The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
90
|
sequence length |
313
|
structure length |
304
|
Chain Sequence |
TSVLIRKYAIGDYSKLLEGATLQLTRVFSSNDIGERIELSDGTYTLTELNSPAGYSIAEPITFKVEAGKVYTIIDGKQIENPNKEIVEPYSVEAYNDFEEFSVLTTQNYAKFYYAKNKNGSSQVVYCFNADLKSPPDSEDGGKTMTPDFTTGEVKYTHIAGRDLFKYTVKPRDTDPDTFLKHIKKVIEKGYREKGQAIEYSGLTETQLRAATQLAIYYFTDSAELDKDKLKDYHGFGDMNDSTLAVAKILVEYAQDSNPPQLTDLDFFIPNNNKYQSLIGTQWHPEDLVDIIRMEDKKEVIPVT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A Highly Unusual Thioester Bond in a Pilus Adhesin is Required for Efficient Host Cell Interaction
pubmed doi rcsb |
| molecule keywords |
ANCILLARY PROTEIN 1
|
| molecule tags |
Cell adhesion
|
| source organism |
Streptococcus pyogenes
|
| total genus |
90
|
| structure length |
304
|
| sequence length |
313
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-06-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08341 | TED | Thioester domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | DNA polymerase; domain 1 | DNA polymerase; domain 1 | ||
| Mainly Beta | Roll | SH3 type barrels. | SH3 type barrels. | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins |
