2XI5A

N-terminal endonuclease domain of la crosse virus l-protein
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
184
structure length
184
Chain Sequence
GMDYQEYQQFLARINTARDACVAKDIDVDLLMARHDYFGRELCKSLNIEYRNDVPFIDIILDIRPEVDPLTIDAPHITPDNYLYINNVLYIIDYKVSVSNESSVITYDKYYELTRDISDRLSIPIEIVIIRIDPVSRDLHINSDRFKELYPTIVVDINFNQFFDLKQLLYEKFGDDEEFLLKVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords RNA POLYMERASE L
publication title Bunyaviridae RNA Polymerases (L-Protein) Have an N-Terminal, Influenza-Like Endonuclease Domain, Essential for Viral CAP-Dependent Transcription.
pubmed doi rcsb
source organism Bunyavirus la crosse
total genus 54
structure length 184
sequence length 184
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2010-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF15518 L_protein_N L protein N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.60 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 2xi5A00
2XI5A 2XI7A
chains in the Genus database with same CATH superfamily
5D2OA 1VRRA 1ES8A 3HW5A 4ZHZA 5D42A 3HW4A 5I13A 3DW9A 1DC1A 2GB7A 1D2IA 3V1ZA 4E5GA 3WVGA 2FOKA 1CFRA 4E5JA 4R28A 3HW6A 2P0JA 4F0PA 2XI5A 2EWFA 3CAEA 5EGAA 1BHMA 4F0QA 3WVPA 3N78A 2PFJA 1SDOA 4E5LA 5JHTA 4NFZA 2P14A 3HW3A 4AWGA 4CHCA 3MQ6A 3V20A 4YYLA 4AWKA 1ESGA 2E52A 1FOKA 5D8UA 5D9JA 5CZNA 3MQYA 1BAMA 3EBJA 4AWFA 4ZI0A 4E5FA 3WVIA 3BM3A 1KNVA 3V21A 5DESA 4AWMA 4AWHA 5FDGA 1M0DA 1FZRA 4E5IA 2FQZA 2BAMA 5DBSA 3N7BA 3WVKA 3DPGA 4E5EA 3DVOA 4OC8A 4CGXA 3WVHA 4AVLA 4E5HA 3ODHA 4CGSA 3A4KA 3BAMA 1DFMA 5CL0A 5FDDA 5JHVA 5DEBA 2XI7A 5CCYA 4ZQQA 5D4GA 4AVQA 4AVGA 5CGVA 1M0IA
chains in the Genus database with same CATH topology
5D2OA 1VRRA 1ES8A 3HW5A 4ZHZA 5D42A 3HW4A 5I13A 3DW9A 1DC1A 2GB7A 1D2IA 3V1ZA 4E5GA 3WVGA 2FOKA 1CFRA 4E5JA 4R28A 3HW6A 2P0JA 4F0PA 2XI5A 2EWFA 3CAEA 5EGAA 1BHMA 4F0QA 3WVPA 3N78A 2PFJA 1SDOA 4E5LA 5JHTA 4NFZA 2P14A 3HW3A 4AWGA 4CHCA 3MQ6A 3V20A 4YYLA 4AWKA 1ESGA 2E52A 1FOKA 5D8UA 5D9JA 5CZNA 3MQYA 1BAMA 3EBJA 4AWFA 4ZI0A 4E5FA 3WVIA 3BM3A 1KNVA 3V21A 5DESA 4AWMA 4AWHA 5FDGA 1M0DA 1FZRA 4E5IA 2FQZA 2BAMA 5DBSA 3N7BA 3WVKA 3DPGA 4E5EA 3DVOA 4OC8A 4CGXA 3WVHA 4AVLA 4E5HA 3ODHA 4CGSA 3A4KA 3BAMA 1DFMA 5CL0A 5FDDA 5JHVA 5DEBA 2XI7A 5CCYA 4ZQQA 5D4GA 4AVQA 4AVGA 5CGVA 1M0IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XI5 A;  2XI7 A; 
#chains in the Genus database with same CATH topology
 5D2O A;  1VRR A;  1ES8 A;  3HW5 A;  4ZHZ A;  5D42 A;  3HW4 A;  5I13 A;  3DW9 A;  1DC1 A;  2GB7 A;  1D2I A;  3V1Z A;  4E5G A;  3WVG A;  2FOK A;  1CFR A;  4E5J A;  4R28 A;  3HW6 A;  2P0J A;  4F0P A;  2XI5 A;  2EWF A;  3CAE A;  5EGA A;  1BHM A;  4F0Q A;  3WVP A;  3N78 A;  2PFJ A;  1SDO A;  4E5L A;  5JHT A;  4NFZ A;  2P14 A;  3HW3 A;  4AWG A;  4CHC A;  3MQ6 A;  3V20 A;  4YYL A;  4AWK A;  1ESG A;  2E52 A;  1FOK A;  5D8U A;  5D9J A;  5CZN A;  3MQY A;  1BAM A;  3EBJ A;  4AWF A;  4ZI0 A;  4E5F A;  3WVI A;  3BM3 A;  1KNV A;  3V21 A;  5DES A;  4AWM A;  4AWH A;  5FDG A;  1M0D A;  1FZR A;  4E5I A;  2FQZ A;  2BAM A;  5DBS A;  3N7B A;  3WVK A;  3DPG A;  4E5E A;  3DVO A;  4OC8 A;  4CGX A;  3WVH A;  4AVL A;  4E5H A;  3ODH A;  4CGS A;  3A4K A;  3BAM A;  1DFM A;  5CL0 A;  5FDD A;  5JHV A;  5DEB A;  2XI7 A;  5CCY A;  4ZQQ A;  5D4G A;  4AVQ A;  4AVG A;  5CGV A;  1M0I A; 
#chains in the Genus database with same CATH homology
 5D2O A;  1VRR A;  1ES8 A;  3HW5 A;  4ZHZ A;  5D42 A;  3HW4 A;  5I13 A;  3DW9 A;  1DC1 A;  2GB7 A;  1D2I A;  3V1Z A;  4E5G A;  3WVG A;  2FOK A;  1CFR A;  4E5J A;  4R28 A;  3HW6 A;  2P0J A;  4F0P A;  2XI5 A;  2EWF A;  3CAE A;  5EGA A;  1BHM A;  4F0Q A;  3WVP A;  3N78 A;  2PFJ A;  1SDO A;  4E5L A;  5JHT A;  4NFZ A;  2P14 A;  3HW3 A;  4AWG A;  4CHC A;  3MQ6 A;  3V20 A;  4YYL A;  4AWK A;  1ESG A;  2E52 A;  1FOK A;  5D8U A;  5D9J A;  5CZN A;  3MQY A;  1BAM A;  3EBJ A;  4AWF A;  4ZI0 A;  4E5F A;  3WVI A;  3BM3 A;  1KNV A;  3V21 A;  5DES A;  4AWM A;  4AWH A;  5FDG A;  1M0D A;  1FZR A;  4E5I A;  2FQZ A;  2BAM A;  5DBS A;  3N7B A;  3WVK A;  3DPG A;  4E5E A;  3DVO A;  4OC8 A;  4CGX A;  3WVH A;  4AVL A;  4E5H A;  3ODH A;  4CGS A;  3A4K A;  3BAM A;  1DFM A;  5CL0 A;  5FDD A;  5JHV A;  5DEB A;  2XI7 A;  5CCY A;  4ZQQ A;  5D4G A;  4AVQ A;  4AVG A;  5CGV A;  1M0I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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