2XGAA

Mtsl spin-labelled shigella flexneri spa15
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
130
structure length
127
Chain Sequence
INLVQLVRDSLFTIGCPPSIITDHSAITISLDSMPAINIALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEILNGVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAK
publication title Shigella Flexneri Spa15 Crystal Structure Verified in Solution by Double Electron Electron Resonance.
pubmed doi rcsb
source organism Shigella flexneri
total genus 34
structure length 127
sequence length 130
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03519 Invas_SpaK Invasion protein B family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.10 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 2xgaA00
1K3SA 3EPUA 2XGAA 1XKPC 4JMFB 1XKPB 2BSIA 1N5BA 4G6TA 3TU3A 1K3EA 2BSJA 2BHOA 2BSHA 1JYAA 3CXJA 3KXYA 4GF3A 1RY9A 4AKXA 1TTWA 1S28A 1JYOA 1K6ZA 2PLGA 2FM8A 1L2WA
chains in the Genus database with same CATH superfamily
3UKRD 3DXKD 1TYQF 1K3SA 2P9KD 3EPUA 2XGAA 1XKPC 2P9PF 4GSLC 2DYTA 3DXMF 4XEIF 2OD0A 3RSEF 4JMFB 1XKPB 2P9SF 1K8KF 2BSIA 2P9KF 3UKRF 3ULED 3UKUF 3DWLD 3DXKF 1N5BA 4G6TA 4JD2D 1K8KD 3TU3A 2P9ND 2P9UD 1K3EA 2LPUA 2BSJA 2MQDA 2BHOA 2P9ID 3VX7B 2P9LD 2KC5A 1U2VD 2BSHA 3ULEF 1JYAA 4EBRA 3DWLF 3CXJA 3KXYA 4GF3A 2P9UF 1RY9A 4AKXA 1TYQD 4JD2F 1TTWA 2P9NF 1S28A 3VX8B 2P9IF 2P9PD 4XEID 1JYOA 3DXMD 1K6ZA 2PLGA 3RSED 2FM8A 1L2WA 2P9LF 2P9SD 1U2VF 4H5BA 3UKUD
chains in the Genus database with same CATH topology
3UKRD 3DXKD 1TYQF 1K3SA 2P9KD 3EPUA 2XGAA 1XKPC 2P9PF 4GSLC 2DYTA 3DXMF 4XEIF 3RSEF 4JMFB 1XKPB 2P9SF 1K8KF 2BSIA 2P9KF 3UKRF 3ULED 3UKUF 3DWLD 3DXKF 1N5BA 4G6TA 4JD2D 1K8KD 3TU3A 2P9ND 2P9UD 1K3EA 2LPUA 2BSJA 2MQDA 2BHOA 2P9ID 3VX7B 2P9LD 2KC5A 1U2VD 2BSHA 3ULEF 1JYAA 4EBRA 3DWLF 3CXJA 3KXYA 4GF3A 2P9UF 1RY9A 4AKXA 1TYQD 4JD2F 1TTWA 2P9NF 1S28A 3VX8B 2P9IF 2P9PD 4XEID 1JYOA 3DXMD 1K6ZA 2PLGA 3RSED 2FM8A 1L2WA 2P9LF 2P9SD 1U2VF 4H5BA 3UKUD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K3S A;  3EPU A;  2XGA A;  1XKP C;  4JMF B;  1XKP B;  2BSI A;  1N5B A;  4G6T A;  3TU3 A;  1K3E A;  2BSJ A;  2BHO A;  2BSH A;  1JYA A;  3CXJ A;  3KXY A;  4GF3 A;  1RY9 A;  4AKX A;  1TTW A;  1S28 A;  1JYO A;  1K6Z A;  2PLG A;  2FM8 A;  1L2W A; 
#chains in the Genus database with same CATH topology
 3UKR D;  3DXK D;  1TYQ F;  1K3S A;  2P9K D;  3EPU A;  2XGA A;  1XKP C;  2P9P F;  4GSL C;  2DYT A;  3DXM F;  4XEI F;  2OD0 A;  3RSE F;  4JMF B;  1XKP B;  2P9S F;  1K8K F;  2BSI A;  2P9K F;  3UKR F;  3ULE D;  3UKU F;  3DWL D;  3DXK F;  1N5B A;  4G6T A;  4JD2 D;  1K8K D;  3TU3 A;  2P9N D;  2P9U D;  1K3E A;  2LPU A;  2BSJ A;  2MQD A;  2BHO A;  2P9I D;  3VX7 B;  2P9L D;  2KC5 A;  1U2V D;  2BSH A;  3ULE F;  1JYA A;  4EBR A;  3DWL F;  3CXJ A;  3KXY A;  4GF3 A;  2P9U F;  1RY9 A;  4AKX A;  1TYQ D;  4JD2 F;  1TTW A;  2P9N F;  1S28 A;  3VX8 B;  2P9I F;  2P9P D;  4XEI D;  1JYO A;  3DXM D;  1K6Z A;  2PLG A;  3RSE D;  2FM8 A;  1L2W A;  2P9L F;  2P9S D;  1U2V F;  4H5B A;  3UKU D; 
#chains in the Genus database with same CATH homology
 3UKR D;  3DXK D;  1TYQ F;  1K3S A;  2P9K D;  3EPU A;  2XGA A;  1XKP C;  2P9P F;  4GSL C;  2DYT A;  3DXM F;  4XEI F;  3RSE F;  4JMF B;  1XKP B;  2P9S F;  1K8K F;  2BSI A;  2P9K F;  3UKR F;  3ULE D;  3UKU F;  3DWL D;  3DXK F;  1N5B A;  4G6T A;  4JD2 D;  1K8K D;  3TU3 A;  2P9N D;  2P9U D;  1K3E A;  2LPU A;  2BSJ A;  2MQD A;  2BHO A;  2P9I D;  3VX7 B;  2P9L D;  2KC5 A;  1U2V D;  2BSH A;  3ULE F;  1JYA A;  4EBR A;  3DWL F;  3CXJ A;  3KXY A;  4GF3 A;  2P9U F;  1RY9 A;  4AKX A;  1TYQ D;  4JD2 F;  1TTW A;  2P9N F;  1S28 A;  3VX8 B;  2P9I F;  2P9P D;  4XEI D;  1JYO A;  3DXM D;  1K6Z A;  2PLG A;  3RSE D;  2FM8 A;  1L2W A;  2P9L F;  2P9S D;  1U2V F;  4H5B A;  3UKU D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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