2X8PA

Crystal structure of cbpf in complex with atropine by co- crystallization
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
311
structure length
311
Chain Sequence
NTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Choline-binding protein
molecule keywords CHOLINE-BINDING PROTEIN F
publication title Crystal Structures of Cbpf Complexed with Atropine and Ipratropium Reveal Clues for the Design of Novel Antimicrobials Against Streptococcus Pneumoniae.
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 56
structure length 311
sequence length 311
ec nomenclature
pdb deposition date 2010-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2x8pA02
2.10.270.20 Mainly Beta Ribbon left handed beta-beta-3-solenoid left handed beta-beta-3-solenoid 2x8pA01
2V05A 3HZ3A 2J8FA 3KLKA 1OBAA 2X8OA 2J8GA 1H09A 2QJ6A 4NC2A 3HIAA 1HCXA 4AYGA 2F6EA 3KLLA 4NBZA 2X8PA 2VYUA 2IXVA 1GVMA 4NBXA 2V04A 2BMLA 3TTQA 4X36A 4TVCA 4NBYA 4TTUA 2IXUA 3TTOA 1H8GA 2G7CA 4TVDA 4NC0A 2X8MA
chains in the Genus database with same CATH superfamily
2V05A 3HZ3A 2J8FA 3KLKA 1OBAA 2X8OA 2J8GA 1H09A 2QJ6A 4NC2A 3HIAA 1HCXA 4AYGA 2F6EA 3KLLA 4NBZA 2X8PA 2VYUA 2IXVA 1GVMA 4NBXA 2V04A 2BMLA 3TTQA 4X36A 4TVCA 4NBYA 4TTUA 2IXUA 3TTOA 1H8GA 2G7CA 4TVDA 4NC0A 2X8MA
chains in the Genus database with same CATH topology
2V05A 3HZ3A 2J8FA 3KLKA 1OBAA 2X8OA 2J8GA 1H09A 2QJ6A 4NC2A 3HIAA 1HCXA 4AYGA 2F6EA 3KLLA 4NBZA 2X8PA 2VYUA 2IXVA 1GVMA 4NBXA 2V04A 2BMLA 3TTQA 4X36A 4TVCA 4NBYA 4TTUA 2IXUA 3TTOA 1H8GA 2G7CA 4TVDA 4NC0A 2X8MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V05 A;  3HZ3 A;  2J8F A;  3KLK A;  1OBA A;  2X8O A;  2J8G A;  1H09 A;  2QJ6 A;  4NC2 A;  3HIA A;  1HCX A;  4AYG A;  2F6E A;  3KLL A;  4NBZ A;  2X8P A;  2VYU A;  2IXV A;  1GVM A;  4NBX A;  2V04 A;  2BML A;  3TTQ A;  4X36 A;  4TVC A;  4NBY A;  4TTU A;  2IXU A;  3TTO A;  1H8G A;  2G7C A;  4TVD A;  4NC0 A;  2X8M A; 
#chains in the Genus database with same CATH topology
 2V05 A;  3HZ3 A;  2J8F A;  3KLK A;  1OBA A;  2X8O A;  2J8G A;  1H09 A;  2QJ6 A;  4NC2 A;  3HIA A;  1HCX A;  4AYG A;  2F6E A;  3KLL A;  4NBZ A;  2X8P A;  2VYU A;  2IXV A;  1GVM A;  4NBX A;  2V04 A;  2BML A;  3TTQ A;  4X36 A;  4TVC A;  4NBY A;  4TTU A;  2IXU A;  3TTO A;  1H8G A;  2G7C A;  4TVD A;  4NC0 A;  2X8M A; 
#chains in the Genus database with same CATH homology
 2V05 A;  3HZ3 A;  2J8F A;  3KLK A;  1OBA A;  2X8O A;  2J8G A;  1H09 A;  2QJ6 A;  4NC2 A;  3HIA A;  1HCX A;  4AYG A;  2F6E A;  3KLL A;  4NBZ A;  2X8P A;  2VYU A;  2IXV A;  1GVM A;  4NBX A;  2V04 A;  2BML A;  3TTQ A;  4X36 A;  4TVC A;  4NBY A;  4TTU A;  2IXU A;  3TTO A;  1H8G A;  2G7C A;  4TVD A;  4NC0 A;  2X8M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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