2X3HA

Coliphage k5a lyase
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
sequence length
498
structure length
498
Chain Sequence
PKTEGILHKGQSLYEYLDARVLTSKPFGAAGDATTDDTEVIAASLNSQKAVTISDGVFSSSGINSNYCNLDGRGSGVLSHRSSTGNYLVFNNPRTGRLSNITVESNKATDTTQGQQVSLAGGSDVTVSDVNFSNVKGTGFSLIAYPNDAPPDGLMIKGIRGSYSGYATNKAAGCVLADSSVNSLIDNVIAKNYPQFGAVELKGTASYNIVSNVIGADCQHVTYNGTEGPIAPSNNLIKGVMANNPKYAAVVAGKGSTNLISDVLVDYSTSDARQAHGVTVEGSDNVINNVLMSGCDGTNSLGQRQTATIARFIGTANNNYASVFPSYSATGVITFESGSTRNFVEVKHPGRRNDLLSSASTIDGAATIDGTSNSNVVHAPALGQYIGSMSGRFEWRIKSMSLPSGVLTSADKYRMLGDGAVSLAVGGGTSSQVRLFTSDGTSRTVSLTNGNVRLSTSSTGYLQLGADAMTPDSTGTYALGSASRAWSGGFTQAAFTVT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords K5 LYASE
publication title The K5 Lyase Kfla Combines a Viral Tail Spike Structure with a Bacterial Polysaccharide Lyase Mechanism.
pubmed doi rcsb
source organism Enterobacteria phage k1-5
molecule tags Lyase
total genus 163
structure length 498
sequence length 498
chains with identical sequence B, C
ec nomenclature ec 4.2.2.7: Heparin lyase.
pdb deposition date 2010-02-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 2x3hA00
4HWVA 1OOCA 1JTAA 2NT9A 4OJLA 1BHEA 2O17A 3VMVA 1IDKA 4XMYA 2Z8GA 2NSPA 4XN0A 1RMGA 2QY1A 2PYHA 1QJVA 2VJIA 4XONA 4EW9A 1PXZA 2NSTA 3EQNA 4OJ6A 1O8GA 1O8MA 2QX3A 4W8QA 1BN8A 4XKVA 3VSUA 2NZMA 3EQOA 3T9GA 5C1CA 1QCXA 2EWEA 1PE9A 3B90A 2X85A 3B4NA 3ZPPA 4Z03A 2BSPA 1H80A 2NT6A 2X6YA 1DBOA 3LMWA 4MR0A 1NHCA 3GQ8A 1KCCA 2INVA 3GQAA 3B8YA 4YZQA 2INUA 1O8FA 4XLFA 4XNFA 1IB4A 1K5CA 2NTBA 4XKWA 4OZZA 4OJOA 2UVEA 4PMHA 1O8HA 1WMRA 4YZAA 1HG8A 1O8EA 4XOTA 5C1EA 1OFLA 2O0WA 1DBGA 4W8SA 1GQ8A 1O8KA 4MXNA 2PECA 4YZ0A 1O8IA 3GRHA 4YELA 1OGOX 1PLUA 3FY3A 4XLAA 3VSVA 1X0CA 4OJPA 4NK8A 2O1DA 1AIRA 2NTPA 4C2LA 4Z06A 2X3HA 3WWGA 1OGMX 4U49A 4OJ5A 3VMWA 4AVZA 4XL9A 4XR6A 1O8LA 1JRGA 4XLCA 4YZXA 3JURA 3ZSCA 1IDJA 1VBLA 4URRA 2X6XA 5AMVA 4W8RA 4XLHA 4XQFA 2QXZA 1KCDA 2VBEA 4XLEA 4NK6A 3GQ7A 2VBMA 4XOPA 2IQ7A 2ODLA 1XG2A 2VBKA 3KRGA 1RWRA 4W8TA 4XM3A 4YEJA 1KTWA 2NTQA 4XORA 2VJJA 2X6WA 1O8JA 2PYGA 1CZFA 1O8DA 2O04A 2O0VA 1EE6A 4XN3A 3VSTA 2UVFA 1IA5A 1RU4A 3GQ9A 3UW0A 4OZYA 4I84A 1OFMA 1O88A 4U4BA 3SUCA 4Z05A
chains in the Genus database with same CATH superfamily
1QRCA 4HWVA 1OOCA 1JTAA 2NT9A 2G0YA 4OJLA 1OFDA 4YC5A 2B0RA 1BHEA 2O17A 4KH3A 1IDKA 3VMVA 4XMYA 5DNSA 2Z8GA 1QRBA 2XTYA 2NSPA 4XN0A 3AK5A 3H09A 1RMGA 2VFPA 2QY1A 2PYHA 1QJVA 2VJIA 4OPWA 4XONA 1QA2A 2XTXA 3TH0A 4EW9A 4YEIA 1K8FA 1LM1A 1PXZA 2XTWA 1OFEA 2NSTA 1EZGA 3EQNA 4OM9A 4OJ6A 1O8GA 1O8MA 2QX3A 4W8QA 1BN8A 3DU1X 4XKVA 3VSUA 1K4ZA 2NZMA 3EQOA 3T9GA 5C1CA 1QCXA 2EWEA 1PE9A 3B90A 2QYUA 1TYUA 2X85A 2VFOA 4YCQA 3B4NA 3ZPPA 4Z03A 1EA0A 2BSPA 1H80A 2NT6A 2X6YA 1DBOA 2VFQA 3LMWA 4MR0A 3GQ8A 1KCCA 1NHCA 2INVA 1QQ1A 1DABA 3GQAA 3B8YA 2XT4A 2INUA 4YZQA 3SQVA 2V5IA 1O8FA 4XLFA 4XNFA 3NAWA 1IB4A 1K5CA 1LLZA 2NTBA 4XKWA 3SZEA 4OZZA 4OJOA 2UVEA 2BM4A 4PMHA 1O8HA 1WMRA 4YZAA 3BH7B 1HG8A 1O8EA 4XOTA 2W7ZA 1L1IA 4V02C 4YDTA 1OFLA 5C1EA 2O0WA 1DBGA 4W8SA 1GQ8A 1O8KA 4MXNA 2PECA 4YZ0A 1O8IA 3GRHA 2VFNA 2XC1A 4YELA 1OGOX 1PLUA 1TSPA 1KQ5A 3FY3A 4XLAA 3VSVA 4YFOA 1X0CA 3PETA 3P4GA 4OJPA 2J8IA 2XT2A 4NK8A 1QA1A 2O1DA 1AIRA 2NTPA 4C2LA 3N90A 4Z06A 1TYVA 2X3HA 3WWGA 1OGMX 1LLWA 4U49A 4OJ5A 3VMWA 4AVZA 4XL9A 4XR6A 1O8LA 1JRGA 3JX8A 4XLCA 4YZXA 3JURA 3ZSCA 1IDJA 1VBLA 2YUHA 4URRA 2X6XA 1TYXA 3ML3A 2VFMA 4W8RA 4XLHA 5AMVA 2QZAA 4XQFA 2QXZA 1KCDA 2VBEA 4XLEA 4NK6A 3SY2A 3SYJA 2BM5A 3LYCA 3GQ7A 2VBMA 4XOPA 5JMCB 2IQ7A 2ODLA 3LJYA 1XG2A 2VBKA 3KRGA 1RWRA 4W8TA 4XM3A 4YEJA 3N6ZA 4JRAC 3RIQA 1KTWA 2NTQA 4XORA 2VJJA 2X6WA 1O8JA 2BX6A 1QA3A 2PYGA 1CZFA 1O8DA 2O04A 2O0VA 1EE6A 3NB2A 4XN3A 3VSTA 2J8KA 2UVFA 3PSSA 1IA5A 1HF2A 1RU4A 3GQ9A 3UW0A 1TYWA 2BM7A 2F3LA 2IOUG 2O6WA 1WXRA 3PSZA 4OZYA 4I84A 1OFMA 1O88A 4U4BA 3SUCA 5JLVC 1CLWA 4Z05A 3BH6B 2BM6A
chains in the Genus database with same CATH topology
4HWVA 1OOCA 1JTAA 2NT9A 4OJLA 1BHEA 2O17A 3VMVA 1IDKA 4XMYA 2Z8GA 2NSPA 4XN0A 1RMGA 2QY1A 2PYHA 1QJVA 2VJIA 4XONA 4EW9A 1PXZA 2NSTA 3EQNA 4OJ6A 1O8GA 1O8MA 2QX3A 4W8QA 1BN8A 4XKVA 3VSUA 2NZMA 3EQOA 3T9GA 5C1CA 1QCXA 2EWEA 1PE9A 3B90A 2X85A 3B4NA 3ZPPA 4Z03A 2BSPA 1H80A 2NT6A 2X6YA 1DBOA 3LMWA 4MR0A 1NHCA 3GQ8A 1KCCA 2INVA 3GQAA 3B8YA 4YZQA 2INUA 1O8FA 4XLFA 4XNFA 1IB4A 1K5CA 2NTBA 4XKWA 4OZZA 4OJOA 2UVEA 4PMHA 1O8HA 1WMRA 4YZAA 1HG8A 1O8EA 4XOTA 5C1EA 1OFLA 2O0WA 1DBGA 4W8SA 1GQ8A 1O8KA 4MXNA 2PECA 4YZ0A 1O8IA 3GRHA 4YELA 1OGOX 1PLUA 3FY3A 4XLAA 3VSVA 1X0CA 4OJPA 4NK8A 2O1DA 1AIRA 2NTPA 4C2LA 4Z06A 2X3HA 3WWGA 1OGMX 4U49A 4OJ5A 3VMWA 4AVZA 4XL9A 4XR6A 1O8LA 1JRGA 4XLCA 4YZXA 3JURA 3ZSCA 1IDJA 1VBLA 4URRA 2X6XA 5AMVA 4W8RA 4XLHA 4XQFA 2QXZA 1KCDA 2VBEA 4XLEA 4NK6A 3GQ7A 2VBMA 4XOPA 2IQ7A 2ODLA 1XG2A 2VBKA 3KRGA 1RWRA 4W8TA 4XM3A 4YEJA 1KTWA 2NTQA 4XORA 2VJJA 2X6WA 1O8JA 2PYGA 1CZFA 1O8DA 2O04A 2O0VA 1EE6A 4XN3A 3VSTA 2UVFA 1IA5A 1RU4A 3GQ9A 3UW0A 4OZYA 4I84A 1OFMA 1O88A 4U4BA 3SUCA 4Z05A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HWV A;  1OOC A;  1JTA A;  2NT9 A;  4OJL A;  1BHE A;  2O17 A;  3VMV A;  1IDK A;  4XMY A;  2Z8G A;  2NSP A;  4XN0 A;  1RMG A;  2QY1 A;  2PYH A;  1QJV A;  2VJI A;  4XON A;  4EW9 A;  1PXZ A;  2NST A;  3EQN A;  4OJ6 A;  1O8G A;  1O8M A;  2QX3 A;  4W8Q A;  1BN8 A;  4XKV A;  3VSU A;  2NZM A;  3EQO A;  3T9G A;  5C1C A;  1QCX A;  2EWE A;  1PE9 A;  3B90 A;  2X85 A;  3B4N A;  3ZPP A;  4Z03 A;  2BSP A;  1H80 A;  2NT6 A;  2X6Y A;  1DBO A;  3LMW A;  4MR0 A;  1NHC A;  3GQ8 A;  1KCC A;  2INV A;  3GQA A;  3B8Y A;  4YZQ A;  2INU A;  1O8F A;  4XLF A;  4XNF A;  1IB4 A;  1K5C A;  2NTB A;  4XKW A;  4OZZ A;  4OJO A;  2UVE A;  4PMH A;  1O8H A;  1WMR A;  4YZA A;  1HG8 A;  1O8E A;  4XOT A;  5C1E A;  1OFL A;  2O0W A;  1DBG A;  4W8S A;  1GQ8 A;  1O8K A;  4MXN A;  2PEC A;  4YZ0 A;  1O8I A;  3GRH A;  4YEL A;  1OGO X;  1PLU A;  3FY3 A;  4XLA A;  3VSV A;  1X0C A;  4OJP A;  4NK8 A;  2O1D A;  1AIR A;  2NTP A;  4C2L A;  4Z06 A;  2X3H A;  3WWG A;  1OGM X;  4U49 A;  4OJ5 A;  3VMW A;  4AVZ A;  4XL9 A;  4XR6 A;  1O8L A;  1JRG A;  4XLC A;  4YZX A;  3JUR A;  3ZSC A;  1IDJ A;  1VBL A;  4URR A;  2X6X A;  5AMV A;  4W8R A;  4XLH A;  4XQF A;  2QXZ A;  1KCD A;  2VBE A;  4XLE A;  4NK6 A;  3GQ7 A;  2VBM A;  4XOP A;  2IQ7 A;  2ODL A;  1XG2 A;  2VBK A;  3KRG A;  1RWR A;  4W8T A;  4XM3 A;  4YEJ A;  1KTW A;  2NTQ A;  4XOR A;  2VJJ A;  2X6W A;  1O8J A;  2PYG A;  1CZF A;  1O8D A;  2O04 A;  2O0V A;  1EE6 A;  4XN3 A;  3VST A;  2UVF A;  1IA5 A;  1RU4 A;  3GQ9 A;  3UW0 A;  4OZY A;  4I84 A;  1OFM A;  1O88 A;  4U4B A;  3SUC A;  4Z05 A; 
#chains in the Genus database with same CATH topology
 1QRC A;  4HWV A;  1OOC A;  1JTA A;  2NT9 A;  2G0Y A;  4OJL A;  1OFD A;  4YC5 A;  2B0R A;  1BHE A;  2O17 A;  4KH3 A;  1IDK A;  3VMV A;  4XMY A;  5DNS A;  2Z8G A;  1QRB A;  2XTY A;  2NSP A;  4XN0 A;  3AK5 A;  3H09 A;  1RMG A;  2VFP A;  2QY1 A;  2PYH A;  1QJV A;  2VJI A;  4OPW A;  4XON A;  1QA2 A;  2XTX A;  3TH0 A;  4EW9 A;  4YEI A;  1K8F A;  1LM1 A;  1PXZ A;  2XTW A;  1OFE A;  2NST A;  1EZG A;  3EQN A;  4OM9 A;  4OJ6 A;  1O8G A;  1O8M A;  2QX3 A;  4W8Q A;  1BN8 A;  3DU1 X;  4XKV A;  3VSU A;  1K4Z A;  2NZM A;  3EQO A;  3T9G A;  5C1C A;  1QCX A;  2EWE A;  1PE9 A;  3B90 A;  2QYU A;  1TYU A;  2X85 A;  2VFO A;  4YCQ A;  3B4N A;  3ZPP A;  4Z03 A;  1EA0 A;  2BSP A;  1H80 A;  2NT6 A;  2X6Y A;  1DBO A;  2VFQ A;  3LMW A;  4MR0 A;  3GQ8 A;  1KCC A;  1NHC A;  2INV A;  1QQ1 A;  1DAB A;  3GQA A;  3B8Y A;  2XT4 A;  2INU A;  4YZQ A;  3SQV A;  2V5I A;  1O8F A;  4XLF A;  4XNF A;  3NAW A;  1IB4 A;  1K5C A;  1LLZ A;  2NTB A;  4XKW A;  3SZE A;  4OZZ A;  4OJO A;  2UVE A;  2BM4 A;  4PMH A;  1O8H A;  1WMR A;  4YZA A;  3BH7 B;  1HG8 A;  1O8E A;  4XOT A;  2W7Z A;  1L1I A;  4V02 C;  4YDT A;  1OFL A;  5C1E A;  2O0W A;  1DBG A;  4W8S A;  1GQ8 A;  1O8K A;  4MXN A;  2PEC A;  4YZ0 A;  1O8I A;  3GRH A;  2VFN A;  2XC1 A;  4YEL A;  1OGO X;  1PLU A;  1TSP A;  1KQ5 A;  3FY3 A;  4XLA A;  3VSV A;  4YFO A;  1X0C A;  3PET A;  3P4G A;  4OJP A;  2J8I A;  2XT2 A;  4NK8 A;  1QA1 A;  2O1D A;  1AIR A;  2NTP A;  4C2L A;  3N90 A;  4Z06 A;  1TYV A;  2X3H A;  3WWG A;  1OGM X;  1LLW A;  4U49 A;  4OJ5 A;  3VMW A;  4AVZ A;  4XL9 A;  4XR6 A;  1O8L A;  1JRG A;  3JX8 A;  4XLC A;  4YZX A;  3JUR A;  3ZSC A;  1IDJ A;  1VBL A;  2YUH A;  4URR A;  2X6X A;  1TYX A;  3ML3 A;  2VFM A;  4W8R A;  4XLH A;  5AMV A;  2QZA A;  4XQF A;  2QXZ A;  1KCD A;  2VBE A;  4XLE A;  4NK6 A;  3SY2 A;  3SYJ A;  2BM5 A;  3LYC A;  3GQ7 A;  2VBM A;  4XOP A;  5JMC B;  2IQ7 A;  2ODL A;  3LJY A;  1XG2 A;  2VBK A;  3KRG A;  1RWR A;  4W8T A;  4XM3 A;  4YEJ A;  3N6Z A;  4JRA C;  3RIQ A;  1KTW A;  2NTQ A;  4XOR A;  2VJJ A;  2X6W A;  1O8J A;  2BX6 A;  1QA3 A;  2PYG A;  1CZF A;  1O8D A;  2O04 A;  2O0V A;  1EE6 A;  3NB2 A;  4XN3 A;  3VST A;  2J8K A;  2UVF A;  3PSS A;  1IA5 A;  1HF2 A;  1RU4 A;  3GQ9 A;  3UW0 A;  1TYW A;  2BM7 A;  2F3L A;  2IOU G;  2O6W A;  1WXR A;  3PSZ A;  4OZY A;  4I84 A;  1OFM A;  1O88 A;  4U4B A;  3SUC A;  5JLV C;  1CLW A;  4Z05 A;  3BH6 B;  2BM6 A; 
#chains in the Genus database with same CATH homology
 4HWV A;  1OOC A;  1JTA A;  2NT9 A;  4OJL A;  1BHE A;  2O17 A;  3VMV A;  1IDK A;  4XMY A;  2Z8G A;  2NSP A;  4XN0 A;  1RMG A;  2QY1 A;  2PYH A;  1QJV A;  2VJI A;  4XON A;  4EW9 A;  1PXZ A;  2NST A;  3EQN A;  4OJ6 A;  1O8G A;  1O8M A;  2QX3 A;  4W8Q A;  1BN8 A;  4XKV A;  3VSU A;  2NZM A;  3EQO A;  3T9G A;  5C1C A;  1QCX A;  2EWE A;  1PE9 A;  3B90 A;  2X85 A;  3B4N A;  3ZPP A;  4Z03 A;  2BSP A;  1H80 A;  2NT6 A;  2X6Y A;  1DBO A;  3LMW A;  4MR0 A;  1NHC A;  3GQ8 A;  1KCC A;  2INV A;  3GQA A;  3B8Y A;  4YZQ A;  2INU A;  1O8F A;  4XLF A;  4XNF A;  1IB4 A;  1K5C A;  2NTB A;  4XKW A;  4OZZ A;  4OJO A;  2UVE A;  4PMH A;  1O8H A;  1WMR A;  4YZA A;  1HG8 A;  1O8E A;  4XOT A;  5C1E A;  1OFL A;  2O0W A;  1DBG A;  4W8S A;  1GQ8 A;  1O8K A;  4MXN A;  2PEC A;  4YZ0 A;  1O8I A;  3GRH A;  4YEL A;  1OGO X;  1PLU A;  3FY3 A;  4XLA A;  3VSV A;  1X0C A;  4OJP A;  4NK8 A;  2O1D A;  1AIR A;  2NTP A;  4C2L A;  4Z06 A;  2X3H A;  3WWG A;  1OGM X;  4U49 A;  4OJ5 A;  3VMW A;  4AVZ A;  4XL9 A;  4XR6 A;  1O8L A;  1JRG A;  4XLC A;  4YZX A;  3JUR A;  3ZSC A;  1IDJ A;  1VBL A;  4URR A;  2X6X A;  5AMV A;  4W8R A;  4XLH A;  4XQF A;  2QXZ A;  1KCD A;  2VBE A;  4XLE A;  4NK6 A;  3GQ7 A;  2VBM A;  4XOP A;  2IQ7 A;  2ODL A;  1XG2 A;  2VBK A;  3KRG A;  1RWR A;  4W8T A;  4XM3 A;  4YEJ A;  1KTW A;  2NTQ A;  4XOR A;  2VJJ A;  2X6W A;  1O8J A;  2PYG A;  1CZF A;  1O8D A;  2O04 A;  2O0V A;  1EE6 A;  4XN3 A;  3VST A;  2UVF A;  1IA5 A;  1RU4 A;  3GQ9 A;  3UW0 A;  4OZY A;  4I84 A;  1OFM A;  1O88 A;  4U4B A;  3SUC A;  4Z05 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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