2X8OA

Crystal structure of cbpf in complex with atropine by soaking
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
311
structure length
311
Chain Sequence
NTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Choline-binding protein
molecule keywords CHOLINE-BINDING PROTEIN F
publication title Crystal Structure of Cbpf in Complex with Atropine by Soaking
rcsb
source organism Streptococcus pneumoniae
total genus 56
structure length 311
sequence length 311
ec nomenclature
pdb deposition date 2010-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2x8oA02
2.10.270.20 Mainly Beta Ribbon left handed beta-beta-3-solenoid left handed beta-beta-3-solenoid 2x8oA01
4AYGA 4NC0A 1OBAA 2J8GA 2G7CA 4X36A 2V05A 2V04A 2IXUA 2BMLA 2J8FA 3TTQA 2X8PA 2VYUA 4NBXA 1H09A 2X8OA 4NC2A 2F6EA 1HCXA 2X8MA 4NBZA 1GVMA 4TTUA 1H8GA 3KLLA 4TVCA 3TTOA 3KLKA 2QJ6A 4NBYA 4TVDA 3HIAA 2IXVA 3HZ3A
chains in the Genus database with same CATH superfamily
4AYGA 4NC0A 1OBAA 2J8GA 2G7CA 4X36A 2V05A 2V04A 2IXUA 2BMLA 2J8FA 3TTQA 2X8PA 2VYUA 4NBXA 1H09A 2X8OA 4NC2A 2F6EA 1HCXA 2X8MA 4NBZA 1GVMA 4TTUA 1H8GA 3KLLA 4TVCA 3TTOA 3KLKA 2QJ6A 4NBYA 4TVDA 3HIAA 2IXVA 3HZ3A
chains in the Genus database with same CATH topology
4AYGA 4NC0A 1OBAA 2J8GA 2G7CA 4X36A 2V05A 2V04A 2IXUA 2BMLA 2J8FA 3TTQA 2X8PA 2VYUA 4NBXA 1H09A 2X8OA 4NC2A 2F6EA 1HCXA 2X8MA 4NBZA 1GVMA 4TTUA 1H8GA 3KLLA 4TVCA 3TTOA 3KLKA 2QJ6A 4NBYA 4TVDA 3HIAA 2IXVA 3HZ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AYG A;  4NC0 A;  1OBA A;  2J8G A;  2G7C A;  4X36 A;  2V05 A;  2V04 A;  2IXU A;  2BML A;  2J8F A;  3TTQ A;  2X8P A;  2VYU A;  4NBX A;  1H09 A;  2X8O A;  4NC2 A;  2F6E A;  1HCX A;  2X8M A;  4NBZ A;  1GVM A;  4TTU A;  1H8G A;  3KLL A;  4TVC A;  3TTO A;  3KLK A;  2QJ6 A;  4NBY A;  4TVD A;  3HIA A;  2IXV A;  3HZ3 A; 
#chains in the Genus database with same CATH topology
 4AYG A;  4NC0 A;  1OBA A;  2J8G A;  2G7C A;  4X36 A;  2V05 A;  2V04 A;  2IXU A;  2BML A;  2J8F A;  3TTQ A;  2X8P A;  2VYU A;  4NBX A;  1H09 A;  2X8O A;  4NC2 A;  2F6E A;  1HCX A;  2X8M A;  4NBZ A;  1GVM A;  4TTU A;  1H8G A;  3KLL A;  4TVC A;  3TTO A;  3KLK A;  2QJ6 A;  4NBY A;  4TVD A;  3HIA A;  2IXV A;  3HZ3 A; 
#chains in the Genus database with same CATH homology
 4AYG A;  4NC0 A;  1OBA A;  2J8G A;  2G7C A;  4X36 A;  2V05 A;  2V04 A;  2IXU A;  2BML A;  2J8F A;  3TTQ A;  2X8P A;  2VYU A;  4NBX A;  1H09 A;  2X8O A;  4NC2 A;  2F6E A;  1HCX A;  2X8M A;  4NBZ A;  1GVM A;  4TTU A;  1H8G A;  3KLL A;  4TVC A;  3TTO A;  3KLK A;  2QJ6 A;  4NBY A;  4TVD A;  3HIA A;  2IXV A;  3HZ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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