genus database with same CATH topology
3POUA 3T24A 5DL8A 3AA1B 4KRAA 4RJWA 1QJ9A 4GCSA 4AYID 8PRNA 5DL6A 4RJXA 2FGRA 3HW9A 3UU2A 4GCQA 4O4UA 4LSIA 2OMFA 4E1SA 2PRNA 1ORMA 1GFOA 5T5FA 3AA0A 3QRAA 3VZWX 1GFMA 1MM4A 3POXA 4LSFA 3LK41 3PQUA 4O3XB 2MNHA 3HOEA 2PORA 1ZHZA 2N2MA 4Z3TA 5GV0A 5JDPA 5EE2A 2K0LA 2W80C 5AFUL 1GFPA 1BXWA 4KR4A 2ZLDA 4O4XA 2Y7SA 3A2SX 2JMMA 2GE4A 2XMXA 3VZUX 1PHOA 2KZ7B 4AKRB 2M07A 3AAEA 3LK3B 2KXPA 2XE1A 4N58A 3WI4A 3LK2B 1ZHYA 1IZNB 4D5UA 3SYBA 1MM5A 4KR8A 4FESA 4GCPA 4JFBA 3LK42 1H6S1 3T0SA 3VZTX 1Q9GA 4XNLA 2KZ7A 1THQA 4AKRA 2Y0HA 4FSOA 2F1VA 3C5OA 3LK2A 1QJ8A 4AUIA 1ZHWA 3AA1A 4QQ1A 4AYNA 2J1NA 3AAAB 3PRNA 5ADXK 7PRNA 2XE2A 4N59A 4XNKA 4AZLA 2YNKA 4FRXA 2J4UP 5IYUA 1G90A 4O49A 2O4VA 4C69X 3GP6A 3VY8X 3VY9X 3QRCA 4U9CA 4FRTA 3TZGA 1OPFA 3UPGA 2Y0LA 4E1TA 4FMSA 1PRNA 2ODJA 3AA7B 4FUVA 6PRNA 3FYXA 1GFQA 1P4TA 2LHFA 3G7GA 2QTKA 4FZMA 2W81C 1Q9FA 1ZHXA 1HXUA 1ZHTA 2Y0KA 1MPFA 3NSGA 3SY9A 3SYSA 3LK3A 4BUMX 1BH3A 4RLCA 4RL9A 5DL7A 3VE2A 2KC0A 1IZNA 5ADXL 2FGQX 4FOZA 4FT6A 1QJPA 3DA4A 4JCHA 3JTYA 4FZNA 5AFUK 1HXTA 2X27X 2YPVA 1OSMA 3KVDD 2XTRA 3POQA 3AA0B 1YS5A 4O3YA 3AA6B 3V8UA 4G76A 4F4BA 3RBHA 2XG6A 2ZFGA 2MHLA 3PORA 3UAQA 2XTQA 4AYEC 3O0EA 4AYDC 3SZDA 4G75A 3PQSA 4LSHA 3AAAA 4O3WA 4RLBA 2Y2XA 5DL5A 5G26A 3WI5A 4AFKA 4D64A 2KDYA 4GF4A 4D65A 3T20A 3HOLA 3DA3A 2F1TA 3AA6A 3AAEB 2KXPB 2LFUA 3K19A 5D5DA 4GHBA 2XE5A 4PUXA 2N2LA 3SZVA 3EMNX 4FSPA 3AA7A 3SY7A 2M06A 1E54A 3VE1A 5PRNA 4B61A 1BT9A 4LSEA 1GFNA 3HWBA 4FZLA 2ERVA 1HXXA 2K4TA 4O3ZA 5FVNA 4AKMA 2XE3A 4AYMC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QRC A;  2MHL A;  1QJ9 A;  1MM5 A;  1P4T A;  2LHF A;  3G7G A;  1Q9F A;  1ORM A;  1Q9G A;  2F1T A;  1THQ A;  3QRA A;  1MM4 A;  2F1V A;  3C5O A;  1QJ8 A;  2MNH A;  4RLC A;  2N2M A;  4PUX A;  2N2L A;  2K0L A;  1QJP A;  2M06 A;  1BXW A;  2X27 X;  2ERV A;  2JMM A;  1G90 A;  2GE4 A;  3GP6 A;  2M07 A; 
#chains in the Genus database with same CATH topology
 3POU A;  3T24 A;  5DL8 A;  3AA1 B;  4KRA A;  4RJW A;  1QJ9 A;  4GCS A;  1T16 A;  4AYI D;  8PRN A;  5DL6 A;  4RJX A;  5TIS O;  5GV0 A;  2FGR A;  3HW9 A;  4K3C A;  3UU2 A;  5H2F O;  4GCQ A;  4O4U A;  2WJR A;  4LSI A;  2OMF A;  4E1S A;  5B5E O;  2PRN A;  1ORM A;  2AXT O;  1GFO A;  3PGU A;  5T5F A;  3AA0 A;  3QRA A;  3VZW X;  1GFM A;  1MM4 A;  3POX A;  4LSF A;  3LK4 1;  3PQU A;  4O3X B;  2MNH A;  3HOE A;  2POR A;  1ZHZ A;  2N2M A;  4Z3T A;  5GTH O;  5JDP A;  5EE2 A;  2K0L A;  2W80 C;  3PGS A;  1GFP A;  3DWN A;  1BXW A;  5E79 O;  5AFU L;  4KR4 A;  2ZLD A;  3DWO X;  4O4X A;  2Y7S A;  4K3B A;  3A2S X;  2JMM A;  2GE4 A;  2XMX A;  3VZU X;  1PHO A;  2X9K A;  2KZ7 B;  2WJQ A;  4AKR B;  2M07 A;  3AAE A;  3BRZ A;  3LK3 B;  2KXP A;  2R4O A;  2XE1 A;  4N58 A;  3WI4 A;  2R88 A;  3LK2 B;  1ZHY A;  1IZN B;  3BRY A;  4D5U A;  3SYB A;  4N75 A;  1MM5 A;  4KR8 A;  4FES A;  4CTD A;  4GCP A;  4JFB A;  3LK4 2;  1H6S 1;  3NJT A;  3T0S A;  3VZT X;  1Q9G A;  3A0H O;  4XNL A;  2KZ7 A;  1THQ A;  4AKR A;  4UB8 O;  2Y0H A;  4FSO A;  2F1V A;  3C5O A;  3LK2 A;  5G3A A;  1QJ8 A;  4AUI A;  1ZHW A;  3AA1 A;  4QQ1 A;  4AYN A;  2JQY A;  2J1N A;  4D64 A;  3AAA B;  3PRN A;  5ADX K;  7PRN A;  2XE2 A;  4N59 A;  4XNK A;  4AZL A;  4PR7 A;  2YNK A;  1S5L O;  4FRX A;  2J4U P;  5IYU A;  1G90 A;  5G39 A;  4O49 A;  2O4V A;  4C69 X;  3GP6 A;  4N74 A;  3VY8 X;  3VY9 X;  3DZM A;  3PGR A;  3QRC A;  4U9C A;  4FRT A;  3TZG A;  1OPF A;  3UPG A;  2Y0L A;  4E1T A;  4FMS A;  1PRN A;  2ODJ A;  3AA7 B;  4FUV A;  6PRN A;  2R8A A;  1GFQ A;  1P4T A;  3FYX A;  2LHF A;  3G7G A;  2QTK A;  4FZM A;  2W81 C;  1Q9F A;  1ZHX A;  1HXU A;  1ZHT A;  2Y0K A;  4UB6 O;  3JCU O;  1MPF A;  3NSG A;  3SY9 A;  4FQE A;  3LK3 A;  3SYS A;  4BUM X;  1BH3 A;  2F1C X;  4RLC A;  4RL9 A;  5DL7 A;  3VE2 A;  2KC0 A;  1IZN A;  2R89 A;  5ADX L;  3KZI O;  2FGQ X;  4FOZ A;  4FT6 A;  1QJP A;  3DA4 A;  4JCH A;  2R4L A;  3JTY A;  4FZN A;  5AFU K;  1HXT A;  2X27 X;  2R4P A;  2YPV A;  1OSM A;  3KVD D;  2XTR A;  3POQ A;  3AA0 B;  1YS5 A;  4O3Y A;  3AA6 B;  3V8U A;  4G76 A;  4F4B A;  3RBH A;  5KAF O;  2XG6 A;  2ZFG A;  2MHL A;  3POR A;  3UAQ A;  2XTQ A;  4AYE C;  3O0E A;  4AYD C;  4C4V B;  3SZD A;  4G75 A;  4C00 A;  3PQS A;  4LSH A;  3AAA A;  4O3W A;  4RLB A;  2Y2X A;  5DL5 A;  5G26 A;  5G38 A;  3WI5 A;  4AFK A;  2KDY A;  5KAI O;  4GF4 A;  4D65 A;  3T20 A;  3HOL A;  5GTI O;  5B66 O;  3DA3 A;  2F1T A;  3AA6 A;  4IL6 O;  3AAE B;  2KXP B;  2LFU A;  3K19 A;  5D5D A;  4GHB A;  4PJ0 O;  2WVP A;  2XE5 A;  4C4V A;  4PUX A;  2N2L A;  2IWW A;  2R4N A;  3A0B O;  3SZV A;  3WU2 O;  3EMN X;  4FSP A;  3AA7 A;  3SY7 A;  2M06 A;  1E54 A;  3VE1 A;  5PRN A;  3BS0 A;  4B61 A;  1BT9 A;  1T1L A;  2IWV A;  1GFN A;  4LSE A;  3HWB A;  3PF1 A;  4FZL A;  2ERV A;  1HXX A;  2K4T A;  4O3Z A;  5FVN A;  4AKM A;  2XE3 A;  4AYM C; 
#chains in the Genus database with same CATH homology
 3POU A;  3T24 A;  5DL8 A;  3AA1 B;  4KRA A;  4RJW A;  1QJ9 A;  4GCS A;  4AYI D;  8PRN A;  5DL6 A;  4RJX A;  2FGR A;  3HW9 A;  3UU2 A;  4GCQ A;  4O4U A;  4LSI A;  2OMF A;  4E1S A;  2PRN A;  1ORM A;  1GFO A;  5T5F A;  3AA0 A;  3QRA A;  3VZW X;  1GFM A;  1MM4 A;  3POX A;  4LSF A;  3LK4 1;  3PQU A;  4O3X B;  2MNH A;  3HOE A;  2POR A;  1ZHZ A;  2N2M A;  4Z3T A;  5GV0 A;  5JDP A;  5EE2 A;  2K0L A;  2W80 C;  5AFU L;  1GFP A;  1BXW A;  4KR4 A;  2ZLD A;  4O4X A;  2Y7S A;  3A2S X;  2JMM A;  2GE4 A;  2XMX A;  3VZU X;  1PHO A;  2KZ7 B;  4AKR B;  2M07 A;  3AAE A;  3LK3 B;  2KXP A;  2XE1 A;  4N58 A;  3WI4 A;  3LK2 B;  1ZHY A;  1IZN B;  4D5U A;  3SYB A;  1MM5 A;  4KR8 A;  4FES A;  4GCP A;  4JFB A;  3LK4 2;  1H6S 1;  3T0S A;  3VZT X;  1Q9G A;  4XNL A;  2KZ7 A;  1THQ A;  4AKR A;  2Y0H A;  4FSO A;  2F1V A;  3C5O A;  3LK2 A;  1QJ8 A;  4AUI A;  1ZHW A;  3AA1 A;  4QQ1 A;  4AYN A;  2J1N A;  3AAA B;  3PRN A;  5ADX K;  7PRN A;  2XE2 A;  4N59 A;  4XNK A;  4AZL A;  2YNK A;  4FRX A;  2J4U P;  5IYU A;  1G90 A;  4O49 A;  2O4V A;  4C69 X;  3GP6 A;  3VY8 X;  3VY9 X;  3QRC A;  4U9C A;  4FRT A;  3TZG A;  1OPF A;  3UPG A;  2Y0L A;  4E1T A;  4FMS A;  1PRN A;  2ODJ A;  3AA7 B;  4FUV A;  6PRN A;  3FYX A;  1GFQ A;  1P4T A;  2LHF A;  3G7G A;  2QTK A;  4FZM A;  2W81 C;  1Q9F A;  1ZHX A;  1HXU A;  1ZHT A;  2Y0K A;  1MPF A;  3NSG A;  3SY9 A;  3SYS A;  3LK3 A;  4BUM X;  1BH3 A;  4RLC A;  4RL9 A;  5DL7 A;  3VE2 A;  2KC0 A;  1IZN A;  5ADX L;  2FGQ X;  4FOZ A;  4FT6 A;  1QJP A;  3DA4 A;  4JCH A;  3JTY A;  4FZN A;  5AFU K;  1HXT A;  2X27 X;  2YPV A;  1OSM A;  3KVD D;  2XTR A;  3POQ A;  3AA0 B;  1YS5 A;  4O3Y A;  3AA6 B;  3V8U A;  4G76 A;  4F4B A;  3RBH A;  2XG6 A;  2ZFG A;  2MHL A;  3POR A;  3UAQ A;  2XTQ A;  4AYE C;  3O0E A;  4AYD C;  3SZD A;  4G75 A;  3PQS A;  4LSH A;  3AAA A;  4O3W A;  4RLB A;  2Y2X A;  5DL5 A;  5G26 A;  3WI5 A;  4AFK A;  4D64 A;  2KDY A;  4GF4 A;  4D65 A;  3T20 A;  3HOL A;  3DA3 A;  2F1T A;  3AA6 A;  3AAE B;  2KXP B;  2LFU A;  3K19 A;  5D5D A;  4GHB A;  2XE5 A;  4PUX A;  2N2L A;  3SZV A;  3EMN X;  4FSP A;  3AA7 A;  3SY7 A;  2M06 A;  1E54 A;  3VE1 A;  5PRN A;  4B61 A;  1BT9 A;  4LSE A;  1GFN A;  3HWB A;  4FZL A;  2ERV A;  1HXX A;  2K4T A;  4O3Z A;  5FVN A;  4AKM A;  2XE3 A;  4AYM C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...