2XGVA

Structure of the n-terminal domain of capsid protein from rabbit endogenous lentivirus (relik)
Total Genus 49
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
133
structure length
133
Chain Sequence
PVVNRGQGWAYEPMSTRTVAAWIRQTGEKGLTSPETITYWGLISQDLSSREQVQLLEVVPGLQADKDMLGAYLEERAREWDAQPQQPLPYTSAHIRGLTGDQAFAISAQGREAAQVFRAWITQGLMNLAQLRA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords PSIV CAPSID N-TERMINAL DOMAIN
publication title Structural and Functional Analysis of Prehistoric Lentiviruses Uncovers an Ancient Molecular Interface.
pubmed doi rcsb
source organism Microcebus murinus
molecule tags Viral protein
total genus 49
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2010-06-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.375.10 Mainly Alpha Orthogonal Bundle Human Immunodeficiency Virus Type 1 Capsid Protein Human Immunodeficiency Virus Type 1 Capsid Protein 2xgvA00
1G03A 5HGLA 4U0FA 2X82A 4QNBA 2M8NA 4U0CA 3P05A 4U0EA 2Y4ZA 1M9XC 3BP9A 2XDEA 3MGEA 4INBA 4WYMA 2X83A 4XFZA 1AK4C 4XFXA 1L6NA 4B4NA 2EIAA 4U0DA 1P7NA 3H47A 5HGMA 1E6JP 2WLVA 2PXRC 2M8LA 5JPAA 1EM9A 2V4XA 2PWOA 1M9EC 4LQWC 1M9FC 2PWMA 1U7KA 1M9DC 4XFYA 2X2DD 4XROA 4E91A 1M9YC 4PH3A 4U0AA 2XGVA 1QRJA 4PH2A 2LF4A 4E92A 4DGEC 1GWPA 2WLVB 5HGNA 1AFVA 2KGFA 2GONA 3H4EA 4XRQA 1M9CC 2XGYA 4DGAC 4J93A 3NTEA 1D1DA 2M8PA 5HGKA 1EIAA 2GOLB 4NX4C 5HGOA 4HTWA 2XGUA 4U0BA 2JPRA 4PH0A
chains in the Genus database with same CATH superfamily
1G03A 5HGLA 4U0FA 2X82A 4QNBA 2M8NA 4U0CA 3P05A 4U0EA 2Y4ZA 1M9XC 3BP9A 2XDEA 3MGEA 4INBA 4WYMA 2X83A 4XFZA 1AK4C 4XFXA 1L6NA 4B4NA 2EIAA 4U0DA 1P7NA 3H47A 5HGMA 1E6JP 2WLVA 2PXRC 2M8LA 5JPAA 1EM9A 2V4XA 2PWOA 1M9EC 4LQWC 1M9FC 2PWMA 1U7KA 1M9DC 4XFYA 2X2DD 4XROA 4E91A 1M9YC 4PH3A 4U0AA 2XGVA 1QRJA 4PH2A 2LF4A 4E92A 4DGEC 1GWPA 2WLVB 5HGNA 1AFVA 2KGFA 2GONA 3H4EA 4XRQA 1M9CC 2XGYA 4DGAC 4J93A 3NTEA 1D1DA 2M8PA 5HGKA 1EIAA 2GOLB 4NX4C 5HGOA 4HTWA 2XGUA 4U0BA 2JPRA 4PH0A
chains in the Genus database with same CATH topology
1G03A 5HGLA 4U0FA 2X82A 4QNBA 2M8NA 4U0CA 3P05A 4U0EA 2Y4ZA 1M9XC 3BP9A 2XDEA 3MGEA 4INBA 4WYMA 2X83A 4XFZA 1AK4C 4XFXA 1L6NA 4B4NA 2EIAA 4U0DA 1P7NA 3H47A 5HGMA 1E6JP 2WLVA 2PXRC 2M8LA 5JPAA 1EM9A 2V4XA 2PWOA 1M9EC 4LQWC 1M9FC 2PWMA 1U7KA 1M9DC 4XFYA 2X2DD 4XROA 4E91A 1M9YC 4PH3A 4U0AA 2XGVA 1QRJA 4PH2A 2LF4A 4E92A 4DGEC 1GWPA 2WLVB 5HGNA 1AFVA 2KGFA 2GONA 3H4EA 4XRQA 1M9CC 2XGYA 4DGAC 4J93A 3NTEA 1D1DA 2M8PA 5HGKA 1EIAA 2GOLB 4NX4C 5HGOA 4HTWA 2XGUA 4U0BA 2JPRA 4PH0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G03 A;  5HGL A;  4U0F A;  2X82 A;  4QNB A;  2M8N A;  4U0C A;  3P05 A;  4U0E A;  2Y4Z A;  1M9X C;  3BP9 A;  2XDE A;  3MGE A;  4INB A;  4WYM A;  2X83 A;  4XFZ A;  1AK4 C;  4XFX A;  1L6N A;  4B4N A;  2EIA A;  4U0D A;  1P7N A;  3H47 A;  5HGM A;  1E6J P;  2WLV A;  2PXR C;  2M8L A;  5JPA A;  1EM9 A;  2V4X A;  2PWO A;  1M9E C;  4LQW C;  1M9F C;  2PWM A;  1U7K A;  1M9D C;  4XFY A;  2X2D D;  4XRO A;  4E91 A;  1M9Y C;  4PH3 A;  4U0A A;  2XGV A;  1QRJ A;  4PH2 A;  2LF4 A;  4E92 A;  4DGE C;  1GWP A;  2WLV B;  5HGN A;  1AFV A;  2KGF A;  2GON A;  3H4E A;  4XRQ A;  1M9C C;  2XGY A;  4DGA C;  4J93 A;  3NTE A;  1D1D A;  2M8P A;  5HGK A;  1EIA A;  2GOL B;  4NX4 C;  5HGO A;  4HTW A;  2XGU A;  4U0B A;  2JPR A;  4PH0 A; 
#chains in the Genus database with same CATH topology
 1G03 A;  5HGL A;  4U0F A;  2X82 A;  4QNB A;  2M8N A;  4U0C A;  3P05 A;  4U0E A;  2Y4Z A;  1M9X C;  3BP9 A;  2XDE A;  3MGE A;  4INB A;  4WYM A;  2X83 A;  4XFZ A;  1AK4 C;  4XFX A;  1L6N A;  4B4N A;  2EIA A;  4U0D A;  1P7N A;  3H47 A;  5HGM A;  1E6J P;  2WLV A;  2PXR C;  2M8L A;  5JPA A;  1EM9 A;  2V4X A;  2PWO A;  1M9E C;  4LQW C;  1M9F C;  2PWM A;  1U7K A;  1M9D C;  4XFY A;  2X2D D;  4XRO A;  4E91 A;  1M9Y C;  4PH3 A;  4U0A A;  2XGV A;  1QRJ A;  4PH2 A;  2LF4 A;  4E92 A;  4DGE C;  1GWP A;  2WLV B;  5HGN A;  1AFV A;  2KGF A;  2GON A;  3H4E A;  4XRQ A;  1M9C C;  2XGY A;  4DGA C;  4J93 A;  3NTE A;  1D1D A;  2M8P A;  5HGK A;  1EIA A;  2GOL B;  4NX4 C;  5HGO A;  4HTW A;  2XGU A;  4U0B A;  2JPR A;  4PH0 A; 
#chains in the Genus database with same CATH homology
 1G03 A;  5HGL A;  4U0F A;  2X82 A;  4QNB A;  2M8N A;  4U0C A;  3P05 A;  4U0E A;  2Y4Z A;  1M9X C;  3BP9 A;  2XDE A;  3MGE A;  4INB A;  4WYM A;  2X83 A;  4XFZ A;  1AK4 C;  4XFX A;  1L6N A;  4B4N A;  2EIA A;  4U0D A;  1P7N A;  3H47 A;  5HGM A;  1E6J P;  2WLV A;  2PXR C;  2M8L A;  5JPA A;  1EM9 A;  2V4X A;  2PWO A;  1M9E C;  4LQW C;  1M9F C;  2PWM A;  1U7K A;  1M9D C;  4XFY A;  2X2D D;  4XRO A;  4E91 A;  1M9Y C;  4PH3 A;  4U0A A;  2XGV A;  1QRJ A;  4PH2 A;  2LF4 A;  4E92 A;  4DGE C;  1GWP A;  2WLV B;  5HGN A;  1AFV A;  2KGF A;  2GON A;  3H4E A;  4XRQ A;  1M9C C;  2XGY A;  4DGA C;  4J93 A;  3NTE A;  1D1D A;  2M8P A;  5HGK A;  1EIA A;  2GOL B;  4NX4 C;  5HGO A;  4HTW A;  2XGU A;  4U0B A;  2JPR A;  4PH0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...