The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
43
|
sequence length |
245
|
structure length |
242
|
Chain Sequence |
KVFTMMYDGQDLTDYFLVQEVRGRSVYSIEMGKRTIAGVDGGVITTESLPARELEVDAIVFGDGTETDLRRRIEYLNFLLHRDTDVPITFSDEPSRTYYGRYEFATEGDGFHKVTLNFYCQDPLKYGPEVTTDVTTASTPVKNTGLAVTNPTIRCVFSTSATEYEMQLLDGSTVVKFLKVVYGFNTGDTLVIDCHERSVTLNGQDIMPALLIQSDWIQLKPQVNTYLKATQPSTIVFTEKFL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Bacteriophage Spp1 Distal Tail Protein (Gp 19.1): A Baseplate Hub Paradigm in Gram+ Infecting Phages.
pubmed doi rcsb |
| molecule keywords |
HYPOTHETICAL PROTEIN 19.1
|
| source organism |
Bacillus phage spp1
|
| molecule tags |
Viral protein
|
| total genus |
43
|
| structure length |
242
|
| sequence length |
245
|
| chains with identical sequence |
B, C
|
| ec nomenclature | |
| pdb deposition date | 2010-03-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05709 | Sipho_tail | Phage tail protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu); domain 3 | Elongation Factor Tu (Ef-tu); domain 3 | ||
| Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls |
