2XGVA

Structure of the n-terminal domain of capsid protein from rabbit endogenous lentivirus (relik)
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
133
structure length
133
Chain Sequence
PVVNRGQGWAYEPMSTRTVAAWIRQTGEKGLTSPETITYWGLISQDLSSREQVQLLEVVPGLQADKDMLGAYLEERAREWDAQPQQPLPYTSAHIRGLTGDQAFAISAQGREAAQVFRAWITQGLMNLAQLRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Functional Analysis of Prehistoric Lentiviruses Uncovers an Ancient Molecular Interface.
pubmed doi rcsb
source organism Microcebus murinus
molecule tags Viral protein
molecule keywords PSIV CAPSID N-TERMINAL DOMAIN
total genus 49
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2010-06-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2xgvA00
1M9YC 2V4XA 5HGOA 4HTWA 5JPAA 5HGNA 2PWMA 4XFXA 2LF4A 3H4EA 2PXRC 1D1DA 5HGKA 2X83A 5HGMA 2X2DD 2JPRA 2Y4ZA 1M9CC 4NX4C 3BP9A 1EIAA 4XROA 1E6JP 4XFZA 4INBA 1AK4C 2WLVB 2X82A 2XGVA 4U0DA 1G03A 1L6NA 4LQWC 2M8LA 4U0BA 4B4NA 3H47A 1QRJA 4XRQA 4QNBA 4DGAC 2EIAA 4E92A 1M9FC 2GOLB 1U7KA 4PH3A 1GWPA 2KGFA 3NTEA 4E91A 4PH0A 2M8PA 3P05A 2XGYA 1P7NA 3MGEA 5HGLA 4PH2A 4WYMA 4DGEC 4J93A 1EM9A 1AFVA 1M9DC 4U0AA 1M9XC 2XGUA 2PWOA 4U0FA 2WLVA 2GONA 2XDEA 4U0CA 4XFYA 1M9EC 4U0EA 2M8NA
chains in the Genus database with same CATH superfamily
1M9YC 2V4XA 5HGOA 4HTWA 5JPAA 5HGNA 2PWMA 4XFXA 2LF4A 3H4EA 2PXRC 1D1DA 5HGKA 2X83A 5HGMA 2X2DD 2JPRA 2Y4ZA 1M9CC 4NX4C 3BP9A 1EIAA 4XROA 1E6JP 4XFZA 4INBA 1AK4C 2WLVB 2X82A 2XGVA 4U0DA 1G03A 1L6NA 4LQWC 2M8LA 4U0BA 4B4NA 3H47A 1QRJA 4XRQA 4QNBA 4DGAC 2EIAA 4E92A 1M9FC 2GOLB 1U7KA 4PH3A 1GWPA 2KGFA 3NTEA 4E91A 4PH0A 2M8PA 3P05A 2XGYA 1P7NA 3MGEA 5HGLA 4PH2A 4WYMA 4DGEC 4J93A 1EM9A 1AFVA 1M9DC 4U0AA 1M9XC 2XGUA 2PWOA 4U0FA 2WLVA 2GONA 2XDEA 4U0CA 4XFYA 1M9EC 4U0EA 2M8NA
chains in the Genus database with same CATH topology
1M9YC 2V4XA 5HGOA 4HTWA 5JPAA 5HGNA 2PWMA 4XFXA 2LF4A 3H4EA 2PXRC 1D1DA 5HGKA 2X83A 5HGMA 2X2DD 2JPRA 2Y4ZA 1M9CC 4NX4C 3BP9A 1EIAA 4XROA 1E6JP 4XFZA 4INBA 1AK4C 2WLVB 2X82A 2XGVA 4U0DA 1G03A 1L6NA 4LQWC 2M8LA 4U0BA 4B4NA 3H47A 1QRJA 4XRQA 4QNBA 4DGAC 2EIAA 4E92A 1M9FC 2GOLB 1U7KA 4PH3A 1GWPA 2KGFA 3NTEA 4E91A 4PH0A 2M8PA 3P05A 2XGYA 1P7NA 3MGEA 5HGLA 4PH2A 4WYMA 4DGEC 4J93A 1EM9A 1AFVA 1M9DC 4U0AA 1M9XC 2XGUA 2PWOA 4U0FA 2WLVA 2GONA 2XDEA 4U0CA 4XFYA 1M9EC 4U0EA 2M8NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M9Y C;  2V4X A;  5HGO A;  4HTW A;  5JPA A;  5HGN A;  2PWM A;  4XFX A;  2LF4 A;  3H4E A;  2PXR C;  1D1D A;  5HGK A;  2X83 A;  5HGM A;  2X2D D;  2JPR A;  2Y4Z A;  1M9C C;  4NX4 C;  3BP9 A;  1EIA A;  4XRO A;  1E6J P;  4XFZ A;  4INB A;  1AK4 C;  2WLV B;  2X82 A;  2XGV A;  4U0D A;  1G03 A;  1L6N A;  4LQW C;  2M8L A;  4U0B A;  4B4N A;  3H47 A;  1QRJ A;  4XRQ A;  4QNB A;  4DGA C;  2EIA A;  4E92 A;  1M9F C;  2GOL B;  1U7K A;  4PH3 A;  1GWP A;  2KGF A;  3NTE A;  4E91 A;  4PH0 A;  2M8P A;  3P05 A;  2XGY A;  1P7N A;  3MGE A;  5HGL A;  4PH2 A;  4WYM A;  4DGE C;  4J93 A;  1EM9 A;  1AFV A;  1M9D C;  4U0A A;  1M9X C;  2XGU A;  2PWO A;  4U0F A;  2WLV A;  2GON A;  2XDE A;  4U0C A;  4XFY A;  1M9E C;  4U0E A;  2M8N A; 
#chains in the Genus database with same CATH topology
 1M9Y C;  2V4X A;  5HGO A;  4HTW A;  5JPA A;  5HGN A;  2PWM A;  4XFX A;  2LF4 A;  3H4E A;  2PXR C;  1D1D A;  5HGK A;  2X83 A;  5HGM A;  2X2D D;  2JPR A;  2Y4Z A;  1M9C C;  4NX4 C;  3BP9 A;  1EIA A;  4XRO A;  1E6J P;  4XFZ A;  4INB A;  1AK4 C;  2WLV B;  2X82 A;  2XGV A;  4U0D A;  1G03 A;  1L6N A;  4LQW C;  2M8L A;  4U0B A;  4B4N A;  3H47 A;  1QRJ A;  4XRQ A;  4QNB A;  4DGA C;  2EIA A;  4E92 A;  1M9F C;  2GOL B;  1U7K A;  4PH3 A;  1GWP A;  2KGF A;  3NTE A;  4E91 A;  4PH0 A;  2M8P A;  3P05 A;  2XGY A;  1P7N A;  3MGE A;  5HGL A;  4PH2 A;  4WYM A;  4DGE C;  4J93 A;  1EM9 A;  1AFV A;  1M9D C;  4U0A A;  1M9X C;  2XGU A;  2PWO A;  4U0F A;  2WLV A;  2GON A;  2XDE A;  4U0C A;  4XFY A;  1M9E C;  4U0E A;  2M8N A; 
#chains in the Genus database with same CATH homology
 1M9Y C;  2V4X A;  5HGO A;  4HTW A;  5JPA A;  5HGN A;  2PWM A;  4XFX A;  2LF4 A;  3H4E A;  2PXR C;  1D1D A;  5HGK A;  2X83 A;  5HGM A;  2X2D D;  2JPR A;  2Y4Z A;  1M9C C;  4NX4 C;  3BP9 A;  1EIA A;  4XRO A;  1E6J P;  4XFZ A;  4INB A;  1AK4 C;  2WLV B;  2X82 A;  2XGV A;  4U0D A;  1G03 A;  1L6N A;  4LQW C;  2M8L A;  4U0B A;  4B4N A;  3H47 A;  1QRJ A;  4XRQ A;  4QNB A;  4DGA C;  2EIA A;  4E92 A;  1M9F C;  2GOL B;  1U7K A;  4PH3 A;  1GWP A;  2KGF A;  3NTE A;  4E91 A;  4PH0 A;  2M8P A;  3P05 A;  2XGY A;  1P7N A;  3MGE A;  5HGL A;  4PH2 A;  4WYM A;  4DGE C;  4J93 A;  1EM9 A;  1AFV A;  1M9D C;  4U0A A;  1M9X C;  2XGU A;  2PWO A;  4U0F A;  2WLV A;  2GON A;  2XDE A;  4U0C A;  4XFY A;  1M9E C;  4U0E A;  2M8N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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