2XGRA

Extracellular endonuclease
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
218
structure length
197
Chain Sequence
RTYPNVSHANTHYKNTVSSKLLPFTANYQLQLGELDNLNRATFSHIQLQDRHETKDVRTKIWVMNRGHLVGYQFCGLNDEPRNLVAMTAWLNTGAYSGANDSNPEGMLYYENRLDSWLALHPDFWLDYKVTPIYSGNEVVPRQIELQYVGIDSSGELLTIRLNSNKESIDENGVTTVILENSAPNINLDYLNGTATP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structural Characterization of a Prophage-Encoded Extracellular DNase from Streptococcus Pyogenes.
pubmed doi rcsb
molecule tags Hydrolase
source organism Streptococcus pyogenes serotype m1
molecule keywords SPD1 NUCLEASE
total genus 48
structure length 197
sequence length 218
ec nomenclature ec 3.1.21.1: Deoxyribonuclease I.
pdb deposition date 2010-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13930 Endonuclea_NS_2 DNA/RNA non-specific endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.570.10 Alpha Beta 3-Layer(aba) Sandwich Extracellular Endonuclease; Chain A Extracellular Endonuclease, subunit A 2xgrA00
4ZG9A 5KXAA 5L0KA 5LQQA 4GTWA 5IJQA 5GKCA 4ZG6A 1G8TA 5HRTA 3WAXA 1QAEA 4QN0A 5DLVA 3NKOA 3NKPA 4QH0A 5LIAA 5DLWA 4GTZA 5IJSA 4B56A 5L0BA 2XRGA 3ISMA 4ZG7A 3WAYA 4A1NA 3NKMA 3WAWA 2O3BA 5GKPA 3WAVA 3NKNA 4GTYA 3NKRA 1ZM8A 2XGRA 4ZGAA 2XH3A 5L0EA 2XR9A 4GTXA 4E3YA 1QL0A 1SMNA 5DLTA 4QGOA 5INHA 3S5BA 3OWVA 3NKQA
chains in the Genus database with same CATH superfamily
4ZG9A 5KXAA 5L0KA 5LQQA 4GTWA 5IJQA 5GKCA 4ZG6A 1G8TA 5HRTA 3WAXA 1QAEA 4QN0A 5DLVA 3NKOA 3NKPA 4QH0A 5LIAA 5DLWA 4GTZA 5IJSA 4B56A 5L0BA 2XRGA 3ISMA 4ZG7A 3WAYA 4A1NA 3NKMA 3WAWA 2O3BA 5GKPA 3WAVA 3NKNA 4GTYA 3NKRA 1ZM8A 2XGRA 4ZGAA 2XH3A 5L0EA 2XR9A 4GTXA 4E3YA 1QL0A 1SMNA 5DLTA 4QGOA 5INHA 3S5BA 3OWVA 3NKQA
chains in the Genus database with same CATH topology
4ZG9A 5KXAA 5L0KA 5LQQA 4GTWA 5IJQA 5GKCA 4ZG6A 1G8TA 5HRTA 3WAXA 1QAEA 4QN0A 5DLVA 3NKOA 3NKPA 4QH0A 5LIAA 5DLWA 4GTZA 5IJSA 4B56A 5L0BA 2XRGA 3ISMA 4ZG7A 3WAYA 4A1NA 3NKMA 3WAWA 2O3BA 5GKPA 3WAVA 3NKNA 4GTYA 3NKRA 1ZM8A 2XGRA 4ZGAA 2XH3A 5L0EA 2XR9A 4GTXA 4E3YA 1QL0A 1SMNA 5DLTA 4QGOA 5INHA 3S5BA 3OWVA 3NKQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZG9 A;  5KXA A;  5L0K A;  5LQQ A;  4GTW A;  5IJQ A;  5GKC A;  4ZG6 A;  1G8T A;  5HRT A;  3WAX A;  1QAE A;  4QN0 A;  5DLV A;  3NKO A;  3NKP A;  4QH0 A;  5LIA A;  5DLW A;  4GTZ A;  5IJS A;  4B56 A;  5L0B A;  2XRG A;  3ISM A;  4ZG7 A;  3WAY A;  4A1N A;  3NKM A;  3WAW A;  2O3B A;  5GKP A;  3WAV A;  3NKN A;  4GTY A;  3NKR A;  1ZM8 A;  2XGR A;  4ZGA A;  2XH3 A;  5L0E A;  2XR9 A;  4GTX A;  4E3Y A;  1QL0 A;  1SMN A;  5DLT A;  4QGO A;  5INH A;  3S5B A;  3OWV A;  3NKQ A; 
#chains in the Genus database with same CATH topology
 4ZG9 A;  5KXA A;  5L0K A;  5LQQ A;  4GTW A;  5IJQ A;  5GKC A;  4ZG6 A;  1G8T A;  5HRT A;  3WAX A;  1QAE A;  4QN0 A;  5DLV A;  3NKO A;  3NKP A;  4QH0 A;  5LIA A;  5DLW A;  4GTZ A;  5IJS A;  4B56 A;  5L0B A;  2XRG A;  3ISM A;  4ZG7 A;  3WAY A;  4A1N A;  3NKM A;  3WAW A;  2O3B A;  5GKP A;  3WAV A;  3NKN A;  4GTY A;  3NKR A;  1ZM8 A;  2XGR A;  4ZGA A;  2XH3 A;  5L0E A;  2XR9 A;  4GTX A;  4E3Y A;  1QL0 A;  1SMN A;  5DLT A;  4QGO A;  5INH A;  3S5B A;  3OWV A;  3NKQ A; 
#chains in the Genus database with same CATH homology
 4ZG9 A;  5KXA A;  5L0K A;  5LQQ A;  4GTW A;  5IJQ A;  5GKC A;  4ZG6 A;  1G8T A;  5HRT A;  3WAX A;  1QAE A;  4QN0 A;  5DLV A;  3NKO A;  3NKP A;  4QH0 A;  5LIA A;  5DLW A;  4GTZ A;  5IJS A;  4B56 A;  5L0B A;  2XRG A;  3ISM A;  4ZG7 A;  3WAY A;  4A1N A;  3NKM A;  3WAW A;  2O3B A;  5GKP A;  3WAV A;  3NKN A;  4GTY A;  3NKR A;  1ZM8 A;  2XGR A;  4ZGA A;  2XH3 A;  5L0E A;  2XR9 A;  4GTX A;  4E3Y A;  1QL0 A;  1SMN A;  5DLT A;  4QGO A;  5INH A;  3S5B A;  3OWV A;  3NKQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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