The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
173
|
structure length |
173
|
Chain Sequence |
DFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Probing the Active Site of the Sugar Isomerase Domain from E. Coli Arabinose-5-Phosphate Isomerase Via X-Ray Crystallography.
pubmed doi rcsb |
| molecule keywords |
ARABINOSE 5-PHOSPHATE ISOMERASE
|
| molecule tags |
Isomerase
|
| source organism |
Escherichia coli
|
| total genus |
60
|
| structure length |
173
|
| sequence length |
173
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
5.3.1.13: Arabinose-5-phosphate isomerase. |
| pdb deposition date | 2010-06-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01380 | SIS | SIS domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Glucose-6-phosphate isomerase like protein; domain 1 |
