2X5TA

Crystal structure of orf131 from sulfolobus islandicus rudivirus 1
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
94
structure length
93
Chain Sequence
ASLKEIIDELGKQAKEQNKIASRILKIKGIKRIVVQLNAVPQDKIRYSLTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYVKFTP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords ORF 131
publication title The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
pubmed doi rcsb
source organism Sulfolobus islandicus rudivirus 1
total genus 21
structure length 93
sequence length 94
ec nomenclature
pdb deposition date 2010-02-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.720.60 Alpha Beta 2-Layer Sandwich Signal recognition particle alu RNA binding heterodimer, srp9/1 Signal recognition particle alu RNA binding heterodimer, srp9/1 2x5tA00
2X5TA 2X5GA 2X5HA
chains in the Genus database with same CATH superfamily
4GZ6A 2FJAB 4GYYA 4XI9A 5C1DA 3OMSA 1QMOE 3TU3B 4UYKA 2W9JA 5AOXA 1E8OA 2FJBB 2X5TA 2X5HA 4N3BA 3VCXA 2FJDB 3GYXB 5BNWA 4GZ5A 1JNZB 1UJRA 4GYWA 4AY5A 3TAXA 3SK1A 4N3CA 3V3LA 3ITWA 4AY6A 1914A 1X4RA 1U7IA 2X5GA 2FFGA 2FJEB 4UYJB 2K4NA 2KJZA 4N3AA 4XIFA 4UYKB 3BT3A 3PE4A 4CDRA 2A90A 4UYJA 4GZ3A 2DK6A 3PE3A 2RSFA 5AOXB 4N39A 1JNRB 4AKXB 1E8OB
chains in the Genus database with same CATH topology
4GZ6A 2FJAB 4GYYA 4XI9A 5C1DA 3OMSA 1QMOE 3TU3B 4UYKA 2W9JA 5AOXA 1E8OA 2FJBB 2X5TA 2X5HA 4N3BA 3VCXA 2FJDB 3GYXB 5BNWA 4GZ5A 1JNZB 1UJRA 4GYWA 4AY5A 3TAXA 3SK1A 4N3CA 3V3LA 3ITWA 4AY6A 1914A 1X4RA 1U7IA 2X5GA 2FFGA 2FJEB 4UYJB 2K4NA 2KJZA 4N3AA 4XIFA 4UYKB 3BT3A 3PE4A 4CDRA 2A90A 4UYJA 4GZ3A 2DK6A 3PE3A 2RSFA 5AOXB 4N39A 1JNRB 4AKXB 1E8OB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X5T A;  2X5G A;  2X5H A; 
#chains in the Genus database with same CATH topology
 4GZ6 A;  2FJA B;  4GYY A;  4XI9 A;  5C1D A;  3OMS A;  1QMO E;  3TU3 B;  4UYK A;  2W9J A;  5AOX A;  1E8O A;  2FJB B;  2X5T A;  2X5H A;  4N3B A;  3VCX A;  2FJD B;  3GYX B;  5BNW A;  4GZ5 A;  1JNZ B;  1UJR A;  4GYW A;  4AY5 A;  3TAX A;  3SK1 A;  4N3C A;  3V3L A;  3ITW A;  4AY6 A;  1914 A;  1X4R A;  1U7I A;  2X5G A;  2FFG A;  2FJE B;  4UYJ B;  2K4N A;  2KJZ A;  4N3A A;  4XIF A;  4UYK B;  3BT3 A;  3PE4 A;  4CDR A;  2A90 A;  4UYJ A;  4GZ3 A;  2DK6 A;  3PE3 A;  2RSF A;  5AOX B;  4N39 A;  1JNR B;  4AKX B;  1E8O B; 
#chains in the Genus database with same CATH homology
 4GZ6 A;  2FJA B;  4GYY A;  4XI9 A;  5C1D A;  3OMS A;  1QMO E;  3TU3 B;  4UYK A;  2W9J A;  5AOX A;  1E8O A;  2FJB B;  2X5T A;  2X5H A;  4N3B A;  3VCX A;  2FJD B;  3GYX B;  5BNW A;  4GZ5 A;  1JNZ B;  1UJR A;  4GYW A;  4AY5 A;  3TAX A;  3SK1 A;  4N3C A;  3V3L A;  3ITW A;  4AY6 A;  1914 A;  1X4R A;  1U7I A;  2X5G A;  2FFG A;  2FJE B;  4UYJ B;  2K4N A;  2KJZ A;  4N3A A;  4XIF A;  4UYK B;  3BT3 A;  3PE4 A;  4CDR A;  2A90 A;  4UYJ A;  4GZ3 A;  2DK6 A;  3PE3 A;  2RSF A;  5AOX B;  4N39 A;  1JNR B;  4AKX B;  1E8O B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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