2XD7A

Crystal structure of the macro domain of human core histone h2a
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
192
structure length
192
Chain Sequence
GPGDGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords CORE HISTONE MACRO-H2A.2
publication title Crystal Structure of the Macro Domain of Human Core Histone H2A
rcsb
source organism Homo sapiens
total genus 63
structure length 192
sequence length 192
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 2xd7A00
3EW5A 3V2BA 3H8GA 2J9AA 2X47A 4J5RA 3EWQA 3SIJA 3SIIA 1LAPA 4GVWA 3EKEA 2VRIA 2XD7A 3GPGA 3KQZA 5D8NA 1HJZA 3EWOA 5CMSA 1LAMA 4ZX9A 4IQYA 1YD9A 4R7MA 1TY8A 5CB5A 3VFQA 3IJ3A 1BPMA 4D86A 1NJRA 4ABLA 3GPQA 5FSYA 4ZX8A 3KQXA 5HOLA 3IIFA 2FXKA 3GPOA 3IIDA 1GYTA 4GUAA 5CBMA 3Q6ZA 2FG1A 3EJGA 3T8WA 4ZY2A 3KR5A 2L8RA 3Q71A 3PEIA 4K0CA 3ETIA 4ZY1A 4J4ZA 4R6TA 4ETJA 4ESSA 2EWBA 1TXZA 2ACFA 4TU0A 5CB3A 4ZYQA 1LANA 2EEEA 4J5QA 3JZTA 5FSVA 5FSZA 3EWPA 5DUSA 4ZY0A 2DX6A 4KSIA 3GQOA 2BFRA 4JCAA 3EWRA 4J5SA 1VHUA 4KYBA 3V45A 1BLLE 2LGRA 3EJFA 3GQEA 3KZWA 2FAVA 3SIHA 3H8FA 4ABKA 4UMLA 1SPVA 4ZI6A 4GVVA 4ETKA 4R76A 5FSXA 4X2TA 1ZR3A 2AFCA 3H8EA 4K3NA 2BFQA 1LCPA 1ZR5A 5FSUA 4JVVA 3KR4A 1BPNA 3SIGA 4JLLA 3JRUA 5E3BA 5HIHA 4JGKA 5AILA
chains in the Genus database with same CATH superfamily
3EW5A 3V2BA 3H8GA 2J9AA 2X47A 4J5RA 3EWQA 3SIJA 3SIIA 2JZEA 1LAPA 4GVWA 3EKEA 2VRIA 2XD7A 3GPGA 3KQZA 5D8NA 1HJZA 2KQVA 3EWOA 5CMSA 1LAMA 4ZX9A 4IQYA 1YD9A 4R7MA 1TY8A 5CB5A 3VFQA 3IJ3A 1BPMA 4D86A 1NJRA 2JZDA 4ABLA 3GPQA 5FSYA 4ZX8A 3KQXA 5HOLA 3IIFA 2FXKA 3GPOA 3IIDA 1GYTA 4GUAA 5CBMA 3Q6ZA 2FG1A 3EJGA 3T8WA 4ZY2A 3KR5A 2L8RA 3Q71A 3PEIA 4K0CA 3ETIA 4ZY1A 4J4ZA 4R6TA 4ETJA 2JZFA 2RNKA 2EWBA 4ESSA 1TXZA 2ACFA 4TU0A 5CB3A 4ZYQA 1LANA 2EEEA 4J5QA 3JZTA 5FSVA 5FSZA 3EWPA 5DUSA 4ZY0A 2DX6A 4KSIA 3GQOA 2BFRA 4JCAA 3EWRA 4J5SA 1VHUA 4KYBA 3V45A 1BLLE 2LGRA 3EJFA 3GQEA 3KZWA 2FAVA 3SIHA 3H8FA 4ABKA 4UMLA 1SPVA 4ZI6A 4GVVA 4ETKA 4R76A 5FSXA 4X2TA 1ZR3A 2AFCA 3H8EA 2BFQA 1LCPA 4K3NA 1ZR5A 5FSUA 2WCTA 4JVVA 3KR4A 1BPNA 3SIGA 4JLLA 3JRUA 5E3BA 5HIHA 2W2GA 4JGKA 5AILA
chains in the Genus database with same CATH topology
3EW5A 3V2BA 3H8GA 2J9AA 2X47A 4J5RA 3EWQA 3SIJA 3SIIA 1LAPA 4GVWA 3EKEA 2VRIA 2XD7A 3GPGA 3KQZA 5D8NA 1HJZA 3EWOA 5CMSA 1LAMA 4ZX9A 4IQYA 1YD9A 4R7MA 1TY8A 5CB5A 3VFQA 3IJ3A 1BPMA 4D86A 1NJRA 4ABLA 3GPQA 5FSYA 4ZX8A 3KQXA 5HOLA 3IIFA 2FXKA 3GPOA 3IIDA 1GYTA 4GUAA 5CBMA 3Q6ZA 2FG1A 3EJGA 3T8WA 4ZY2A 3KR5A 2L8RA 3Q71A 3PEIA 4K0CA 3ETIA 4ZY1A 4J4ZA 4R6TA 4ETJA 4ESSA 2EWBA 1TXZA 2ACFA 4TU0A 5CB3A 4ZYQA 1LANA 2EEEA 4J5QA 3JZTA 5FSVA 5FSZA 3EWPA 5DUSA 4ZY0A 2DX6A 4KSIA 3GQOA 2BFRA 4JCAA 3EWRA 4J5SA 1VHUA 4KYBA 3V45A 1BLLE 2LGRA 3EJFA 3GQEA 3KZWA 2FAVA 3SIHA 3H8FA 4ABKA 4UMLA 1SPVA 4ZI6A 4GVVA 4ETKA 4R76A 5FSXA 4X2TA 1ZR3A 2AFCA 3H8EA 4K3NA 2BFQA 1LCPA 1ZR5A 5FSUA 4JVVA 3KR4A 1BPNA 3SIGA 4JLLA 3JRUA 5E3BA 5HIHA 4JGKA 5AILA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EW5 A;  3V2B A;  3H8G A;  2J9A A;  2X47 A;  4J5R A;  3EWQ A;  3SIJ A;  3SII A;  1LAP A;  4GVW A;  3EKE A;  2VRI A;  2XD7 A;  3GPG A;  3KQZ A;  5D8N A;  1HJZ A;  3EWO A;  5CMS A;  1LAM A;  4ZX9 A;  4IQY A;  1YD9 A;  4R7M A;  1TY8 A;  5CB5 A;  3VFQ A;  3IJ3 A;  1BPM A;  4D86 A;  1NJR A;  4ABL A;  3GPQ A;  5FSY A;  4ZX8 A;  3KQX A;  5HOL A;  3IIF A;  2FXK A;  3GPO A;  3IID A;  1GYT A;  4GUA A;  5CBM A;  3Q6Z A;  2FG1 A;  3EJG A;  3T8W A;  4ZY2 A;  3KR5 A;  2L8R A;  3Q71 A;  3PEI A;  4K0C A;  3ETI A;  4ZY1 A;  4J4Z A;  4R6T A;  4ETJ A;  4ESS A;  2EWB A;  1TXZ A;  2ACF A;  4TU0 A;  5CB3 A;  4ZYQ A;  1LAN A;  2EEE A;  4J5Q A;  3JZT A;  5FSV A;  5FSZ A;  3EWP A;  5DUS A;  4ZY0 A;  2DX6 A;  4KSI A;  3GQO A;  2BFR A;  4JCA A;  3EWR A;  4J5S A;  1VHU A;  4KYB A;  3V45 A;  1BLL E;  2LGR A;  3EJF A;  3GQE A;  3KZW A;  2FAV A;  3SIH A;  3H8F A;  4ABK A;  4UML A;  1SPV A;  4ZI6 A;  4GVV A;  4ETK A;  4R76 A;  5FSX A;  4X2T A;  1ZR3 A;  2AFC A;  3H8E A;  4K3N A;  2BFQ A;  1LCP A;  1ZR5 A;  5FSU A;  4JVV A;  3KR4 A;  1BPN A;  3SIG A;  4JLL A;  3JRU A;  5E3B A;  5HIH A;  4JGK A;  5AIL A; 
#chains in the Genus database with same CATH topology
 3EW5 A;  3V2B A;  3H8G A;  2J9A A;  2X47 A;  4J5R A;  3EWQ A;  3SIJ A;  3SII A;  2JZE A;  1LAP A;  4GVW A;  3EKE A;  2VRI A;  2XD7 A;  3GPG A;  3KQZ A;  5D8N A;  1HJZ A;  2KQV A;  3EWO A;  5CMS A;  1LAM A;  4ZX9 A;  4IQY A;  1YD9 A;  4R7M A;  1TY8 A;  5CB5 A;  3VFQ A;  3IJ3 A;  1BPM A;  4D86 A;  1NJR A;  2JZD A;  4ABL A;  3GPQ A;  5FSY A;  4ZX8 A;  3KQX A;  5HOL A;  3IIF A;  2FXK A;  3GPO A;  3IID A;  1GYT A;  4GUA A;  5CBM A;  3Q6Z A;  2FG1 A;  3EJG A;  3T8W A;  4ZY2 A;  3KR5 A;  2L8R A;  3Q71 A;  3PEI A;  4K0C A;  3ETI A;  4ZY1 A;  4J4Z A;  4R6T A;  4ETJ A;  2JZF A;  2RNK A;  2EWB A;  4ESS A;  1TXZ A;  2ACF A;  4TU0 A;  5CB3 A;  4ZYQ A;  1LAN A;  2EEE A;  4J5Q A;  3JZT A;  5FSV A;  5FSZ A;  3EWP A;  5DUS A;  4ZY0 A;  2DX6 A;  4KSI A;  3GQO A;  2BFR A;  4JCA A;  3EWR A;  4J5S A;  1VHU A;  4KYB A;  3V45 A;  1BLL E;  2LGR A;  3EJF A;  3GQE A;  3KZW A;  2FAV A;  3SIH A;  3H8F A;  4ABK A;  4UML A;  1SPV A;  4ZI6 A;  4GVV A;  4ETK A;  4R76 A;  5FSX A;  4X2T A;  1ZR3 A;  2AFC A;  3H8E A;  2BFQ A;  1LCP A;  4K3N A;  1ZR5 A;  5FSU A;  2WCT A;  4JVV A;  3KR4 A;  1BPN A;  3SIG A;  4JLL A;  3JRU A;  5E3B A;  5HIH A;  2W2G A;  4JGK A;  5AIL A; 
#chains in the Genus database with same CATH homology
 3EW5 A;  3V2B A;  3H8G A;  2J9A A;  2X47 A;  4J5R A;  3EWQ A;  3SIJ A;  3SII A;  1LAP A;  4GVW A;  3EKE A;  2VRI A;  2XD7 A;  3GPG A;  3KQZ A;  5D8N A;  1HJZ A;  3EWO A;  5CMS A;  1LAM A;  4ZX9 A;  4IQY A;  1YD9 A;  4R7M A;  1TY8 A;  5CB5 A;  3VFQ A;  3IJ3 A;  1BPM A;  4D86 A;  1NJR A;  4ABL A;  3GPQ A;  5FSY A;  4ZX8 A;  3KQX A;  5HOL A;  3IIF A;  2FXK A;  3GPO A;  3IID A;  1GYT A;  4GUA A;  5CBM A;  3Q6Z A;  2FG1 A;  3EJG A;  3T8W A;  4ZY2 A;  3KR5 A;  2L8R A;  3Q71 A;  3PEI A;  4K0C A;  3ETI A;  4ZY1 A;  4J4Z A;  4R6T A;  4ETJ A;  4ESS A;  2EWB A;  1TXZ A;  2ACF A;  4TU0 A;  5CB3 A;  4ZYQ A;  1LAN A;  2EEE A;  4J5Q A;  3JZT A;  5FSV A;  5FSZ A;  3EWP A;  5DUS A;  4ZY0 A;  2DX6 A;  4KSI A;  3GQO A;  2BFR A;  4JCA A;  3EWR A;  4J5S A;  1VHU A;  4KYB A;  3V45 A;  1BLL E;  2LGR A;  3EJF A;  3GQE A;  3KZW A;  2FAV A;  3SIH A;  3H8F A;  4ABK A;  4UML A;  1SPV A;  4ZI6 A;  4GVV A;  4ETK A;  4R76 A;  5FSX A;  4X2T A;  1ZR3 A;  2AFC A;  3H8E A;  4K3N A;  2BFQ A;  1LCP A;  1ZR5 A;  5FSU A;  4JVV A;  3KR4 A;  1BPN A;  3SIG A;  4JLL A;  3JRU A;  5E3B A;  5HIH A;  4JGK A;  5AIL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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