2XFMA

Complex structure of the miwi paz domain bound to methylated single stranded rna
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
120
structure length
120
Chain Sequence
RSETVLDFMFNLYQQTEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Rna/protein
molecule keywords PIWI-LIKE PROTEIN 1
publication title Recognition of 2'-O-Methylated 3'-End of Pirna by the Paz Domain of a Piwi Protein.
pubmed doi rcsb
source organism Mus musculus
total genus 24
structure length 120
sequence length 120
ec nomenclature
pdb deposition date 2010-05-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02170 PAZ PAZ domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.260.10 Mainly Beta Beta Complex paz domain paz domain 2xfmA00
1SI3A 4KRFA 4NGGA 4NH3A 4W5NA 4W5QA 4W5TA 1VYNA 3QIRA 4KREA 4NGFA 3O7VX 4NGDA 4Z4CA 2QVWA 1R6ZA 4NH5A 4Z4FA 5T7BA 4OLAA 3O7XA 4W5RA 5KI6A 4Z4IA 4W5OA 4OLBA 3O6EX 3O3IX 4F3TA 4Z4EA 4NH6A 4Z4GA 4Z4HA 2L5DA 3MJ0A 1SI2A 4NHAA 5JS1A 5JS2A 1T2RA 2FFLA 4NGCA 4NGBA 2XFMA 2L5CA 1T2SA 1R4KA
chains in the Genus database with same CATH superfamily
1SI3A 4KRFA 4NGGA 4NH3A 3HO1A 4W5NA 4W5QA 1Z25A 4W5TA 1VYNA 3QIRA 3U1UA 3F73A 4NGFA 4KREA 4L1PA 3O7VX 4NGDA 1U04A 4Z4CA 2DB9A 2QVWA 1R6ZA 4L1UA 4NH5A 4Z4FA 5T7BA 4OLAA 3O7XA 4W5RA 3HJFA 5KI6A 3HK2A 4Z4IA 4W5OA 4OLBA 3O6EX 3O3IX 4F3TA 4Z4EA 4NH6A 4Z4GA 4Z4HA 2L5DA 3MJ0A 3DLHA 1SI2A 4NHAA 5JS1A 5JS2A 2BZEA 2FFLA 1T2RA 3HM9A 3DLBA 4NGCA 4NGBA 3DA5A 2XFMA 2L5CA 3HVRA 1Z26A 1T2SA 1R4KA
chains in the Genus database with same CATH topology
1SI3A 4KRFA 4NGGA 4NH3A 3HO1A 4W5NA 4W5QA 1Z25A 4W5TA 1VYNA 3QIRA 3U1UA 3F73A 4NGFA 4KREA 4L1PA 3O7VX 4NGDA 1U04A 4Z4CA 2DB9A 2QVWA 1R6ZA 4L1UA 4NH5A 4Z4FA 5T7BA 4OLAA 3O7XA 4W5RA 3HJFA 5KI6A 3HK2A 4Z4IA 4W5OA 4OLBA 3O6EX 3O3IX 4F3TA 4Z4EA 4NH6A 4Z4GA 4Z4HA 2L5DA 3MJ0A 3DLHA 1SI2A 4NHAA 5JS1A 5JS2A 2BZEA 2FFLA 1T2RA 3HM9A 3DLBA 4NGCA 4NGBA 3DA5A 2XFMA 2L5CA 3HVRA 1Z26A 1T2SA 1R4KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SI3 A;  4KRF A;  4NGG A;  4NH3 A;  4W5N A;  4W5Q A;  4W5T A;  1VYN A;  3QIR A;  4KRE A;  4NGF A;  3O7V X;  4NGD A;  4Z4C A;  2QVW A;  1R6Z A;  4NH5 A;  4Z4F A;  5T7B A;  4OLA A;  3O7X A;  4W5R A;  5KI6 A;  4Z4I A;  4W5O A;  4OLB A;  3O6E X;  3O3I X;  4F3T A;  4Z4E A;  4NH6 A;  4Z4G A;  4Z4H A;  2L5D A;  3MJ0 A;  1SI2 A;  4NHA A;  5JS1 A;  5JS2 A;  1T2R A;  2FFL A;  4NGC A;  4NGB A;  2XFM A;  2L5C A;  1T2S A;  1R4K A; 
#chains in the Genus database with same CATH topology
 1SI3 A;  4KRF A;  4NGG A;  4NH3 A;  3HO1 A;  4W5N A;  4W5Q A;  1Z25 A;  4W5T A;  1VYN A;  3QIR A;  3U1U A;  3F73 A;  4NGF A;  4KRE A;  4L1P A;  3O7V X;  4NGD A;  1U04 A;  4Z4C A;  2DB9 A;  2QVW A;  1R6Z A;  4L1U A;  4NH5 A;  4Z4F A;  5T7B A;  4OLA A;  3O7X A;  4W5R A;  3HJF A;  5KI6 A;  3HK2 A;  4Z4I A;  4W5O A;  4OLB A;  3O6E X;  3O3I X;  4F3T A;  4Z4E A;  4NH6 A;  4Z4G A;  4Z4H A;  2L5D A;  3MJ0 A;  3DLH A;  1SI2 A;  4NHA A;  5JS1 A;  5JS2 A;  2BZE A;  2FFL A;  1T2R A;  3HM9 A;  3DLB A;  4NGC A;  4NGB A;  3DA5 A;  2XFM A;  2L5C A;  3HVR A;  1Z26 A;  1T2S A;  1R4K A; 
#chains in the Genus database with same CATH homology
 1SI3 A;  4KRF A;  4NGG A;  4NH3 A;  3HO1 A;  4W5N A;  4W5Q A;  1Z25 A;  4W5T A;  1VYN A;  3QIR A;  3U1U A;  3F73 A;  4NGF A;  4KRE A;  4L1P A;  3O7V X;  4NGD A;  1U04 A;  4Z4C A;  2DB9 A;  2QVW A;  1R6Z A;  4L1U A;  4NH5 A;  4Z4F A;  5T7B A;  4OLA A;  3O7X A;  4W5R A;  3HJF A;  5KI6 A;  3HK2 A;  4Z4I A;  4W5O A;  4OLB A;  3O6E X;  3O3I X;  4F3T A;  4Z4E A;  4NH6 A;  4Z4G A;  4Z4H A;  2L5D A;  3MJ0 A;  3DLH A;  1SI2 A;  4NHA A;  5JS1 A;  5JS2 A;  2BZE A;  2FFL A;  1T2R A;  3HM9 A;  3DLB A;  4NGC A;  4NGB A;  3DA5 A;  2XFM A;  2L5C A;  3HVR A;  1Z26 A;  1T2S A;  1R4K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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